View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18042_low_6 (Length: 456)

Name: NF18042_low_6
Description: NF18042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18042_low_6
NF18042_low_6
[»] chr7 (16 HSPs)
chr7 (93-376)||(3221787-3222081)
chr7 (24-72)||(2094461-2094509)
chr7 (24-72)||(42941553-42941601)
chr7 (24-72)||(1964019-1964067)
chr7 (24-72)||(8295567-8295615)
chr7 (24-72)||(28882428-28882476)
chr7 (241-304)||(3186435-3186498)
chr7 (30-72)||(47379061-47379103)
chr7 (23-64)||(8295635-8295676)
chr7 (23-72)||(31902143-31902192)
chr7 (24-64)||(1964087-1964127)
chr7 (30-72)||(8294542-8294584)
chr7 (30-64)||(31902596-31902630)
chr7 (23-64)||(42942072-42942113)
chr7 (28-64)||(42941497-42941533)
chr7 (24-64)||(47379129-47379169)
[»] chr8 (16 HSPs)
chr8 (24-72)||(28937065-28937113)
chr8 (23-72)||(22201871-22201920)
chr8 (24-72)||(28967773-28967821)
chr8 (24-72)||(28990536-28990584)
chr8 (24-72)||(764939-764987)
chr8 (24-72)||(38781344-38781392)
chr8 (24-64)||(38781850-38781890)
chr8 (25-64)||(9513189-9513228)
chr8 (30-72)||(764500-764542)
chr8 (31-64)||(17608532-17608565)
chr8 (24-65)||(28937562-28937603)
chr8 (24-65)||(28991029-28991070)
chr8 (24-72)||(9513248-9513295)
chr8 (25-65)||(28967276-28967316)
chr8 (24-72)||(36181518-36181566)
chr8 (24-64)||(38781284-38781324)
[»] chr5 (24 HSPs)
chr5 (24-72)||(1628948-1628996)
chr5 (24-72)||(28864133-28864181)
chr5 (24-72)||(39599455-39599503)
chr5 (24-72)||(42257375-42257423)
chr5 (24-72)||(42501235-42501283)
chr5 (26-72)||(43109540-43109586)
chr5 (24-72)||(13359881-13359929)
chr5 (24-72)||(35894227-35894274)
chr5 (24-72)||(42258067-42258115)
chr5 (24-72)||(42866528-42866576)
chr5 (24-72)||(43110226-43110274)
chr5 (25-64)||(12216179-12216218)
chr5 (25-64)||(42866026-42866065)
chr5 (30-72)||(57683-57725)
chr5 (30-64)||(1629456-1629490)
chr5 (30-72)||(13360301-13360343)
chr5 (23-64)||(35894744-35894785)
chr5 (23-64)||(42257314-42257355)
chr5 (23-56)||(43126616-43126649)
chr5 (24-56)||(1629404-1629436)
chr5 (24-72)||(10433068-10433116)
chr5 (24-64)||(13359821-13359861)
chr5 (24-64)||(39599395-39599435)
chr5 (24-64)||(39599976-39600016)
[»] chr2 (21 HSPs)
chr2 (24-72)||(11823656-11823704)
chr2 (24-72)||(22962540-22962588)
chr2 (24-72)||(34789210-34789258)
chr2 (24-72)||(44425735-44425783)
chr2 (26-72)||(2940172-2940218)
chr2 (23-72)||(38815996-38816045)
chr2 (24-72)||(22961852-22961900)
chr2 (24-66)||(31076230-31076272)
chr2 (30-72)||(32525773-32525815)
chr2 (24-65)||(36067169-36067210)
chr2 (24-65)||(38815515-38815556)
chr2 (24-72)||(19975250-19975298)
chr2 (24-64)||(22962608-22962648)
chr2 (24-64)||(32525841-32525881)
chr2 (24-64)||(39317612-39317652)
chr2 (24-72)||(39317672-39317720)
chr2 (24-64)||(44425675-44425715)
chr2 (23-70)||(1858938-1858985)
chr2 (23-64)||(34788872-34788913)
chr2 (23-64)||(38816063-38816104)
chr2 (24-56)||(19058071-19058103)
[»] chr1 (14 HSPs)
chr1 (24-72)||(6810607-6810655)
chr1 (24-72)||(26617433-26617481)
chr1 (24-72)||(37596930-37596978)
chr1 (24-72)||(5564749-5564797)
chr1 (28-72)||(37596785-37596829)
chr1 (24-64)||(37596997-37597037)
chr1 (25-64)||(37596722-37596761)
chr1 (24-55)||(52214022-52214053)
chr1 (30-64)||(52213968-52214002)
chr1 (30-72)||(52214475-52214517)
chr1 (24-64)||(5564817-5564857)
chr1 (24-64)||(6505250-6505290)
chr1 (28-56)||(14922097-14922125)
chr1 (24-64)||(52214543-52214583)
[»] chr6 (11 HSPs)
chr6 (28-72)||(6180675-6180719)
chr6 (24-72)||(17335241-17335289)
chr6 (30-72)||(15273293-15273335)
chr6 (30-72)||(29361719-29361761)
chr6 (28-70)||(31066333-31066375)
chr6 (24-72)||(17192362-17192410)
chr6 (24-72)||(29362140-29362188)
chr6 (29-72)||(24813903-24813946)
chr6 (23-64)||(29362208-29362249)
chr6 (31-72)||(32754832-32754873)
chr6 (24-64)||(6180611-6180651)
[»] chr4 (10 HSPs)
chr4 (24-72)||(38739341-38739389)
chr4 (24-65)||(34268279-34268320)
chr4 (24-72)||(45753278-45753326)
chr4 (28-72)||(50772874-50772918)
chr4 (29-72)||(41551181-41551224)
chr4 (30-72)||(34267855-34267897)
chr4 (23-64)||(34267788-34267829)
chr4 (24-65)||(45752828-45752869)
chr4 (24-64)||(34268340-34268380)
chr4 (24-64)||(50772810-50772850)
[»] chr3 (8 HSPs)
chr3 (24-72)||(33222564-33222612)
chr3 (24-72)||(34020229-34020277)
chr3 (24-72)||(38929491-38929539)
chr3 (24-72)||(38852625-38852673)
chr3 (23-64)||(38852564-38852605)
chr3 (28-72)||(13935286-13935330)
chr3 (24-56)||(23615816-23615848)
chr3 (24-72)||(50681307-50681354)
[»] scaffold0045 (1 HSPs)
scaffold0045 (27-72)||(75347-75392)
[»] scaffold0508 (1 HSPs)
scaffold0508 (23-55)||(360-392)
[»] scaffold0341 (1 HSPs)
