View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18043_high_7 (Length: 326)

Name: NF18043_high_7
Description: NF18043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18043_high_7
NF18043_high_7
[»] chr1 (3 HSPs)
chr1 (9-309)||(18116236-18116534)
chr1 (9-309)||(18132277-18132575)
chr1 (46-264)||(18123922-18124140)
[»] chr4 (1 HSPs)
chr4 (70-237)||(52492002-52492167)
[»] chr7 (8 HSPs)
chr7 (123-258)||(35945081-35945216)
chr7 (60-116)||(36224582-36224638)
chr7 (68-262)||(36219250-36219444)
chr7 (186-258)||(35950860-35950932)
chr7 (68-259)||(35956233-35956424)
chr7 (174-213)||(32726017-32726056)
chr7 (180-259)||(35975800-35975879)
chr7 (180-259)||(35997212-35997291)
[»] chr2 (1 HSPs)
chr2 (61-136)||(26330410-26330485)


Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 9 - 309
Target Start/End: Original strand, 18116236 - 18116534
Alignment:
Q  9 gaagaatatatttaccttaaagaatgtcaatagcttcattccccctctcctcttggttctccaatgaaaacatgtttgatgtgggaaatcatgggccagt 108  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  18116236 gaagaatatatttacattaaagaatgtcaataacttcattccccctctcctcttggttctccaatgaaaacatgtttgatgtgagaaatcatgggccagt 18116335  T
Q  109 actcaccaaactgtggccgatattttcgatagagttcaggacaatcatatatgcgtaaatcatcgagggtagtgagacgatgcatgccacttggaagact 208  Q
    ||||||||||| || ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  18116336 actcaccaaaccgtcgccgatattttcgatagagttcaggacaaccatatatgcgcaaatcatcgagggtagtgagacgatgcatgccacatggaagact 18116435  T
Q  209 caacacttgagggcagtcaataatatagagccttttaagatgagacattgttgttatagacactctgaaaatatcttgagattcggaaaattattaattt 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||| ||||||||||||||||||||| ||||||    
T  18116436 caacacttgagggcagtcaataatatagagccttttaagatgagacattgttgt--tagacactctaaaaacatcttgagattcggaaaattagtaattt 18116533  T

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Target: chr1; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 9 - 309
Target Start/End: Original strand, 18132277 - 18132575
Alignment:
Q  9 gaagaatatatttaccttaaagaatgtcaatagcttcattccccctctcctcttggttctccaatgaaaacatgtttgatgtgggaaatcatgggccagt 108  Q
    |||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||      
T  18132277 gaagaatatatttaccttcaagaatgtcgataacttcattccccctctcctcttggttctccaatgaaaacatgtttaatgtgggaaatcatgggccaag 18132376  T
Q  109 actcaccaaactgtggccgatattttcgatagagttcaggacaatcatatatgcgtaaatcatcgagggtagtgagacgatgcatgccacttggaagact 208  Q
    |||||||||| |||||||||||||||||||| |||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  18132377 actcaccaaattgtggccgatattttcgatatagttcaggacaaccatatatgcgcaaatcattgagggtagtgagacgatgcatgccacttggaagact 18132476  T
Q  209 caacacttgagggcagtcaataatatagagccttttaagatgagacattgttgttatagacactctgaaaatatcttgagattcggaaaattattaattt 308  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||  || ||| |||||||| ||||  |||||| |||||||||||||||    
T  18132477 caacacttgagggcagtcaataatatagagcctcttaagatgagacattgttgt--taaacattctgaaaacatctcaagattcagaaaattattaattt 18132574  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 46 - 264
Target Start/End: Original strand, 18123922 - 18124140
Alignment:
Q  46 attccccctctcctcttggttctccaatgaaaacatgtttgatgtgggaaatcatgggccagtactcaccaaactgtggccgatattttcgatagagttc 145  Q
    ||||| ||| |||||||||||||  |||||||||||| |||||||| | |||||| ||||||||||||||    |||||| || |||||| | | | |||    
T  18123922 attcctcctatcctcttggttcttgaatgaaaacatgcttgatgtgtgcaatcataggccagtactcaccggcttgtggctgacattttctacacaattc 18124021  T
Q  146 aggacaatcatatatgcgtaaatcatcgagggtagtgagacgatgcatgccacttggaagactcaacacttgagggcagtcaataatatagagcctttta 245  Q
    ||||||  | | ||||   || |  |||| ||||||||| ||| ||||| ||||||||||| ||||||  | ||| || | |  ||||| ||||||||||    
T  18124022 aggacagccttctatgtacaatttttcgatggtagtgagtcgaagcatgtcacttggaagattcaacagattaggacaattaccaatatggagcctttta 18124121  T
Q  246 agatgagacattgttgtta 264  Q
    |||||||||||||||||||    
T  18124122 agatgagacattgttgtta 18124140  T

