View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18042_low_11 (Length: 381)
Name: NF18042_low_11
Description: NF18042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18042_low_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 3 - 184
Target Start/End: Complemental strand, 23867382 - 23867197
Alignment:
| Q |
3 |
atcaatggttggtgttctctttatctaattgggtttatggaatttaataaataacaaccctaattataataatacatgaagagagactcatattacttta |
102 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
23867382 |
atcaatggctggtgttctctttatctaattgggtttatggaatttaataaaaaacaaccctaatgataataatacatgaagagagacttatattacttta |
23867283 |
T |
|
| Q |
103 |
cacaagttacaattctcttattagaaattctttctactaatttaagatagttttgtatc----aagcttgtgcttcttcttcaaat |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
23867282 |
cacaagttacaattctcttattagaaattctttctactaatttaagatagttttgtatcaagcaagcttgtgcttcttcttcaaat |
23867197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 236 - 364
Target Start/End: Complemental strand, 23867125 - 23866997
Alignment:
| Q |
236 |
gtgattcttttggaggaagaataaaatagttagattgataattaagagtcattactcacaagttaaccattttcagtaacaaacttatttgattcaacat |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
23867125 |
gtgattcttttggaggaagaataaaatagttagattgataattaagagtcattactcacatgttaaccattttcagtaacaaacttatttaattcaacat |
23867026 |
T |
|
| Q |
336 |
tagtagttctaatcaaaatatgggattgt |
364 |
Q |
| |
|
||||| ||||||||||||||||||||||| |
|
|
| T |
23867025 |
tagtaattctaatcaaaatatgggattgt |
23866997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University