scaffold0341 (24-64)||(6928-6968)


Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 93 - 376
Target Start/End: Original strand, 3221787 - 3222081
Alignment:
Q  93 tgaatacacatttcactgctaattttgatgcattttaccgtgaaaatggagaagctataaa------------------cgtgcgtccatgttaaggcag 174  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||                  |||||||||||||||||||||    
T  3221787 tgaatacacatttcactgcaaattttgatgcattttactgtgaaaatggagaagctataaattgtagcttctaacagaacgtgcgtccatgttaaggcag 3221886  T
Q  175 ccactgaaaacaaaacacatactatatataatattatggaagaaagaatctcaagtagttcgaaatatgccattcatccattagtgggaatctttagaga 274  Q
    ||||||||||||||||||||||||||||||||||   ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3221887 ccactgaaaacaaaacacatactatatataatat---ggaaggaagaatctcaagtagtttgaaatatgccattcatccattagtgggaatctttagaga 3221983  T
Q  275 tgtcattttcgtctgtttgcctctcctttgacttgctacctagctaccttaaactcccaagttccacctatcaacacacacatcatgtctactcatcact 374  Q
    |||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3221984 tgtcattttcgtctgtttgcctctcctttgacttgctac----ctaccttaaactcccaagttccacctatcaacacacacatcatgtctactcatcact 3222079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 2094509 - 2094461
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  2094509 cccccttattttaaaactcggaattttaccccctctattttacgttttt 2094461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 42941553 - 42941601
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  42941553 cccccttattttaaaactcggaattttaccccctctattttacgttttt 42941601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 1964067 - 1964019
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||||||||||| ||||| ||||||||||||||||| ||||||||||||    
T  1964067 cccccttattttgaaactcggaattttaccccctctattttacgttttt 1964019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 8295615 - 8295567
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||||||||||||||||| | ||||||||||||||| ||||||||||||    
T  8295615 cccccttattttaaaactcgaaattttaccccctctattttacgttttt 8295567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 28882428 - 28882476
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||||||||||||||||| | ||||||||||||||| ||||||||||||    
T  28882428 cccccttattttaaaactcgaaattttaccccctctattttacgttttt 28882476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 241 - 304
Target Start/End: Complemental strand, 3186498 - 3186435
Alignment:
Q  241 atgccattcatccattagtgggaatctttagagatgtcattttcgtctgtttgcctctcctttg 304  Q
    ||||||| |||||||||||||||||||  ||||| |||||||  |||| |||||||||||||||    
T  3186498 atgccatgcatccattagtgggaatctcaagagaagtcatttctgtctctttgcctctcctttg 3186435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 47379103 - 47379061
Alignment:
Q  30 tattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||||||||||| ||||||||||||||||| ||||||||||||    
T  47379103 tattttaaaactcggaattttaccccctctattttacgttttt 47379061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 8295676 - 8295635
Alignment:
Q  23 acccccttattttaaaacttggaattttaccccctctttttt 64  Q
    ||||||||||||||||||| ||||||||||||||||| ||||    
T  8295676 acccccttattttaaaactcggaattttaccccctctatttt 8295635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 31902143 - 31902192
Alignment:
Q  23 acccccttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||||||||||||||| || | ||||||||||||||| ||||||||||||    
T  31902143 acccccttattttaaatctcgaaattttaccccctctattttacgttttt 31902192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 1964127 - 1964087
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctctttttt 64  Q
    ||||| |||||||||||||||||||||||||||||| ||||    
T  1964127 cccccctattttaaaacttggaattttaccccctctatttt 1964087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 72
Target Start/End: Original strand, 8294542 - 8294584
Alignment:
Q  30 tattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||||||||||| ||||||||||||||||| ||||| ||||||    
T  8294542 tattttaaaactcggaattttaccccctctattttatgttttt 8294584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 64
Target Start/End: Complemental strand, 31902630 - 31902596
Alignment:
Q  30 tattttaaaacttggaattttaccccctctttttt 64  Q
    |||||||||||||||||||||||||||||| ||||    
T  31902630 tattttaaaacttggaattttaccccctctatttt 31902596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 42942113 - 42942072
Alignment:
Q  23 acccccttattttaaaacttggaattttaccccctctttttt 64  Q
    |||||| |||||||||||| ||||||||||||||||| ||||    
T  42942113 acccccctattttaaaactcggaattttaccccctctatttt 42942072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 42941497 - 42941533
