View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18042_high_14 (Length: 266)

Name: NF18042_high_14
Description: NF18042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18042_high_14
NF18042_high_14
[»] scaffold0009 (2 HSPs)
scaffold0009 (8-266)||(40455-40713)
scaffold0009 (13-266)||(33837-34087)
[»] chr5 (7 HSPs)
chr5 (57-135)||(19806889-19806967)
chr5 (55-119)||(17377359-17377423)
chr5 (57-181)||(25511072-25511196)
chr5 (57-132)||(1347935-1348010)
chr5 (83-134)||(20111942-20111993)
chr5 (55-119)||(17383724-17383788)
chr5 (57-121)||(19653900-19653964)
[»] chr6 (1 HSPs)
chr6 (58-122)||(16258450-16258514)
[»] chr2 (1 HSPs)
chr2 (77-122)||(15784653-15784698)
[»] chr3 (2 HSPs)
chr3 (58-122)||(32226556-32226620)
chr3 (58-122)||(32242030-32242094)


Alignment Details
Target: scaffold0009 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 8 - 266
Target Start/End: Complemental strand, 40713 - 40455
Alignment:
Q  8 gagatgaacaaacaaaaatcaaattatagctgctatccatgggaatgataaacaaacctttttaatcgaaagagtttgaagtttcggacaattctggagc 107  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40713 gagaagaacaaacaaaaatcaaattatagctgctatccatgggaatgataaacaaacctttttaatcgaaagagtttgaagtttcggacaattctggagc 40614  T
Q  108 attttcattacctcactccagtcatgagtgacacgtgaagtccacgataaccgaagttcaattaagttttcaaatataggtaagcttttgtaatatgaag 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40613 attttcattacctcactccagtcatgagtgacacgtgaagtccacgataaccgaagttcaattaagttttcaaatataggtaagcttttgtaatatgaag 40514  T
Q  208 tannnnnnncacttggaagacgagtccccatctgcacatcacaaacaaacaaaaatcaa 266  Q
    ||       |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  40513 tattttcttcactaggaagacgagtccccatctgcacatcacaaacaaacaaaaatcaa 40455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 13 - 266
Target Start/End: Complemental strand, 34087 - 33837
Alignment:
Q  13 gaacaaacaaaaatcaaattatagctgctatccatgggaatgataaacaaacctttttaatcgaaagagtttgaagtttcggacaattctggagcatttt 112  Q
    ||||||| ||||||||||||||| ||   ||||||  | | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||     
T  34087 gaacaaagaaaaatcaaattataact---atccataagcaagataaacaaacctttttaatcgaaagagtttgaagtttcggacaatgctggagcatttg 33991  T
Q  113 cattacctcactccagtcatgagtgacacgtgaagtccacgataaccgaagttcaattaagttttcaaatataggtaagcttttgtaatatgaagtannn 212  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||        
T  33990 cattacctcactccagtcatgagtaacacgtgaagtccacgataaccgaagttcaattaagttttcaaatagaggcaagtttttgtaatatgaagtgttt 33891  T
Q  213 nnnncacttggaagacgagtccccatctgcacatcacaaacaaacaaaaatcaa 266  Q
        || | |||||||||||||||||||||||||||||||||||||||||||||    
T  33890 tcttcattgggaagacgagtccccatctgcacatcacaaacaaacaaaaatcaa 33837  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 57 - 135
Target Start/End: Complemental strand, 19806967 - 19806889
Alignment:
Q  57 aaacaaacctttttaatcgaaagagtttgaagtttcggacaattctggagcattttcattacctcactccagtcatgag 135  Q
    ||||||||||||||||| | ||||||||| ||||| |||||||| ||||||||||||| |||||||  ||| |||||||    
T  19806967 aaacaaacctttttaattgcaagagtttggagtttgggacaattttggagcattttcactacctcatcccaatcatgag 19806889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 17377423 - 17377359
Alignment:
Q  55 ataaacaaacctttttaatcgaaagagtttgaagtttcggacaattctggagcattttcattacc 119  Q
    ||||||||||||||  ||| | ||||||||||||||| ||||||||||| |||||||||| ||||    
T  17377423 ataaacaaacctttacaatggtaagagtttgaagtttgggacaattctgtagcattttcaatacc 17377359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 181
