View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18042_low_24 (Length: 244)
Name: NF18042_low_24
Description: NF18042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18042_low_24 |
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| [»] scaffold0009 (2 HSPs) |
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Alignment Details
Target: scaffold0009 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 40461 - 40236
Alignment:
| Q |
1 |
aaatcaaacaacatacgtaatattgatgatacaaaaagaggaaggatgcttctacctgaagcacattcagaaactgcacattataaacagctctaaaagg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40461 |
aaatcaaacaacatacgtaatattgatgatacaaaaagaggaaggatgcttctacctgaagcacattcagaaactgcacattataaacagctctaaaagg |
40362 |
T |
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| Q |
101 |
aacttcgaataaacgaaaattagctttgataagattcgataacaagggtttttcaaatttctctatcgctgtactacggacattcagtttaatatataaa |
200 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
40361 |
aacttcgaataaacgaaaattagctttgatgagattcgataacaagggtttttcaaagttctctatcgctgtactacggacattcagtttaatatataaa |
40262 |
T |
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| Q |
201 |
gttttcaaatcctccaatttgggact |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
40261 |
gttttcaaatcctccaatttgggact |
40236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 33843 - 33609
Alignment:
| Q |
1 |
aaatcaaacaacatacgtaatattgatgatacaaaaagaggaa-ggatgcttc--------tacctgaagcacattcagaaactgcacattataaacagc |
91 |
Q |
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|||||||||||||||||||||| ||||||||| |||| | || ||||||||| ||||| ||| ||||| |||||||||||||||||||| || |
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| T |
33843 |
aaatcaaacaacatacgtaatagtgatgataccaaaaaaaaaatggatgcttcatatataatacctcaagtacatttagaaactgcacattataaactgc |
33744 |
T |
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| Q |
92 |
tctaaaaggaacttcgaataaacgaaaattagctttgataagattcgataacaagggtttttcaaatttctctatcgctgtactacggacattcagttta |
191 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||| ||||| || || |||||||| |
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| T |
33743 |
tctaaaaggaacttcgaataaacgaaaattagctttgatgagattggataacaagggtttttcaaagttctctatcactgtaacaccgatattcagttgg |
33644 |
T |
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| Q |
192 |
atatataaagttttcaaatcctccaatttgggact |
226 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
33643 |
atatataaagttttcaaatcctccaatttgggact |
33609 |
T |
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