Alignment:
Q  28 cttattttaaaacttggaattttaccccctctttttt 64  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  42941497 cttattttaaaatttggaattttaccccctctatttt 42941533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 47379169 - 47379129
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctctttttt 64  Q
    ||||| |||||||||||| ||||||||||||||||| ||||    
T  47379169 cccccctattttaaaactcggaattttaccccctctatttt 47379129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 28937065 - 28937113
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  28937065 cccccttattttaaaacttggaattttaccccctctattttacgttttt 28937113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 22201871 - 22201920
Alignment:
Q  23 acccccttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  22201871 acccccttattttaaaactcggaattttaccccctctattttacgttttt 22201920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 28967821 - 28967773
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  28967821 cccccttattttaaaactcggaattttaccccctctattttacgttttt 28967773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 28990536 - 28990584
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  28990536 cccccttattttaaaactcggaattttaccccctctattttacgttttt 28990584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 764987 - 764939
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||||||||||||||| | ||||||||||||||||| ||||| ||||||    
T  764987 cccccttattttaaaattcggaattttaccccctctattttatgttttt 764939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 38781344 - 38781392
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    ||||| |||||||||||| |||||||||||||| || ||||||||||||    
T  38781344 cccccatattttaaaactcggaattttacccccgctattttacgttttt 38781392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 38781890 - 38781850
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctctttttt 64  Q
    |||||||||||||||||| ||||||||||||||||| ||||    
T  38781890 cccccttattttaaaactcggaattttaccccctctatttt 38781850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 9513189 - 9513228
Alignment:
Q  25 ccccttattttaaaacttggaattttaccccctctttttt 64  Q
    ||||||||||||||||| ||||||||||||||||| ||||    
T  9513189 ccccttattttaaaactcggaattttaccccctctatttt 9513228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 72
Target Start/End: Original strand, 764500 - 764542
Alignment:
Q  30 tattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||||||||||| ||||||||||||||||| ||||| ||||||    
T  764500 tattttaaaactcggaattttaccccctctattttatgttttt 764542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 17608532 - 17608565
Alignment:
Q  31 attttaaaacttggaattttaccccctctttttt 64  Q
    ||||||||||||||||||||||||||||| ||||    
T  17608532 attttaaaacttggaattttaccccctctctttt 17608565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 28937603 - 28937562
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctctttttta 65  Q
    ||||| |||||||||||| ||||||||||||||||| |||||    
T  28937603 cccccctattttaaaactcggaattttaccccctctatttta 28937562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 28991070 - 28991029
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctctttttta 65  Q
    ||||| |||||||||||| ||||||||||||||||| |||||    
T  28991070 cccccctattttaaaactcggaattttaccccctctatttta 28991029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 9513248 - 9513295
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    ||||||||||||||||||  |||||||| ||||||| ||||||||||||    
T  9513248 cccccttattttaaaactcagaatttta-cccctctattttacgttttt 9513295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 28967276 - 28967316
Alignment:
Q  25 ccccttattttaaaacttggaattttaccccctctttttta 65  Q
    |||| |||||||||||| ||||||||||||||||| |||||    
T  28967276 ccccctattttaaaactcggaattttaccccctctatttta 28967316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 36181566 - 36181518
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    ||||||||||||||| || | |||||||||| |||| ||||||||||||    
T  36181566 cccccttattttaaacctcgaaattttaccctctctattttacgttttt 36181518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 38781284 - 38781324
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctctttttt 64  Q
    ||||| |||||||||||| ||||||||||||||||| ||||    
T  38781284 cccccctattttaaaactcggaattttaccccctctatttt 38781324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 1628948 - 1628996
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  1628948 cccccttattttaaaactcggaattttaccccctctattttacgttttt 1628996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 28864181 - 28864133
