View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18042_low_14 (Length: 307)
Name: NF18042_low_14
Description: NF18042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18042_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 2 - 295
Target Start/End: Original strand, 30719565 - 30719858
Alignment:
| Q |
2 |
gttccatcattaccgacaccataacctacggctgtgacaccatggtccaactcagttccacatgaaccagtaaagacaccacttttgtaaaactgaaagt |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30719565 |
gttccatcattaccgacaccataacctacggctgtgacaccatggtccaactcagttccacatgaaccagtaaagacaccacttttgtaaaactgaaagt |
30719664 |
T |
|
| Q |
102 |
cagacccactagcatcaatagctacggaaattggttgatttgccacagctttctgcagtgcctgctcattgttggcagggacatcttcatacccggtaat |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30719665 |
cagacccactagcatcaatagctacggaaattggttgatttgccacagctttctgcagtgcctgctcattgttggcagggacatcttcatacccggtaat |
30719764 |
T |
|
| Q |
202 |
ggtaactgcatggatggatgctttatttgcactgcaagttccatcaacaccttgataaggatattgagcttcagtgttgagtccatgattttga |
295 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||| |
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|
| T |
30719765 |
agtaactgcatggatggatgctttgtttgcactgcaagttccgtcaacaccttgataggggtattgagcttcagtgttgagtccatgattttga |
30719858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 2 - 295
Target Start/End: Complemental strand, 30881794 - 30881501
Alignment:
| Q |
2 |
gttccatcattaccgacaccataacctacggctgtgacaccatggtccaactcagttccacatgaaccagtaaagacaccacttttgtaaaactgaaagt |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30881794 |
gttccatcattaccgacaccataacctacggctgtgacaccatggtccaactcagttccacatgaaccagtaaagacaccacttttgtaaaactgaaagt |
30881695 |
T |
|
| Q |
102 |
cagacccactagcatcaatagctacggaaattggttgatttgccacagctttctgcagtgcctgctcattgttggcagggacatcttcatacccggtaat |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30881694 |
cagacccactagcatcaatagctacggaaattggttgatttgccacagctttctgcagtgcctgctcattgttggcagggacatcttcatacccggtaat |
30881595 |
T |
|
| Q |
202 |
ggtaactgcatggatggatgctttatttgcactgcaagttccatcaacaccttgataaggatattgagcttcagtgttgagtccatgattttga |
295 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
30881594 |
agtaactgcatggatggatgctttgtttgcactgcaagttccgtcaacaccttgataggggtattgagcttcagtgttgagtccatgattttga |
30881501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 2 - 295
Target Start/End: Original strand, 44731001 - 44731294
Alignment:
| Q |
2 |
gttccatcattaccgacaccataacctacggctgtgacaccatggtccaactcagttccacatgaaccagtaaagacaccacttttgtaaaactgaaagt |
101 |
Q |
| |
|
|||||||||||||||||||||||||| || || ||||||||||| |||||||| ||||||||||||||| |||||||||| ||||||||||| ||||||| |
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|
| T |
44731001 |
gttccatcattaccgacaccataacccacagcggtgacaccatgatccaactcggttccacatgaaccactaaagacaccgcttttgtaaaattgaaagt |
44731100 |
T |
|
| Q |
102 |
cagacccactagcatcaatagctacggaaattggttgatttgccacagctttctgcagtgcctgctcattgttggcagggacatcttcatacccggtaat |
201 |
Q |
| |
|
|||| |||||||||||||| || || ||||| ||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44731101 |
cagatccactagcatcaatggcaacagaaataggttgatttgcgacagctttttgcaatgcctgctcattgttggcagggacatcttcatacccggtaat |
44731200 |
T |
|
| Q |
202 |
ggtaactgcatggatggatgctttatttgcactgcaagttccatcaacaccttgataaggatattgagcttcagtgttgagtccatgattttga |
295 |
Q |
| |
|
|||| ||||||| ||||| ||||| |||||| |||| ||||| ||||||||||||||||| ||| |||||||| | ||||| ||||||||| |
|
|
| T |
44731201 |
ggtagctgcatgaatggacgctttgtttgcattgcatgttccgtcaacaccttgataagggtatgcggcttcagtactaagtccgtgattttga |
44731294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 16867387 - 16867681
Alignment:
| Q |
1 |
agttccatcattaccgacaccataacctacggctgtgacaccatggtccaactcagttccacatgaaccagtaaagacaccacttttgtaaaactgaaag |
100 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| || |||||||| |||||||||||||| ||||||||||||||||| ||||||||||| || |||||| |
|
|
| T |
16867387 |
agttccatcattactaacaccataacccacggcggtaacaccatgatccaactcagttccgcatgaaccagtaaagacgccacttttgtagaattgaaag |
16867486 |
T |
|
| Q |
101 |
tcagacccactagcatcaatagctacggaaattggttgatttgccacagctttctgcagtgcctgctcattgttggcagggacatcttcatacccggtaa |
200 |
Q |
| |
|
|| || |||||||||||||| ||||||||||| |||||||| ||||| ||||| || ||||||||||||||||||| ||||||||||||||||| |||| |
