View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18042_low_10 (Length: 390)
Name: NF18042_low_10
Description: NF18042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18042_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 10 - 371
Target Start/End: Complemental strand, 37077044 - 37076680
Alignment:
| Q |
10 |
catcatcaacaaactccaattatgcatacccaattgctaaaacattgcgaaaacaaacaaaagattgatttttctcatttcaaacataccccactttctc |
109 |
Q |
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| T |
37077044 |
catcatcaacaaactccaattatgcatacccaattgctaaaacattgcgaaaacaaacaaaagattgatttttctcatttcaaacataccccactttctc |
37076945 |
T |
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| Q |
110 |
tatctctcactacactcaaaccaaaaatagtcaaagtcggaaaacaaaagtaaagacaagtcaactaactctgctagcatctggatcaagacaagtctga |
209 |
Q |
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| T |
37076944 |
tatctctcactacactcaaaccaaaaatagtcaaagtcggaaaacaaaagtaaagacaagtcaactaactctgctagcatctggatcaagacaagtctga |
37076845 |
T |
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| Q |
210 |
gagtttttggaatcagaaacagccttaggagaaacaatgaagggtt---tgcatccatagcttcttcttgttgaaactgtggtgatcttatcaccacaga |
306 |
Q |
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| T |
37076844 |
gagtttttggaatcagaaacagccttaggagaaacaatgaagggtttgctgcatccatagcttcttcttgttgaaactgtggtgatcttatcaccacaga |
37076745 |
T |
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| Q |
307 |
gctgtgatgaagtgaatgagaggttgcgtgcaatggctttggatgatgatgaagaagaagatgag |
371 |
Q |
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| T |
37076744 |
gctgtgatgaagtgaatgagaggttgcgtgcaatggctttggatgatgatgaagaagaagatgag |
37076680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 172 - 240
Target Start/End: Complemental strand, 42463374 - 42463306
Alignment:
| Q |
172 |
aactaactctgctagcatctggatcaagacaagtctgagagtttttggaatcagaaacagccttaggag |
240 |
Q |
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| T |
42463374 |
aactcactctgctagcgtcaggatcaaggcaagtctgagaattctgtgaatcagaaacagccttaggag |
42463306 |
T |
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