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  28864181 cccccttattttaaaactcggaattttaccccctctattttacgttttt 28864133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 39599455 - 39599503
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  39599455 cccccttattttaaaactcggaattttaccccctctattttacgttttt 39599503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 42257375 - 42257423
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  42257375 cccccttattttaaaactcggaattttaccccctctattttacgttttt 42257423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 42501235 - 42501283
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  42501235 cccccttattttaaaactcggaattttaccccctctattttacgttttt 42501283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 43109540 - 43109586
Alignment:
Q  26 cccttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||    
T  43109540 cccttattttaaaactcggaattttaccccctctattttacgttttt 43109586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 13359881 - 13359929
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||||||||||||||||| ||||||||||||||||| ||||| ||||||    
T  13359881 cccccttattttaaaactcggaattttaccccctctattttatgttttt 13359929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 35894227 - 35894274
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  35894227 cccccttattttaaaacttggaatttta-cccctctattttacgttttt 35894274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 42258115 - 42258067
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||||||||||||||||| ||||||||||||||||| |||||| |||||    
T  42258115 cccccttattttaaaactcggaattttaccccctctattttaccttttt 42258067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 42866576 - 42866528
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||||||||||||||||| |||||||||||| |||| ||||||||||||    
T  42866576 cccccttattttaaaactcggaattttacccactctattttacgttttt 42866528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 43110274 - 43110226
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||||||||||||||||| ||||||||||||||||| |||||| |||||    
T  43110274 cccccttattttaaaactcggaattttaccccctctattttaccttttt 43110226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 64
Target Start/End: Complemental strand, 12216218 - 12216179
Alignment:
Q  25 ccccttattttaaaacttggaattttaccccctctttttt 64  Q
    |||| |||||||||||||||||||||||||||||| ||||    
T  12216218 ccccctattttaaaacttggaattttaccccctctatttt 12216179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 42866026 - 42866065
Alignment:
Q  25 ccccttattttaaaacttggaattttaccccctctttttt 64  Q
    |||| |||||||||||||||||||||||||||||| ||||    
T  42866026 ccccctattttaaaacttggaattttaccccctctatttt 42866065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 57725 - 57683
Alignment:
Q  30 tattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||||||||||| ||||||||||||| ||| ||||||||||||    
T  57725 tattttaaaactcggaattttaccccatctattttacgttttt 57683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 64
Target Start/End: Complemental strand, 1629490 - 1629456
Alignment:
Q  30 tattttaaaacttggaattttaccccctctttttt 64  Q
    |||||||||||||||||||||||||||||| ||||    
T  1629490 tattttaaaacttggaattttaccccctctatttt 1629456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 13360343 - 13360301
Alignment:
Q  30 tattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||||||||||| ||||||||||||||||| ||||| ||||||    
T  13360343 tattttaaaactcggaattttaccccctctattttatgttttt 13360301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 35894785 - 35894744
Alignment:
Q  23 acccccttattttaaaacttggaattttaccccctctttttt 64  Q
    |||||| |||||||||||| ||||||||||||||||| ||||    
T  35894785 acccccctattttaaaactcggaattttaccccctctatttt 35894744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 42257314 - 42257355
Alignment:
Q  23 acccccttattttaaaacttggaattttaccccctctttttt 64  Q
    |||||| |||||||||||| ||||||||||||||||| ||||    
T  42257314 acccccctattttaaaactcggaattttaccccctctatttt 42257355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 43126649 - 43126616
Alignment:
Q  23 acccccttattttaaaacttggaattttaccccc 56  Q
    |||||| |||||||||||||||||||||||||||    
T  43126649 acccccctattttaaaacttggaattttaccccc 43126616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 1629436 - 1629404
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccc 56  Q
    |||||||||||||||||| ||||||||||||||    
T  1629436 cccccttattttaaaactcggaattttaccccc 1629404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 10433068 - 10433116
