View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18042_low_3 (Length: 486)
Name: NF18042_low_3
Description: NF18042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18042_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 17 - 471
Target Start/End: Original strand, 40765197 - 40765651
Alignment:
| Q |
17 |
caaaggcaaagcattctacatgcgcctcaatgatgacttaaagacagtggctgctatggatgttcttgtcccaaatgtatgtattctgtttgttttattt |
116 |
Q |
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| T |
40765197 |
caaaggcaaagcattctacatgcgcctcaatgatgacttaaagacagtggctgctatggatgttcttgtcccaaatgtatgtattctgtttgttttattt |
40765296 |
T |
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| Q |
117 |
taacatgtctatggtgcttgggaaaagaactatagaagtcttatcatcatagtaagcagtgtagacgagaattagaaataaagagagatcgagaaatgtg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40765297 |
taacatgtctatggtgcttgggaaaagaactatagaagtcctatcatcatagtaagcagtgtagacgagaattagaaataaagagagatcgagaaatgtg |
40765396 |
T |
|
| Q |
217 |
atttacttattatgatactgagcgggggtacagatgagttgtatatgttatacctagttgcttttgt-tttggcgtaattggaatttgtaactgtaattt |
315 |
Q |
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| T |
40765397 |
atttactcattatgatactgagcgggggtacagatgagttgtatatgttatacctagttgcttttgtggttggcgtaattggaatttgtaactgtaattt |
40765496 |
T |
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| Q |
316 |
caggtgggagagttacttggtggaggccaaagggaggagcgttatgatgtcattcaacaaaggtaaattataatttctgcttatcctgattcataaataa |
415 |
Q |
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| T |
40765497 |
caggtgggagagttaattggtggaggccaaagggaggagcgttatgatgtcattcaacaaaggtaaattataatttccgcttatcctgattcataaataa |
40765596 |
T |
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| Q |
416 |
atgtgctctcgttaaggannnnnnnactttattttccttgtttctattgttataat |
471 |
Q |
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| T |
40765597 |
atgtgctcttgttaaggattctttg-ctttattttccttgtttctattgttataat |
40765651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 154; Significance: 2e-81; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 23 - 212
Target Start/End: Original strand, 42912750 - 42912939
Alignment:
| Q |
23 |
caaagcattctacatgcgcctcaatgatgacttaaagacagtggctgctatggatgttcttgtcccaaatgtatgtattctgtttgttttattttaacat |
122 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||| | |||||||||||||| |
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| T |
42912750 |
caaagcattctacatgcgcctcaatgatgacttagagacagtggctgctatggatgttcttgtcccaaaggtatgtatcctgtatattttattttaacat |
42912849 |
T |
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| Q |
123 |
gtctatggtgcttgggaaaagaactatagaagtcttatcatcatagtaagcagtgtagacgagaattagaaataaagagagatcgagaaa |
212 |
Q |
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| T |
42912850 |
gtctatggtgcttgggaaaagaactacagaagtcctaccatcgtagtaagcagtgtagacgagaattagaaataaagagagatcgagaaa |
42912939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 266 - 424
Target Start/End: Original strand, 42914097 - 42914256
Alignment:
| Q |
266 |
atacctagttgcttttgtt-ttggcgtaattggaatttgtaactgtaatttcaggtgggagagttacttggtggaggccaaagggaggagcgttatgatg |
364 |
Q |
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|||||||||||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
42914097 |
atacctagttgcttttgtggttggcgtaataggaaagtgtaactgtaatttcaggttggagagttaattggtggaagccaaagggaggagcgttatgatg |
42914196 |
T |
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| Q |
365 |
tcattcaacaaaggtaaattataatttctgcttatcctgattcataaataaatgtgctct |
424 |
Q |
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| T |
42914197 |
tcattcaacaaaggtaaattataatttccgcttaccctaattcttaaataaatttgctct |
42914256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 210 - 266
Target Start/End: Original strand, 42912991 - 42913047
Alignment:
| Q |
210 |
aaatgtgatttacttattatgatactgagcgggggtacagatgagttgtatatgtta |
266 |
Q |
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| T |
42912991 |
aaatgcgatttacttgttatgatactgagcgggggtacatatgagttatatatgtta |
42913047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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