View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18042_high_16 (Length: 255)
Name: NF18042_high_16
Description: NF18042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18042_high_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 26032560 - 26032777
Alignment:
| Q |
19 |
atacagaaacattgtgttgcaaacactataagcttttcatatcgtgtcatgcaagttactgttatcatcattgtcaaataaacgaccgccggcttcaaca |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26032560 |
atacagaaacattgtgttgcaaacactataagctttttatatcgtgtcatgcaagttacggttatcatcattgtcaaataaacgaccgccggcttcaaca |
26032659 |
T |
|
| Q |
119 |
tcgtcctccaaattactgaagtcaatacatagaaatggatccatgaagtcgtcaaggaggtttgcttcaacatcgtcctccaacgaaataggcttcttcc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26032660 |
tcgtcctccaaattactgaagtcaatacatagaaatggatccatgaagtcatcaaggaggtttgcttcaacatcgtcctccaacgaaataggcttcttcc |
26032759 |
T |
|
| Q |
219 |
ctttttcatcaacgaaat |
236 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
26032760 |
ctttttcatcaacgaaat |
26032777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 38171901 - 38172046
Alignment:
| Q |
20 |
tacagaaacattgtgttgcaaacactataagcttttcatatcgtgtcatgcaagttactgttatcatcattgtcaaataaacgaccgccggcttcaacat |
119 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
38171901 |
tacagaaaaattgtgttgcaaacactataagctttttatatcgtgtcatgcaagttactgttatcatcattgtcaaataaacgaccgccggtttcaacat |
38172000 |
T |
|
| Q |
120 |
cgtcctccaaattactgaagtcaatacatagaaatggatccatgaa |
165 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
38172001 |
cgtcctccaaattactgaagtcaatacatagacatggatccatgaa |
38172046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 20 - 230
Target Start/End: Complemental strand, 38181577 - 38181375
Alignment:
| Q |
20 |
tacagaaacattgtgttgcaaacactataagcttttcatatcgtgtcatgcaagttactgttat----catcattgtcaaataaacgaccgccggcttca |
115 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
38181577 |
tacagaaaaattgtgttgcaaacactataagctttttatatcgtgtcatgcaagttactgttatatatcatcattgtcaaataaacgactgccggcttca |
38181478 |
T |
|
| Q |
116 |
acatcgtcctccaaattactgaagtcaatacatagaaatggatccatgaagtcgtcaaggaggtttgcttcaacatcgtcctccaacgaaataggcttct |
215 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||| || ||| |||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
38181477 |
acatcgtcctccaaattactgaagtcaatcaa---------atccatgaaatcatca---aggtttgcttcaacatcgtcctccaatgaaattggcttct |
38181390 |
T |
|
| Q |
216 |
tccctttttcatcaa |
230 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
38181389 |
tccctttttcatcaa |
38181375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 20 - 230
Target Start/End: Original strand, 38189554 - 38189756
Alignment:
| Q |
20 |
tacagaaacattgtgttgcaaacactataagcttttcatatcgtgtcatgcaagttactgttat----catcattgtcaaataaacgaccgccggcttca |
115 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
38189554 |
tacagaaaaattgtgttgcaaacactataagctttttatatcgtgtcatgcaagttactgttatatatcatcattgtcaaataaacgactgccggcttca |
38189653 |
T |
|
| Q |
116 |
acatcgtcctccaaattactgaagtcaatacatagaaatggatccatgaagtcgtcaaggaggtttgcttcaacatcgtcctccaacgaaataggcttct |
215 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||| || ||| |||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
38189654 |
acatcgtcctccaaattactgaagtcaatcaa---------atccatgaaatcatca---aggtttgcttcaacatcgtcctccaatgaaattggcttct |
38189741 |
T |
|
| Q |
216 |
tccctttttcatcaa |
230 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
38189742 |