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||||||||||||||||| |||||||||||| |||  |||||| |||||    
T  10433068 cccccttattttaaaactcggaattttaccctctcagttttacattttt 10433116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 13359821 - 13359861
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctctttttt 64  Q
    ||||| |||||||||||| ||||||||||||||||| ||||    
T  13359821 cccccctattttaaaactcggaattttaccccctctatttt 13359861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 39599395 - 39599435
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctctttttt 64  Q
    ||||| |||||||||||| ||||||||||||||||| ||||    
T  39599395 cccccctattttaaaactcggaattttaccccctctatttt 39599435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 39600016 - 39599976
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctctttttt 64  Q
    ||||| |||||||||||| ||||||||||||||||| ||||    
T  39600016 cccccctattttaaaactcggaattttaccccctctatttt 39599976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 11823656 - 11823704
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  11823656 cccccttattttaaaactcggaattttaccccctctgttttacgttttt 11823704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 22962588 - 22962540
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  22962588 cccccttattttaaaactcggaattttaccccctctattttacgttttt 22962540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 34789258 - 34789210
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  34789258 cccccttattttaaaactcggaattttaccccctctattttacgttttt 34789210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 44425735 - 44425783
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  44425735 cccccttattttaaaactcggaattttaccccctctattttacgttttt 44425783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 2940172 - 2940218
Alignment:
Q  26 cccttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||    
T  2940172 cccttattttaaaactcggaattttaccccctctattttacgttttt 2940218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 38816045 - 38815996
Alignment:
Q  23 acccccttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    ||||||||||||||||||| ||||||||||| ||||| ||||||||||||    
T  38816045 acccccttattttaaaactcggaattttaccacctctattttacgttttt 38815996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 22961852 - 22961900
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||||||||||||||||| ||||||||||||||||| |||||| |||||    
T  22961852 cccccttattttaaaactcggaattttaccccctctattttaccttttt 22961900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 66
Target Start/End: Original strand, 31076230 - 31076272
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctcttttttac 66  Q
    |||||||||||||||||| ||||||||||||||||| ||||||    
T  31076230 cccccttattttaaaactcggaattttaccccctctattttac 31076272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 32525815 - 32525773
Alignment:
Q  30 tattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||||||||||| ||||||||||||||||| ||||||||||||    
T  32525815 tattttaaaactcggaattttaccccctctattttacgttttt 32525773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 36067169 - 36067210
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctctttttta 65  Q
    |||||||||||||||||| ||||||||||||||||| |||||    
T  36067169 cccccttattttaaaactcggaattttaccccctctatttta 36067210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 38815515 - 38815556
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctctttttta 65  Q
    ||||| |||||||||||||||||||||||||||||| |||||    
T  38815515 cccccctattttaaaacttggaattttaccccctctatttta 38815556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 19975298 - 19975250
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||| ||||||||||||| | ||||||||||||||| ||||||||||||    
T  19975298 cccctttattttaaaactcgaaattttaccccctctattttacgttttt 19975250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 22962648 - 22962608
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctctttttt 64  Q
    ||||| |||||||||||||||||||||||||||||| ||||    
T  22962648 cccccctattttaaaacttggaattttaccccctctatttt 22962608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 32525881 - 32525841
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctctttttt 64  Q
    ||||| |||||||||||||||||||||||||||||| ||||    
T  32525881 cccccctattttaaaacttggaattttaccccctctatttt 32525841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 39317612 - 39317652
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctctttttt 64  Q
