View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18043_high_10 (Length: 298)
Name: NF18043_high_10
Description: NF18043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18043_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 54 - 280
Target Start/End: Complemental strand, 13653733 - 13653505
Alignment:
| Q |
54 |
aatacaaaagagacaagac-agtgatcaaattattttatgaggatacagtctttgtccctcgatgtttttgaagtaagtatttcaaatacatacttcttt |
152 |
Q |
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| T |
13653733 |
aatacaaaagagacaagaagagtgatcaaattattttatgaggatacagtctttgtccctcgatgtttttgaagtatgtatttcaaatacatacttcttt |
13653634 |
T |
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| Q |
153 |
ttgtgatgttgataaacataaaaatatgagaagtttctagtaggagaattgtaggggacaccccata-tttatgggctagtagaccttatatagtgaatc |
251 |
Q |
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| T |
13653633 |
ttgtgatgttgatagacataaaaatatgagaagtttttagtaggagaattgtaggggacaccccatattttatgggctagtagaccttatatactgaatc |
13653534 |
T |
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| Q |
252 |
aaatcttggaggttgttgtaggaggaacc |
280 |
Q |
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| T |
13653533 |
aaatcttggaggttgttgtaggaggaacc |
13653505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 136 - 280
Target Start/End: Complemental strand, 13659127 - 13658978
Alignment:
| Q |
136 |
caaatacatacttctttttgtgatgttgataaaca----taaaaatatgagaagtttctagtaggagaattgtaggggacaccccatat-ttatgggcta |
230 |
Q |
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| T |
13659127 |
caaatacatacttatttttatgatcttcatacacacttataaaaatatgagaagtttttagtaggagaattaaagggaaaaattcacatcttatgggcta |
13659028 |
T |
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| Q |
231 |
gtagaccttatatagtgaatcaaatcttggaggttgttgtaggaggaacc |
280 |
Q |
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| T |
13659027 |
gtagaccttatatattgaattaaatcttggaagttgttgtaggaggaacc |
13658978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 220 - 280
Target Start/End: Complemental strand, 13648510 - 13648450
Alignment:
| Q |
220 |
tttatgggctagtagaccttatatagtgaatcaaatcttggaggttgttgtaggaggaacc |
280 |
Q |
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| T |
13648510 |
tttacgggctagtagaccttatatattgaattaaatcttggaagttgttgtaggaggaacc |
13648450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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