View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18042_low_8 (Length: 454)
Name: NF18042_low_8
Description: NF18042
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18042_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 18 - 429
Target Start/End: Original strand, 250948 - 251357
Alignment:
| Q |
18 |
caaccttggcaaagaaaactttgctaacaaagataaggtttattggtcaagctatgacttatatatgataagttttagtttgaaactaatgcaatgcttt |
117 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
250948 |
caacgttggcaaagaaaactttgctaacaaagataaggtttattggtcaagctatgacttatatatgataagttttagtttgaaactaatgcaatgcttt |
251047 |
T |
|
| Q |
118 |
gttgtcgttgaatgactataacctcattggataatagggggtttgagggctaaactggttttagctcagagataaataaatagttggatgtcctaggttt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
251048 |
gttgtcgttgaatgactataacctcattggataatagggggtttgatggctaaactggttttagctcagagataaataaatagttggatgtcctaggttt |
251147 |
T |
|
| Q |
218 |
aaaccaggaccgaccaatgagaaaaaactaatataacaactaaccactaacatttttcattnnnnnnnnnncacttcattggatatgttcaacaatgtct |
317 |
Q |
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||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
251148 |
aaaccaggacctaccaatgagagaaaactaatataacaactaaccactaacatttttcattaaaaaaaaa--acttcattggatatgttcaacaatgtct |
251245 |
T |
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| Q |
318 |
gcatgtttctgcaactttataacacaaaaccaagagaattaatagttaccccaatggtgggaatgaggaaacaaaatgtgttgagttttactccaataat |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
251246 |
gcatgtttctgcaactttataacacaaaaccaagagaattaatagttaccccaatggtgggaatgaggaaacaaaatgtgttgagttttactcgaataat |
251345 |
T |
|
| Q |
418 |
tacaaataacaa |
429 |
Q |
| |
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|||||||||||| |
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| T |
251346 |
tacaaataacaa |
251357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 278
Target Start/End: Original strand, 17608156 - 17608201
Alignment:
| Q |
233 |
aatgagaaaaaactaatataacaactaaccactaacatttttcatt |
278 |
Q |
| |
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|||||||||||||||| || |||| |||| |||||||||||||||| |
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| T |
17608156 |
aatgagaaaaaactaagatgacaattaactactaacatttttcatt |
17608201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 272
Target Start/End: Original strand, 26281990 - 26282026
Alignment:
| Q |
236 |
gagaaaaaactaatataacaactaaccactaacattt |
272 |
Q |
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||||||||| |||| |||||||||||||||||||||| |
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| T |
26281990 |
gagaaaaaattaatctaacaactaaccactaacattt |
26282026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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