    ||||| |||||||||||||||||||||||||||||| ||||    
T  39317612 cccccctattttaaaacttggaattttaccccctctatttt 39317652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 39317672 - 39317720
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||||||||||||||||||| ||||||||| ||||| |||||| |||||    
T  39317672 cccccttattttaaaacttgtaattttacctcctctgttttacattttt 39317720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 44425675 - 44425715
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctctttttt 64  Q
    |||||||||||||||||| ||||||||||||||||| ||||    
T  44425675 cccccttattttaaaactcggaattttaccccctctatttt 44425715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 1858985 - 1858938
Alignment:
Q  23 acccccttattttaaaacttggaattttaccccctcttttttacgttt 70  Q
    |||||| ||||||||||||| |||||||||||||||| ||||| ||||    
T  1858985 acccccctattttaaaactttgaattttaccccctctattttatgttt 1858938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 34788872 - 34788913
Alignment:
Q  23 acccccttattttaaaacttggaattttaccccctctttttt 64  Q
    |||||| |||||||||||| ||||||||||||||||| ||||    
T  34788872 acccccctattttaaaactcggaattttaccccctctatttt 34788913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 38816104 - 38816063
Alignment:
Q  23 acccccttattttaaaacttggaattttaccccctctttttt 64  Q
    |||||| |||||||||||| ||||||||||||||||| ||||    
T  38816104 acccccctattttaaaactcggaattttaccccctctatttt 38816063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 56
Target Start/End: Original strand, 19058071 - 19058103
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccc 56  Q
    |||||||||||||||||| ||||||||||||||    
T  19058071 cccccttattttaaaactcggaattttaccccc 19058103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 6810607 - 6810655
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  6810607 cccccttattttaaaactcggaattttacccccttttttttacgttttt 6810655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 26617481 - 26617433
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  26617481 cccccttattttaaaactcggaattttaccccctctattttacgttttt 26617433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 37596978 - 37596930
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  37596978 cccccttattttaaaactcggaattttaccccctctattttacgttttt 37596930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 5564797 - 5564749
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||||||||||||||||| ||||||||||||||||| ||||| ||||||    
T  5564797 cccccttattttaaaactcggaattttaccccctctattttatgttttt 5564749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 37596785 - 37596829
Alignment:
Q  28 cttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||    
T  37596785 cttattttaaaactcggaattttaccccctctattttacgttttt 37596829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 37597037 - 37596997
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctctttttt 64  Q
    ||||| |||||||||||||||||||||||||||||| ||||    
T  37597037 cccccctattttaaaacttggaattttaccccctctatttt 37596997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 37596722 - 37596761
Alignment:
Q  25 ccccttattttaaaacttggaattttaccccctctttttt 64  Q
    |||| |||||||||||||||||||||||||||||| ||||    
T  37596722 ccccctattttaaaacttggaattttaccccctctatttt 37596761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 55
Target Start/End: Original strand, 52214022 - 52214053
Alignment:
Q  24 cccccttattttaaaacttggaattttacccc 55  Q
    ||||||||||||||||||||||||||||||||    
T  52214022 cccccttattttaaaacttggaattttacccc 52214053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 64
Target Start/End: Original strand, 52213968 - 52214002
Alignment:
Q  30 tattttaaaacttggaattttaccccctctttttt 64  Q
    |||||||||||||||||||||||||||||| ||||    
T  52213968 tattttaaaacttggaattttaccccctctatttt 52214002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 52214517 - 52214475
Alignment:
Q  30 tattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||||||||||| ||||||||||||||||| ||||| ||||||    
T  52214517 tattttaaaactcggaattttaccccctctattttatgttttt 52214475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 5564857 - 5564817
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctctttttt 64  Q
    ||||| |||||||||||| ||||||||||||||||| ||||    
T  5564857 cccccctattttaaaactcggaattttaccccctctatttt 5564817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 6505290 - 6505250
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctctttttt 64  Q
    ||||| |||||||||||| ||||||||||||||||| ||||    
T  6505290 cccccctattttaaaactcggaattttaccccctctatttt 6505250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 56
