View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18042_low_2 (Length: 640)
Name: NF18042_low_2
Description: NF18042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18042_low_2 |
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| [»] scaffold0690 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 442; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 18 - 581
Target Start/End: Complemental strand, 9369701 - 9369119
Alignment:
| Q |
18 |
aaaaaatcattaactacaaatttgaacctgtaatcactaatttctcatatttcatatcccttgctgcccactccattatgtcaaattgaaacttcctgtc |
117 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
9369701 |
aaaaaatcattaactgcaaatttgaacctgtaatcactaatttctcatatttcatatcccttgctgcccactccattatgtcaaaatgaaacttcctgtc |
9369602 |
T |
|
| Q |
118 |
tcatnnnnnnnttgaaacttcctactgtgcttctttcccgtttccaccattttactatgaaattggtttattggaagactaattgttcgtcgaattgtca |
217 |
Q |
| |
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|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
9369601 |
tcataaaaaaattgaaacttcctactctgcttctttcccgtttccaccattttactatgaaattgatttattggaagactaattgttcgtggaattgtca |
9369502 |
T |
|
| Q |
218 |
tcataaaacatatttgtcaatacctctccctgtcttctatttttcacggaaacttcactcttcttgggtcattcataacaataatggaagaaagactatt |
317 |
Q |
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||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
9369501 |
tcataaaacatatttgtcaatacctctccctttcttatatttttcatggaaacttcactcttcttgggtcattcataacaataatggaagaaggactatt |
9369402 |
T |
|
| Q |
318 |
caaaacaataatggagaaatcaaagttatttcatggtaggccatttgatggttaaacactttatgaaaatcagaagtattttcttttgttaggctagtct |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9369401 |
caaaacaataatggagaaatcaaagttatttcatggtaggccatttgatggtgaaacactttatgaaaatcagaagtattttcttttgttaggctagtct |
9369302 |
T |
|
| Q |
418 |
gtctattatcaattttaattgagtttgattagcagattttgattaagttacgatcatagtcacgatattctcttgagaagctgtgaaccgtgaattc--- |
514 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
9369301 |
gtctattatcaattttaattgagtttgattagca-attttgattaagttacgatcatagtcacgatattctcttgagaagctgtgaactgtgaattcgta |
9369203 |
T |
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| Q |
515 |
-----------------gtacacgtgtactagttcacggtactttaacaaattggtttgcacaaattctcctctaaagtgattc |
581 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
9369202 |
cacgtgtacggtacattgtacacgtgtactagttcacggtactttaacaaattggtttgcataaattctcctctaaagtgattc |
9369119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 9390908 - 9390673
Alignment:
| Q |
18 |
aaaaaatcattaactacaaatttgaacctgtaatcactaatttctcatatttcatatcccttgctgcccactccattatgtcaaattgaaacttcctgtc |
117 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| | ||||| ||||||||||| ||||||||||| || |
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| T |
9390908 |
aaaaaatcattaactacaaatttaaacctgtaatcactaatttctcatatttcatatctcttgcttctcactcaattatgtcaaactgaaacttcctatc |
9390809 |
T |
|
| Q |
118 |
tcatnnnnnnnttgaaacttcctactgtgcttctttcccgtttccaccattttactatgaaattggtttattggaagactaattgttcgtcgaattgtca |
217 |
Q |
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| T |
9390808 |
cgataaaagaaatgaaacttcctactgtgcttctttcccgtttccacaattttactatgaaattggtttattagaaaactaattgttcgtcgaattgtcg |
9390709 |
T |
|
| Q |
218 |
tcataaaacatatttgtcaatacctctccctgtctt |
253 |
Q |
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|||||||| |||||||||||||||||||||| |||| |
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| T |
9390708 |
tcataaaatatatttgtcaatacctctccctttctt |
9390673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 66 - 277
Target Start/End: Complemental strand, 9374134 - 9373927
Alignment:
| Q |
66 |
atttcatatcccttgctgcccactccattatgtcaaattgaaacttcctgtctcatnnnnnnnttgaaacttcctactgtgcttctttcccgtttccacc |
165 |
Q |
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|||||||||| |||||||||||||| ||||||||||| |||||||||||| | || |||||||| || |||||||||||||||||||| |
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| T |
9374134 |
atttcatatctcttgctgcccactcgattatgtcaaaatgaaacttcctgcatgataaagaaaacgaaacttc----tgcgcttctttcccgtttccacc |
9374039 |
T |
|
| Q |
166 |
attttactatgaaattggtttattggaagactaattgttcgtcgaattgtcatcataaaacatatttgtcaatacctctccctgtcttctatttttcacg |
265 |
Q |
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||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||| |
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| T |
9374038 |
attttactatggaattggtttattagaagactaattgttcgtcgaattgtcatcataaaacatatttgtcaatacctctccctttcttatatctttcaca |
9373939 |
T |
|
| Q |
266 |
gaaacttcactc |
277 |
Q |
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|||||||||||| |
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| T |
9373938 |
gaaacttcactc |
9373927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 273 - 446
Target Start/End: Complemental strand, 9373901 - 9373735
Alignment:
| Q |
273 |