tccctttttcatcaa |
38189756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 20 - 230
Target Start/End: Original strand, 38216779 - 38216981
Alignment:
| Q |
20 |
tacagaaacattgtgttgcaaacactataagcttttcatatcgtgtcatgcaagttactgttat----catcattgtcaaataaacgaccgccggcttca |
115 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
38216779 |
tacagaaaaattgtgttgcaaacactataagctttttatatcgtgtcatgcaagttactgttatatatcatcattgtcaaataaacgactgccggcttca |
38216878 |
T |
|
| Q |
116 |
acatcgtcctccaaattactgaagtcaatacatagaaatggatccatgaagtcgtcaaggaggtttgcttcaacatcgtcctccaacgaaataggcttct |
215 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||| || ||| |||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
38216879 |
acatcgtcctccaaattactgaagtcaatcaa---------atccatgaaatcatca---aggtttgcttcaacatcgtcctccaatgaaattggcttct |
38216966 |
T |
|
| Q |
216 |
tccctttttcatcaa |
230 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
38216967 |
tccctttttcatcaa |
38216981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 20 - 230
Target Start/End: Complemental strand, 38208803 - 38208599
Alignment:
| Q |
20 |
tacagaaacattgtgttgcaaacactataagcttttcatatcgtgtcatgcaagttactgttat----catcattgtcaaataaacgaccgccggcttca |
115 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
38208803 |
tacagaaaaattgtgttgcaaacactataagctttttatatcgtgtcatgcaagttactgttatatatcatcattgtcaaataaacgactgccggcttca |
38208704 |
T |
|
| Q |
116 |
acatcgtcctccaaattactgaagtcaatacatagaaatggatccatgaagtcgtcaaggaggtttgcttcaac-atc-gtcctccaacgaaataggctt |
213 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||| || ||| |||||||||||||| ||| ||||||||| ||||| ||||| |
|
|
| T |
38208703 |
acatcgtcctccaaattactgaagtcaatcaa---------atccatgaaatcatca---aggtttgcttcaacgatcggtcctccaatgaaattggctt |
38208616 |
T |
|
| Q |
214 |
cttccctttttcatcaa |
230 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
38208615 |
cttccctttttcatcaa |
38208599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 38456941 - 38456736
Alignment:
| Q |
19 |
atacagaaacattgtgttgcaaacactataagcttttcatatcgtgtcatgcaagttactgttat------catcattgtcaaataaacgaccgccggct |
112 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
38456941 |
atacagaaaagttgtgttgcaaacaatataagctttttatatcttgtcatgcaagttactgttatatatatcatcattgtcaaataaacgactgccggct |
38456842 |
T |
|
| Q |
113 |
tcaacatcgtcctccaaattactgaagtcaatacatagaaatggatccatgaagtcgtcaaggaggtttgcttcaacatcgtcctccaacgaaataggct |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||||||| || ||| ||||||||||||| |||||||||||| ||||| |||| |
|
|
| T |
38456841 |
tcaacatcgtcctccaaattactgaagtcaatcaa---------atccatgaaatcatca---aggtttgcttcaaaatcgtcctccaatgaaattggct |
38456754 |
T |
|
| Q |
213 |
tcttccctttttcatcaa |
230 |
Q |
| |
|
||||||| |||||||||| |
|
|
| T |
38456753 |
tcttcccattttcatcaa |
38456736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 133 - 236
Target Start/End: Original strand, 53350919 - 53351019
Alignment:
| Q |
133 |
actgaagtcaatacatagaaatggatccatgaagtcgtcaaggaggtttgcttcaacatcgtcctccaacgaaataggcttcttccctttttcatcaacg |
232 |
Q |
| |
|
|||||||||||| | ||| | |||||||| ||||| |||||| ||||||||||||||||||| ||| ||||| |||||||| |||||||||||||| |
|
|
| T |
53350919 |
actgaagtcaatcaaaagacacggatccatcaagtcatcaagg---tttgcttcaacatcgtccttcaaagaaattggcttctttcctttttcatcaacc |
53351015 |
T |
|
| Q |
233 |
aaat |
236 |
Q |
| |
|
|||| |
|
|
| T |
53351016 |
aaat |
53351019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University