Target Start/End: Original strand, 14922097 - 14922125
Alignment:
Q  28 cttattttaaaacttggaattttaccccc 56  Q
    |||||||||||||||||||||||||||||    
T  14922097 cttattttaaaacttggaattttaccccc 14922125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 52214583 - 52214543
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctctttttt 64  Q
    ||||| |||||||||||| ||||||||||||||||| ||||    
T  52214583 cccccctattttaaaactcggaattttaccccctctatttt 52214543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 6180675 - 6180719
Alignment:
Q  28 cttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||    
T  6180675 cttattttaaaactcggaattttaccccctctattttacgttttt 6180719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 17335241 - 17335289
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    ||||||||||||||||||  |||||||||||||||| ||||||||||||    
T  17335241 cccccttattttaaaactcagaattttaccccctctattttacgttttt 17335289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 72
Target Start/End: Original strand, 15273293 - 15273335
Alignment:
Q  30 tattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||||||||||| ||||||||||||||||| ||||||||||||    
T  15273293 tattttaaaactcggaattttaccccctctattttacgttttt 15273335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 72
Target Start/End: Original strand, 29361719 - 29361761
Alignment:
Q  30 tattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||||||||||||||||||||||||||||| ||||| ||||||    
T  29361719 tattttaaaacttggaattttaccccctctattttatgttttt 29361761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 31066375 - 31066333
Alignment:
Q  28 cttattttaaaacttggaattttaccccctcttttttacgttt 70  Q
    |||||||||||||| ||||||||||||||||| ||||||||||    
T  31066375 cttattttaaaactcggaattttaccccctctattttacgttt 31066333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 17192410 - 17192362
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    ||||||||||||||||||  |||||||||||||||| ||| ||||||||    
T  17192410 cccccttattttaaaactcagaattttaccccctctatttaacgttttt 17192362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 29362188 - 29362140
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||| ||||||||||| | ||||||||||||||||| ||||||||||||    
T  29362188 ccccgttattttaaaattcggaattttaccccctctattttacgttttt 29362140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 24813903 - 24813946
Alignment:
Q  29 ttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    ||||||||||||| |||||| |||||||||| ||||||||||||    
T  24813903 ttattttaaaactcggaattctaccccctctattttacgttttt 24813946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 29362249 - 29362208
Alignment:
Q  23 acccccttattttaaaacttggaattttaccccctctttttt 64  Q
    |||||| |||||||||||| ||||||||||||||||| ||||    
T  29362249 acccccctattttaaaactcggaattttaccccctctatttt 29362208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 72
Target Start/End: Complemental strand, 32754873 - 32754832
Alignment:
Q  31 attttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||    
T  32754873 attttaaaactcggaattttaccccatctgttttacgttttt 32754832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 6180611 - 6180651
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctctttttt 64  Q
    ||||| |||||||||||| ||||||||||||||||| ||||    
T  6180611 cccccatattttaaaactcggaattttaccccctctatttt 6180651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 38739341 - 38739389
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||| ||||||||||||| ||||||||||||||||| ||||||||||||    
T  38739341 cccctttattttaaaactcggaattttaccccctctattttacgttttt 38739389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 34268320 - 34268279
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctctttttta 65  Q
    |||||||||||||||||| ||||||||||||||||| |||||    
T  34268320 cccccttattttaaaactcggaattttaccccctctatttta 34268279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 45753326 - 45753278
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||| ||||||||||||| ||||||||||||| ||| ||||||||||||    
T  45753326 cccctttattttaaaactcggaattttaccccatctattttacgttttt 45753278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 50772874 - 50772918
Alignment:
Q  28 cttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||||||||||||| ||||||||||||||||| ||||| ||||||    
T  50772874 cttattttaaaactcggaattttaccccctctgttttatgttttt 50772918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 41551224 - 41551181
Alignment:
Q  29 ttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    ||||||||||||| | ||||||||||||||| ||||||||||||    