Target Start/End: Original strand, 25511072 - 25511196
Alignment:
Q  57 aaacaaacctttttaatcgaaagagtttgaagtttcggacaattctggagcattttcattacctcactccagtcatgagtgacacgtgaagtccacgata 156  Q
    ||||||||||||| |||  |||||| || |||||| |||| |||   ||||||||||| || |||||||||||||| |||| | ||   |  ||| ||||    
T  25511072 aaacaaaccttttcaatgtaaagagcttcaagtttgggactattgatgagcattttcagtatctcactccagtcataagtgtctcgattaaaccaagata 25511171  T
Q  157 accgaagttcaattaagttttcaaa 181  Q
     ||||||||||||||||||||||||    
T  25511172 tccgaagttcaattaagttttcaaa 25511196  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 132
Target Start/End: Original strand, 1347935 - 1348010
Alignment:
Q  57 aaacaaacctttttaatcgaaagagtttgaagtttcggacaattctggagcattttcattacctcactccagtcat 132  Q
    ||||||||||||  ||| || |||||||||||||| |||||||||| ||||||||||| || ||||| ||| ||||    
T  1347935 aaacaaacctttgaaatggagagagtttgaagtttaggacaattctcgagcattttcactatctcaccccaatcat 1348010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 134
Target Start/End: Complemental strand, 20111993 - 20111942
Alignment:
Q  83 ttgaagtttcggacaattctggagcattttcattacctcactccagtcatga 134  Q
    ||||||||| ||||| |||||||||||||||| |||||||| ||||||||||    
T  20111993 ttgaagtttgggacatttctggagcattttcactacctcaccccagtcatga 20111942  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 17383788 - 17383724
Alignment:
Q  55 ataaacaaacctttttaatcgaaagagtttgaagtttcggacaattctggagcattttcattacc 119  Q
    ||||||||||||||  ||| | ||||||||||||| | ||||||||||| |||||||||| ||||    
T  17383788 ataaacaaacctttagaatggtaagagtttgaagtatgggacaattctgtagcattttcactacc 17383724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 19653900 - 19653964
Alignment:
Q  57 aaacaaacctttttaatcgaaagagtttgaagtttcggacaattctggagcattttcattacctc 121  Q
    |||||||||||||||||   ||||| ||||||||| |||||||  || ||||||||||| |||||    
T  19653900 aaacaaacctttttaattttaagagcttgaagtttgggacaatattgtagcattttcataacctc 19653964  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 122
Target Start/End: Original strand, 16258450 - 16258514
Alignment:
Q  58 aacaaacctttttaatcgaaagagtttgaagtttcggacaattctggagcattttcattacctca 122  Q
    |||||||||||  ||| |||||| ||||||||||||||||||| |||||||||| || |||||||    
T  16258450 aacaaacctttgaaattgaaagactttgaagtttcggacaattatggagcatttgcactacctca 16258514  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 77 - 122
Target Start/End: Complemental strand, 15784698 - 15784653
Alignment:
Q  77 aagagtttgaagtttcggacaattctggagcattttcattacctca 122  Q
    ||||| ||||||||| ||||||||||| |||||||||| |||||||    
T  15784698 aagagcttgaagttttggacaattctgtagcattttcactacctca 15784653  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 122
Target Start/End: Complemental strand, 32226620 - 32226556
Alignment:
Q  58 aacaaacctttttaatcgaaagagtttgaagtttcggacaattctggagcattttcattacctca 122  Q
    |||||||||||  ||| | ||||||||||||||| |||||||  |||||||||| || |||||||    
T  32226620 aacaaacctttgaaattggaagagtttgaagtttgggacaataatggagcatttgcactacctca 32226556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 122
Target Start/End: Original strand, 32242030 - 32242094
Alignment:
Q  58 aacaaacctttttaatcgaaagagtttgaagtttcggacaattctggagcattttcattacctca 122  Q
    |||||||||||  ||| |||||||||||||| || |||||||  |||||||||| || |||||||    
T  32242030 aacaaacctttaaaattgaaagagtttgaaggttgggacaataatggagcatttgcagtacctca 32242094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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