View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18042_low_12 (Length: 350)
Name: NF18042_low_12
Description: NF18042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18042_low_12 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 7 - 350
Target Start/End: Original strand, 19721339 - 19721688
Alignment:
| Q |
7 |
cctaactggtccaccatgcctgaccaggacttga------attgcagtatcgtaccatttcccgttaccggtttagtagaagacgaggaaatcaccattg |
100 |
Q |
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| T |
19721339 |
cctaactggtccaccatgcctgaccaggacttgaatttgaattgcagtatcgtaccatttcccgttaccggtttagtagaagacgaggaaatcaccattg |
19721438 |
T |
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| Q |
101 |
acgacgatccttactatctaatgagtgataaggattattgtcagatggttggttcatgtaatggcttgatatgttattcttctgttgccaaaaatagaaa |
200 |
Q |
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| T |
19721439 |
acgacgatccttactatctaatcagtgataaggattgttgtcagatggttggttcatgtaatggcttgatatgttattcttctgttgccaaaaatagaaa |
19721538 |
T |
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| Q |
201 |
ctggctccgtttttggaatccggccactcattcgttatctgaaaaactattcttgttgagccatggtcgacacaccaaattcacatttggttatgacatt |
300 |
Q |
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| T |
19721539 |
ctggctccgtttttggaatccggccactcattcgttatctgaaaaactattcttgttgagccatggtcgacacaccaaattcacatttggttatgatatt |
19721638 |
T |
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| Q |
301 |
tcaactaaaacttataaggtggtggcctactctgaatacaatgtgaaaat |
350 |
Q |
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| T |
19721639 |
tcaactaaaacttataaggtggtggcctactctgaatacaatgtgaaaat |
19721688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 328
Target Start/End: Complemental strand, 12820365 - 12820317
Alignment:
| Q |
280 |
ttcacatttggttatgacatttcaactaaaacttataaggtggtggcct |
328 |
Q |
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| T |
12820365 |
ttcacatttggttatgataattcaactgacacttacaaggtggtggcct |
12820317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 282 - 325
Target Start/End: Complemental strand, 28764367 - 28764324
Alignment:
| Q |
282 |
cacatttggttatgacatttcaactaaaacttataaggtggtgg |
325 |
Q |
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| T |
28764367 |
cacatttggttatgacatttcaactggaagttataaggtggtgg |
28764324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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