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|
| T |
16867487 |
tcggaaccactagcatcaatggctacggaaatcggttgattagccactgctttttgtagtgcctgctcattgttggtcgggacatcttcatacccagtaa |
16867586 |
T |
|
| Q |
201 |
tggtaactgcatggatggatgctttatttgcactgcaagttccatcaacaccttgataaggatattgagcttcagtgttgagtccatgattttga |
295 |
Q |
| |
|
|||||||||||| ||||||| |||| ||||| |||| || || ||||||||||||||||| || | ||||| || || ||||||||||||||| |
|
|
| T |
16867587 |
tggtaactgcattgatggatcctttgtttgcgttgcatgtcccgtcaacaccttgataagggtagttggcttcggtatttagtccatgattttga |
16867681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 2 - 295
Target Start/End: Complemental strand, 30892877 - 30892584
Alignment:
| Q |
2 |
gttccatcattaccgacaccataacctacggctgtgacaccatggtccaactcagttccacatgaaccagtaaagacaccacttttgtaaaactgaaagt |
101 |
Q |
| |
|
||||||||||||| | |||||||| || || || |||||||| ||||||| ||| |||||||||||||| |||||||||||||||||||| || || | |
|
|
| T |
30892877 |
gttccatcattactaatgccataacccacagcagtaacaccatgatccaactgagtaccacatgaaccagtgaagacaccacttttgtaaaattggaaat |
30892778 |
T |
|
| Q |
102 |
cagacccactagcatcaatagctacggaaattggttgatttgccacagctttctgcagtgcctgctcattgttggcagggacatcttcatacccggtaat |
201 |
Q |
| |
|
| || ||||| |||||||| |||||||||||||||||||| ||||| ||||| |||||||| | ||||||||| || |||||||||||||| || | ||| |
|
|
| T |
30892777 |
cggagccactcgcatcaatggctacggaaattggttgattagccactgctttttgcagtgcattctcattgtttgccgggacatcttcatatccagcaat |
30892678 |
T |
|
| Q |
202 |
ggtaactgcatggatggatgctttatttgcactgcaagttccatcaacaccttgataaggatattgagcttcagtgttgagtccatgattttga |
295 |
Q |
| |
|
||| | ||| || | || | || |||||||||||||||||| |||||||||||||| || |||||||||||||||| |||||||||||||||| |
|
|
| T |
30892677 |
agtagcagcaggggttgaagtttcatttgcactgcaagttccgtcaacaccttgataggggtattgagcttcagtgtggagtccatgattttga |
30892584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 2 - 295
Target Start/End: Complemental strand, 8899409 - 8899116
Alignment:
| Q |
2 |
gttccatcattaccgacaccataacctacggctgtgacaccatggtccaactcagttccacatgaaccagtaaagacaccacttttgtaaaactgaaagt |
101 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||| || |||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||| |
|
|
| T |
8899409 |
gttccatcattactgacaccataacctacggcagtgacaccgtgatccaactcagttccgcatgaaccggtaaatacaccacttttgtaaaattgaaagt |
8899310 |
T |
|
| Q |
102 |
cagacccactagcatcaatagctacggaaattggttgatttgccacagctttctgcagtgcctgctcattgttggcagggacatcttcatacccggtaat |
201 |
Q |
| |
|
|||| |||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
8899309 |
cagagccactagcatcaattgctacagaaattggttgatttgccactgctttttgcagtgcttgctcattgttggcaggaacatcttcatacccggtaat |
8899210 |
T |
|
| Q |
202 |
ggtaactgcatggatggatgctttatttgcactgcaagttccatcaacaccttgataaggatattgagcttcagtgttgagtccatgattttga |
295 |
Q |
| |
|
||| ||| || |||||||||||||||||| | || |||||||||||||| ||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
8899209 |
agtagttgcttgaatggatgctttatttgcattacatgttccatcaacaccctgataggggtattgagcttcagtgttgagtccatgattttga |
8899116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 17 - 294
Target Start/End: Complemental strand, 31727552 - 31727275
Alignment:
| Q |
17 |
acaccataacctacggctgtgacaccatggtccaactcagttccacatgaaccagtaaagacaccacttttgtaaaactgaaagtcagacccactagcat |
116 |
Q |
| |
|
|||||||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||| |||||||||| |
|
|
| T |
31727552 |
acaccataacctacaacagctacaccatgatccaactcagttccacatgaaccagtaaatacaccacttttgtaaaattggaagtcagagccactagcat |
31727453 |
T |
|
| Q |
117 |
caatagctacggaaattggttgatttgccacagctttctgcagtgcctgctcattgttggcagggacatcttcatacccggtaatggtaactgcatggat |
216 |
Q |
| |
|
|||| || || |||| |||||||| || || ||||| |||| ||||||||||| || | ||||||| || ||||||| |||||| | ||| | | |
|
|
| T |
31727452 |
caatggccaccgaaaccggttgattagctacggctttttgcaatgcctgctcatcatttacggggacattctcgtacccggaaatggttgcagcagagct |
31727353 |
T |
|
| Q |
217 |
ggatgctttatttgcactgcaagttccatcaacaccttgataaggatattgagcttcagtgttgagtccatgattttg |
294 |
Q |
| |
|
| | ||| | || | |||| ||||||||||||||||||||||| |||| |||||||||| | ||||||| |||||| |
|
|
| T |
31727352 |
gcctacttcagttttattgcatgttccatcaacaccttgataagggtattcagcttcagtgctaagtccattattttg |
31727275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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