View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18043_high_1 (Length: 518)
Name: NF18043_high_1
Description: NF18043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18043_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 45 - 502
Target Start/End: Original strand, 41989690 - 41990136
Alignment:
| Q |
45 |
tgtggctcaaatgccactagtagtaataaccaatgttcttaaattatgaccgaatcaaccgggttaaccatttgaactagaaaccggtcagtttatcggt |
144 |
Q |
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| T |
41989690 |
tgtggctcaaaggccactagtagtaataaccaatgttcttaaattatgaccgaatcaaccgggttaaccatttgaactagaaaccggtcagtttatcggt |
41989789 |
T |
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| Q |
145 |
tgattcaatcttgtttgaagcttaatctaattgaattgaggttgcttttatatatattttttattagtcatttggttc--------ttgaacccgcttgg |
236 |
Q |
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| T |
41989790 |
tgattcgatcttgtttgaagcttaatctaattgaattgaggttgcttatatatat---ttttattaatcatttggttcaatcgcagttgaacccgtttgg |
41989886 |
T |
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| Q |
237 |
ttgaattatgatttgaagatctcgtcggttcagtatttaatccaatttttagaacatcacatacaacattaaaatgacagaagtgcaatctatacactct |
336 |
Q |
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| T |
41989887 |
ttgaattatgatttgaagatctcgtcgattcagtattta------------gaacatcacatacaacattaaaatgacagaattgcaaactatacactct |
41989974 |
T |
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| Q |
337 |
ttcgctctcttttttaaatacttatgactatgttattgctcattagttgaaatttatactgttgtcacaatttaaaaaatggatagtgtataaatcaatg |
436 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41989975 |
ttcactctcttttttaaatacttatgactatgttattgctcattagttgaaatttatactgttgtcacaatttaaaaaatggatagtgtataaatcaatg |
41990074 |
T |
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| Q |
437 |
gaactaaaatagaatttagctagctactactaactaatagaatgaatagtttatatggttgattat |
502 |
Q |
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| T |
41990075 |
gaactaaaatagaatt----tagctactactaactaatagaatgaatagtttatatggttgattat |
41990136 |
T |
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