T  41551224 ttattttaaaactcgaaattttaccccctctattttacgttttt 41551181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 72
Target Start/End: Original strand, 34267855 - 34267897
Alignment:
Q  30 tattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||||||||||| ||||||||||||||||| ||||| ||||||    
T  34267855 tattttaaaactcggaattttaccccctctattttatgttttt 34267897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 34267788 - 34267829
Alignment:
Q  23 acccccttattttaaaacttggaattttaccccctctttttt 64  Q
    |||||| |||||||||||| ||||||||||||||||| ||||    
T  34267788 acccccctattttaaaactcggaattttaccccctctatttt 34267829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 45752828 - 45752869
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctctttttta 65  Q
    ||||| |||||||||||| ||||||||||||||||| |||||    
T  45752828 cccccctattttaaaactcggaattttaccccctctatttta 45752869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 34268380 - 34268340
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctctttttt 64  Q
    ||||| |||||||||||| ||||||||||||||||| ||||    
T  34268380 cccccctattttaaaactcggaattttaccccctctatttt 34268340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 50772810 - 50772850
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctctttttt 64  Q
    ||||| |||||||||||| ||||||||||||||||| ||||    
T  50772810 cccccctattttaaaactcggaattttaccccctctatttt 50772850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 33222612 - 33222564
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||||||||||||||||| |||| |||||||||||| ||||||||||||    
T  33222612 cccccttattttaaaactcggaaatttaccccctctattttacgttttt 33222564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 34020277 - 34020229
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||||| ||||||||||| ||||||||||||||||| ||||||||||||    
T  34020277 ccccctaattttaaaactcggaattttaccccctctgttttacgttttt 34020229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 38929539 - 38929491
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||||||||||||||||| ||||||||||| ||||| ||||||||||||    
T  38929539 cccccttattttaaaactcggaattttaccgcctctattttacgttttt 38929491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 38852625 - 38852673
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||| ||||||||||||| | ||||||||||||||| ||||||||||||    
T  38852625 cccctttattttaaaactcgaaattttaccccctctattttacgttttt 38852673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 38852564 - 38852605
Alignment:
Q  23 acccccttattttaaaacttggaattttaccccctctttttt 64  Q
    |||||| |||||||||||| ||||||||||||||||| ||||    
T  38852564 acccccctattttaaaactcggaattttaccccctctatttt 38852605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 13935286 - 13935330
Alignment:
Q  28 cttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    |||||||||||||| ||||||||||||||| |  |||||||||||    
T  13935286 cttattttaaaactcggaattttaccccctttaatttacgttttt 13935330  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 56
Target Start/End: Original strand, 23615816 - 23615848
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccc 56  Q
    ||||| |||||||||||||||||||||||||||    
T  23615816 cccccctattttaaaacttggaattttaccccc 23615848  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 50681307 - 50681354
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    ||||||||||| |||||| ||||||||||||||| | ||||||||||||    
T  50681307 cccccttattt-aaaactcggaattttaccccctatattttacgttttt 50681354  T

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Target: scaffold0045 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 75347 - 75392
Alignment:
Q  27 ccttattttaaaacttggaattttaccccctcttttttacgttttt 72  Q
    ||||||||||||||| |||||||||||| |||| ||||||||||||    
T  75347 ccttattttaaaactcggaattttaccctctctattttacgttttt 75392  T

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Target: scaffold0508 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 55
Target Start/End: Complemental strand, 392 - 360
Alignment:
Q  23 acccccttattttaaaacttggaattttacccc 55  Q
    ||||||||||||||||||| |||||||||||||    
T  392 acccccttattttaaaactcggaattttacccc 360  T

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Target: scaffold0341 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 6968 - 6928
Alignment:
Q  24 cccccttattttaaaacttggaattttaccccctctttttt 64  Q
    ||||| |||||||||||| ||||||||||||||||| ||||    
T  6968 cccccctattttaaaactcggaattttaccccctctatttt 6928  T

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