cactcttcttgggtcattcataacaataatggaagaaagactattcaaaacaataatggagaaatcaaagttatttcatggtaggccatttgatggttaa |
372 |
Q |
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|||||||||||| |||||||||||| ||||||| || |||||||||||||||| |||||||||||||| ||||||||| ||||||| |||||| || |
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| T |
9373901 |
cactcttcttggatcattcataacactaatggagga----ctattcaaaacaataaccgagaaatcaaagttctttcatggtgggccattcgatggtgaa |
9373806 |
T |
|
| Q |
373 |
acactttatgaaaatcagaagtattttcttttgttaggctagtctgtctattatcaattttaattgagtttgat |
446 |
Q |
| |
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|||| |||||||||||||||||| ||| ||||||||| | ||||||||||||||||||||||| ||||||||| |
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| T |
9373805 |
acac--tatgaaaatcagaagtatcttc-tttgttaggttggtctgtctattatcaattttaatagagtttgat |
9373735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 384 - 527
Target Start/End: Complemental strand, 9390571 - 9390442
Alignment:
| Q |
384 |
aaatcagaagtattttcttttgttaggctagtctgtctattatcaattttaattgagtttgattagcagattttgattaagttacgatcatagtcacgat |
483 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||| ||||||| ||| ||| |
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| T |
9390571 |
aaatcagaagtattttcttttgttaggctagtctgtctatgatcaattttaat--------------aaattttgattaagttatgatcatattcaggat |
9390486 |
T |
|
| Q |
484 |
attctcttgagaagctgtgaaccgtgaattcgtacacgtgtact |
527 |
Q |
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| T |
9390485 |
attctcttgacaagctgtgaaccgtgaattggtacacatgtact |
9390442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 273 - 330
Target Start/End: Complemental strand, 9390626 - 9390573
Alignment:
| Q |
273 |
cactcttcttgggtcattcataacaataatggaagaaagactattcaaaacaataatg |
330 |
Q |
| |
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|||||||||||||||||||||||||| ||||| | |||||||||||||||||||| |
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| T |
9390626 |
cactcttcttgggtcattcataacaacaatgg----aggactattcaaaacaataatg |
9390573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 273 - 480
Target Start/End: Original strand, 15908048 - 15908247
Alignment:
| Q |
273 |
cactcttcttgggtcattcataacaataatggaagaaagactattcaaaaca----ataatggagaaatcaaagttatttcatggtaggccatttgatgg |
368 |
Q |
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|||| ||||||||||||||||||||||||||| | |||||||||||||| |||||||||||| ||||||||||| |||| ||||||| ||||| |
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| T |
15908048 |
cacttttcttgggtcattcataacaataatgg----aggactattcaaaacaatatataatggagaaa-caaagttatttaatggcgggccattcgatgg |
15908142 |
T |
|
| Q |
369 |
ttaaacactttatgaaaatcagaagtattttcttttgttaggctagtctgtctattatcaatttta--attgagtttgattagcagattttgattaagtt |
466 |
Q |
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| ||||||||||| ||||||||| |||| ||||||||| ||||||||||| ||||||| ||||| ||||||||||||| ||||||||| || |
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| T |
15908143 |
tgaaacactttat--------taagtattttatttttttaggctagcctgtctattattaattttaatattgattttgattagcaga-tttgattaattt |
15908233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0690 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0690
Description:
Target: scaffold0690; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 273 - 571
Target Start/End: Complemental strand, 4209 - 3920
Alignment:
| Q |
273 |
cactcttcttgggtcattcataacaataatggaagaaagactattcaaaaca---ataatggagaaatcaaagttatttcatggtaggccatttgatggt |
369 |
Q |
| |
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|||| |||||||||||||||||| |||||||||||| ||||||||| | |||||||||||| ||||||||||| |||| ||||||| |||| | |
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| T |
4209 |
cacttttcttgggtcattcataataataatggaaga----ctattcaaacaatatataatggagaaaccaaagttatttaatggcgggccattcgatgat |
4114 |
T |
|
| Q |
370 |
taaacactttatgaaaatcagaagtattttcttttgttaggctagtctgtctattatcaatttta--attgagtttgattagcagattttgattaagtta |
467 |
Q |
| |
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||||||||||| || |||| || |||| ||||||||| ||||||||||| ||||||| ||||| ||||||||||||| ||||||||| ||| |
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| T |
4113 |
gaaacactttattaa--------gtatattatttttttaggctagcctgtctattattaattttaatattgattttgattagcaga-tttgattaattta |
4023 |
T |
|
| Q |
468 |
cgatcatagtcacgatattctcttgagaagctgtgaaccgtgaattcgtacacgtgtactagttcacggtactttaacaaattggtttgcacaaattctc |
567 |
Q |
| |
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|||| |||||| ||||| |||| ||| || ||||||||||| | | |||| |||||| || ||||||||| |||||||| ||| |||||||| |
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| T |
4022 |
tgatcgtagtcaaataattcttttgacaagtggtaaaccgtgaattgattcgggtgt-ctagtttgcgatactttaacgaattggttcgcataaattctc |
3924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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