View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18042_high_3 (Length: 473)
Name: NF18042_high_3
Description: NF18042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18042_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 5394378 - 5394166
Alignment:
| Q |
1 |
gagattggtggtttgcagattttagtttgagactggagggtgtgttggattctatgaacaaagctaaggaacatggattcataggatttaggaattctaa |
100 |
Q |
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| T |
5394378 |
gagattggtggtttgcagattttagtttgagactggagggtgtgttggattctatgaacaaagctaaggaacatggattcataggatttaggaattctaa |
5394279 |
T |
|
| Q |
101 |
gaattcattcattagttggattgacaagacaaaagcttacaagattgtgtcatgatgattaacttcggctctggattgtggtaaataaagtcccatggtg |
200 |
Q |
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| T |
5394278 |
gaattcattcattagttggattgacaagacaaaagcttacaagattgtgccatgatgattaatttcagctctggattgtggtaaataaagtcccatggtg |
5394179 |
T |
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| Q |
201 |
gggtggaaagaga |
213 |
Q |
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||||||||||||| |
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| T |
5394178 |
gggtggaaagaga |
5394166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 250 - 457
Target Start/End: Complemental strand, 5394129 - 5393925
Alignment:
| Q |
250 |
gctctttctgtaataatgttcacttgtttggtaatgttctcactttcgctatttcttaattctcttaacttcttcacatattattagtaatttctgagtt |
349 |
Q |
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| T |
5394129 |
gctctttctgtaataatgttcacttgtttggtaatgttcacactttcgctatttcttaattctcttaacttcttcacatattaata---atttctaagtt |
5394033 |
T |
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| Q |
350 |
acattatatggttcaagaatagaaaaataaaagatgctacgtattgtgatggactcagacacaagaaagacatgtgaattttatttcaatctgcatatac |
449 |
Q |
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| T |
5394032 |
acattatatggttcaagaatagaaaaataaaagatgctacgtattgtgatggactcagacacaagaaacacatgtgaattttatttcaatctgcatacac |
5393933 |
T |
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| Q |
450 |
ctgtataa |
457 |
Q |
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|||||||| |
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| T |
5393932 |
ctgtataa |
5393925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 5399559 - 5399404
Alignment:
| Q |
1 |
gagattggtggtttgcagattttagtttgagactggagggtgtgttggattctatgaacaaagctaaggaacatggattcataggatttaggaattctaa |
100 |
Q |
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|||||||||||||||||||||||| || ||| ||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
5399559 |
gagattggtggtttgcagattttatgtttagagtggagggtgtgttggatagtatgaacaagtctaaggaacatggattcttaggatttaggaattctaa |
5399460 |
T |
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| Q |
101 |
gaattcattcattagttggattgacaagacaaaagcttacaagattgtgtcatgat |
156 |
Q |
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| T |
5399459 |
gaattcgttcattagttggattgataagacaaaagcttacaagattgtgccatgat |
5399404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 5390840 - 5390682
Alignment:
| Q |
1 |
gagattggtggtttgcagattttagtttgagactggagggtgtgttggattctatgaacaaagctaaggaacatggattcataggatttaggaattctaa |
100 |
Q |
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|||||||||||||||||||||||| || ||| ||||||||||||||||| ||||||||| ||||||||||||||||| | ||||||||||||||||| |
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| T |
5390840 |
gagattggtggtttgcagattttatgtttagagtggagggtgtgttggatagtatgaacaagtctaaggaacatggattcttgggatttaggaattctaa |
5390741 |
T |
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| Q |
101 |
gaattcattcattagttggattgacaagacaaaagcttacaagattgtgtcatgatgat |
159 |
Q |
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|||| |||||||||||||||||||| || |||| |||||||||||| ||||||||| |
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| T |
5390740 |
gaatgtgttcattagttggattgacaaaactaaagtgtacaagattgtgccatgatgat |
5390682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 331 - 442
Target Start/End: Complemental strand, 5390303 - 5390192
Alignment:
| Q |
331 |
tattagtaatttctgagttacattatatggttcaagaatagaaaaataaaagatgctacgtattgtgatggactcagacacaagaaagacatgtgaattt |
430 |
Q |
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||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||| | || |||||||| ||| |||||||||||| |
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| T |
5390303 |
tattagtaatttctgaggtacattatatgcttcaagaaaagaaaaataaaagatgctacgtattgtgatagtctgagacacaaaaaacacatgtgaattt |
5390204 |
T |
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| Q |
431 |
tatttcaatctg |
442 |
Q |
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| T |
5390203 |
tatttcaatctg |
5390192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 261 - 323
Target Start/End: Complemental strand, 5390553 - 5390492
Alignment:
| Q |
261 |
aataatgttcacttgtttggtaatgttctcactttcgctatttcttaattctcttaacttctt |
323 |
Q |
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| T |
5390553 |
aataatgttcacttgtt-ggtaattttctaactttcactatttcttaattctcttaacttctt |
5390492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 448
Target Start/End: Complemental strand, 5399156 - 5399094
Alignment:
| Q |
388 |
acgtattgtgatggactcagacacaagaaagaca--tgtgaattttatttcaatctgcatata |
448 |
Q |
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| T |
5399156 |
acgtattgtgatgctccgagacacaagaaacacacatgtgaattttatttcaatctgcatata |
5399094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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