View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18042_low_22 (Length: 253)
Name: NF18042_low_22
Description: NF18042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18042_low_22 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 253
Target Start/End: Original strand, 44109460 - 44109696
Alignment:
| Q |
17 |
cttattcagttgtgctattgagtggacttgcaagtgtcaagtctctcgcactatcagcgaacgctttgaaggtatgtattatcttttatctgatcatcat |
116 |
Q |
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| T |
44109460 |
cttattcagttgtgctattgagtggacttgcaagtgtcaagtctctcgcactatcagcaaacgctttgaaggtatgtattatcttttatctgatcatcat |
44109559 |
T |
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| Q |
117 |
catttatctttttaaatattgtgtataatataatgcgtattgatgcgcaatgttgcctttagttgtgtttcccatgcaaatctatttctgttacannnnn |
216 |
Q |
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| T |
44109560 |
catttatctttttaaatattgtgtataatataatgtgtattgatgcgcaatgttgcctttagttgtgtttcccatgcaaatctatttctgtttcattttt |
44109659 |
T |
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| Q |
217 |
nnagtatcctttctatgcaattgatgatgtccatctc |
253 |
Q |
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| T |
44109660 |
ttaggatcctctctatgcaattgatcatctccatctc |
44109696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 87 - 202
Target Start/End: Original strand, 40276437 - 40276557
Alignment:
| Q |
87 |
ggtatgtattatcttttatctgatcatcatcatttatctttttaaatattgtgtataatata-----atgcgtattgatgcgcaatgttgcctttagttg |
181 |
Q |
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| T |
40276437 |
ggtatgtattgtcttttttctgaacatcttcatttatctttttaaatattgtgtataatataataagatgcgtattgacgcacaatgttgcctttggctg |
40276536 |
T |
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| Q |
182 |
tgtttcccatgcaaatctatt |
202 |
Q |
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| T |
40276537 |
tgtttcccatgcaagtctatt |
40276557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 144
Target Start/End: Complemental strand, 40450893 - 40450765
Alignment:
| Q |
17 |
cttattcagttgtgctattgagtggacttgcaagtgtcaagtctctcgcactatcagcgaacgctttgaaggtatgtattatcttttatctgatcatcat |
116 |
Q |
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||||||| ||||||||| |||||||||||||||||||||||||||| |||||||| | || |||| | ||||||||||| ||||| ||| |||||| | |
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| T |
40450893 |
cttattcggttgtgctactgagtggacttgcaagtgtcaagtctcttacactatcaaaggacacttttagggtatgtattaccttttctctcatcatctt |
40450794 |
T |
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| Q |
117 |
cattt-atctttttaaatattgtgtataa |
144 |
Q |
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| T |
40450793 |
catttaatctttttaaatattgtgtataa |
40450765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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