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Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 70 - 237
Target Start/End: Original strand, 52492002 - 52492167
Alignment:
Q  70 caatgaaaacatgtttgatgtgggaaatcatgggccagtactcaccaaactgtggccgatattttcgatagagttcaggacaatcatatatgcgtaaatc 169  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||| ||   ||||||||  | ||    
T  52492002 caatgaaaacatgtttgatgtgggaaatcatgggccagtagtcaccaaattgtggccgatattttcgatacagttcaggataa--ctatatgcgcgagtc 52492099  T
Q  170 atcgagggtagtgagacgatgcatgccacttggaagactcaacacttgagggcagtcaataatataga 237  Q
    || ||||| |  ||||  ||||||  |||||||||||||||| | | || | || |||||||||||||    
T  52492100 attgagggaaaggagaaaatgcatatcacttggaagactcaaaattggaagacaatcaataatataga 52492167  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 258
Target Start/End: Original strand, 35945081 - 35945216
Alignment:
Q  123 ggccgatattttcgatagagttcaggacaatcatatatgcgtaaatcatcgagggtagtgagacgatgcatgccacttggaagactcaacacttgagggc 222  Q
    ||||||||||||| | | |  ||||||||||||  |||||| ||||| || ||||  ||||| ||||||||| |||||||||||||||||| | |||| |    
T  35945081 ggccgatattttctacacaactcaggacaatcacctatgcgcaaatcttcaagggcggtgaggcgatgcatgtcacttggaagactcaacagtcgaggac 35945180  T
Q  223 agtcaataatatagagccttttaagatgagacattg 258  Q
    |||||||||| |||||| | |||||| ||| |||||    
T  35945181 agtcaataatgtagagcttcttaagacgagtcattg 35945216  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 36224638 - 36224582
Alignment:
Q  60 cttggttctccaatgaaaacatgtttgatgtgggaaatcatgggccagtactcacca 116  Q
    |||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||    
T  36224638 cttggttctccaatgaaaacacttttgatgtgggcaatcatgggccagtactcacca 36224582  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 262
Target Start/End: Complemental strand, 36219444 - 36219250
Alignment:
Q  68 tccaatgaaaacatgtttgatgtgggaaatcatgggccagtactcaccaaactgtggccgatattttcgatagagttcaggacaatcatatatgcgtaaa 167  Q
    |||||| ||||||  ||||||||| |||||||||||||||||||||||  | ||||||  | |||||||  | |  ||||||||||| | ||||   |||    
T  36219444 tccaataaaaacacttttgatgtgagaaatcatgggccagtactcacctgattgtggcttaaattttcggcacaactcaggacaatcttctatgaccaaa 36219345  T
Q  168 tcatcgagggtagtgagacgatgcatgccacttggaagactcaacacttgagggcagtcaataatatagagccttttaagatgagacattgttgt 262  Q
    || || ||||  |||||  ||| |||| ||||||||||||| |  | |||||| ||  ||| |||||  |||||||||||||||| || ||||||    
T  36219344 tcttcaagggcggtgaggtgatacatgtcacttggaagactaattagttgaggacaaccaacaatatgtagccttttaagatgagtcaatgttgt 36219250  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 258
Target Start/End: Original strand, 35950860 - 35950932
Alignment:
Q  186 cgatgcatgccacttggaagactcaacacttgagggcagtcaataatatagagccttttaagatgagacattg 258  Q
    ||||||||  ||||||||| |||||||| |||||| ||||||||||| |||||| | |||||| ||| |||||    
T  35950860 cgatgcatttcacttggaaaactcaacagttgaggacagtcaataatgtagagcttcttaagacgagtcattg 35950932  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 259
Target Start/End: Original strand, 35956233 - 35956424
Alignment:
Q  68 tccaatgaaaacatgtttgatgtgggaaatcatgggccagtactcaccaaactgtggccgatattttc-gatagagttcaggacaatcatatatgcgtaa 166  Q
    |||||| ||||||  ||||||||| |||||||||||||||||||||||| | || | |||  |||||| | |  | || ||||||| || ||||| | ||    
T  35956233 tccaataaaaacacttttgatgtgagaaatcatgggccagtactcaccagattgggcccggaattttctgctcaactt-aggacaaccaaatatgtgcaa 35956331  T
Q  167 atcatcgagggtagtgagacgatgcatgccacttggaagactcaacacttgagggcagtcaataatatagagccttttaagatgagacattgt 259  Q
    |   || ||||  ||||| |||||||||  ||||||||||||||||| |||||| |||| ||  ||  |||||||||||||| ||| ||||||    
T  35956332 acgttcaagggcggtgaggcgatgcatgttacttggaagactcaacagttgaggacagttaactatgaagagccttttaagacgagtcattgt 35956424  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 213
Target Start/End: Original strand, 32726017 - 32726056
Alignment:
Q  174 agggtagtgagacgatgcatgccacttggaagactcaaca 213  Q
    ||||||||||| ||||||||| ||||||||||||||||||    
T  32726017 agggtagtgaggcgatgcatgtcacttggaagactcaaca 32726056  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 259
Target Start/End: Original strand, 35975800 - 35975879
Alignment:
Q  180 gtgagacgatgcatgccacttggaagactcaacacttgagggcagtcaataatatagagccttttaagatgagacattgt 259  Q
    ||||| ||||||||  |||||||||||||||||| |||||| |||||||| || |||||  | |||||| ||| ||||||    
T  35975800 gtgaggcgatgcatatcacttggaagactcaacagttgaggacagtcaattatgtagagtttcttaagacgagtcattgt 35975879  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 259
Target Start/End: Original strand, 35997212 - 35997291
Alignment:
Q  180 gtgagacgatgcatgccacttggaagactcaacacttgagggcagtcaataatatagagccttttaagatgagacattgt 259  Q
    ||||| ||||||||  |||||||||||||||||| |||||| |||||||| || |||||  | |||||| ||| ||||||    
T  35997212 gtgaggcgatgcatatcacttggaagactcaacagttgaggacagtcaattatgtagagtttcttaagacgagtcattgt 35997291  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 136
Target Start/End: Complemental strand, 26330485 - 26330410
Alignment:
Q  61 ttggttctccaatgaaaacatgtttgatgtgggaaatcatgggccagtactcaccaaactgtggccgatattttcg 136  Q
    |||| |||||||||||||| |||||||  || |||| ||||||||||||||||||||| || ||| || |||||||    
T  26330485 ttggatctccaatgaaaacgtgtttgacatgagaaagcatgggccagtactcaccaaattgaggctgacattttcg 26330410  T

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