View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18043_low_3 (Length: 467)

Name: NF18043_low_3
Description: NF18043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18043_low_3
NF18043_low_3
[»] chr7 (13 HSPs)
chr7 (83-411)||(48006317-48006651)
chr7 (331-467)||(35207206-35207340)
chr7 (385-467)||(48006206-48006286)
chr7 (334-467)||(19318178-19318309)
chr7 (390-467)||(2834288-2834363)
chr7 (385-467)||(26903567-26903647)
chr7 (385-467)||(29474552-29474632)
chr7 (389-467)||(35363457-35363533)
chr7 (381-443)||(3740721-3740783)
chr7 (385-467)||(6408336-6408416)
chr7 (353-414)||(6408444-6408505)
chr7 (333-411)||(2834392-2834470)
chr7 (386-414)||(26903511-26903539)
[»] chr2 (10 HSPs)
chr2 (331-467)||(17200106-17200240)
chr2 (332-467)||(22563349-22563482)
chr2 (331-467)||(21265591-21265724)
chr2 (332-467)||(34645685-34645818)
chr2 (385-467)||(12232644-12232724)
chr2 (331-462)||(20296560-20296689)
chr2 (385-467)||(29892938-29893018)
chr2 (331-414)||(22563238-22563321)
chr2 (385-467)||(13979771-13979851)
chr2 (331-414)||(21265752-21265835)
[»] chr6 (6 HSPs)
chr6 (328-467)||(22748613-22748750)
chr6 (392-467)||(16125661-16125734)
chr6 (381-467)||(11014460-11014544)
chr6 (353-443)||(33277356-33277446)
chr6 (387-434)||(6705297-6705344)
chr6 (353-414)||(16125572-16125633)
[»] chr5 (11 HSPs)
chr5 (332-467)||(17370096-17370229)
chr5 (331-467)||(31194104-31194238)
chr5 (385-467)||(39634942-39635022)
chr5 (333-467)||(42546488-42546620)
chr5 (385-467)||(304093-304173)
chr5 (389-467)||(14076754-14076830)
chr5 (336-414)||(14076859-14076937)
chr5 (385-467)||(32347036-32347116)
chr5 (385-443)||(8754740-8754797)
chr5 (339-414)||(42546385-42546460)
chr5 (385-414)||(39634885-39634914)
[»] chr8 (15 HSPs)
chr8 (331-464)||(6911057-6911188)
chr8 (331-467)||(16324872-16325006)
chr8 (385-467)||(41721909-41721989)
chr8 (385-467)||(41403841-41403921)
chr8 (335-467)||(8489405-8489535)
chr8 (385-467)||(43801553-43801633)
chr8 (332-414)||(6911219-6911301)
chr8 (335-467)||(22781087-22781216)
chr8 (381-414)||(22781243-22781276)
chr8 (355-467)||(14999310-14999420)
chr8 (331-412)||(43801663-43801744)
chr8 (389-419)||(24829904-24829934)
chr8 (385-414)||(16325034-16325063)
chr8 (385-414)||(40621717-40621746)
chr8 (381-414)||(41403949-41403982)
[»] chr3 (16 HSPs)
chr3 (331-467)||(43797380-43797514)
chr3 (331-467)||(8799345-8799478)
chr3 (381-443)||(29828755-29828817)
chr3 (385-467)||(48346117-48346197)
chr3 (328-414)||(46883602-46883688)
chr3 (385-467)||(4041265-4041345)
chr3 (328-414)||(8799506-8799592)
chr3 (385-436)||(46883497-46883548)
chr3 (335-414)||(4041373-4041452)
chr3 (385-467)||(38499957-38500041)
chr3 (335-414)||(53197020-53197099)
chr3 (394-467)||(53197127-53197195)
chr3 (331-414)||(29828871-29828954)
chr3 (385-420)||(20383219-20383254)
chr3 (385-467)||(43797782-43797861)
chr3 (414-467)||(20383143-20383194)
[»] chr1 (19 HSPs)
chr1 (385-467)||(27171938-27172018)
chr1 (385-467)||(33156537-33156617)
chr1 (332-467)||(34970014-34970147)
chr1 (385-467)||(42082955-42083035)
chr1 (385-467)||(3385393-3385473)
chr1 (385-467)||(5771990-5772070)
chr1 (328-467)||(13947061-13947198)
chr1 (385-467)||(49776957-49777042)
chr1 (385-467)||(24883052-24883131)
chr1 (389-467)||(33400943-33401019)
chr1 (385-463)||(38338749-38338825)
chr1 (385-467)||(39781203-39781282)
chr1 (389-467)||(37948927-37949003)
chr1 (331-416)||(24883156-24883241)
chr1 (341-414)||(43297041-43297114)
chr1 (385-414)||(13947004-13947033)
chr1 (385-414)||(33156645-33156674)
chr1 (385-414)||(37948870-37948899)
chr1 (385-414)||(42082895-42082924)
[»] chr4 (16 HSPs)
chr4 (331-467)||(11790001-11790135)
chr4 (335-467)||(19037861-19037989)
chr4 (385-467)||(1025045-1025125)
chr4 (381-467)||(32591287-32591371)
chr4 (336-443)||(7062005-7062112)
chr4 (331-443)||(50544284-50544396)
chr4 (387-467)||(9551363-9551442)
chr4 (385-467)||(46993149-46993231)
chr4 (385-467)||(26297395-26297475)
chr4 (335-467)||(3556398-3556526)
chr4 (402-467)||(5465992-5466055)
chr4 (328-414)||(19037747-19037833)
chr4 (335-414)||(11789891-11789970)
chr4 (385-414)||(5465935-5465964)
chr4 (385-414)||(9551306-9551335)
chr4 (390-419)||(17914800-17914829)


Alignment Details
Target: chr7 (Bit Score: 167; Significance: 3e-89; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 83 - 411
Target Start/End: Complemental strand, 48006651 - 48006317
Alignment:
Q  83 tttttaaatgacgccagcatannnnnnnnaataacaaagaaattacgataaaaaagggtaacaagtacaccaagtactatccttcnnnnnnnnn--tagc 180  Q
    |||||||||||| ||||||||        ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||           ||||    
T  48006651 tttttaaatgacaccagcatattttttttaataacaaagaaattacgataaaaaagggtaacaagtacactaagtactatccttcaaaaaaaaaaatagc 48006552  T
Q  181 ccaagaactaacta----catcctctaccnnnnnnnnnnnncactaattaactatatcatatcttcccataattttagctcacgttctttgttgtttatg 276  Q
    ||||||||||||||    |||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48006551 ccaagaactaactaactacatcctctaccaaaaaagaaaaacactaattaactatatcatatcttcccataattttagctcacgttctttgttgtttatg 48006452  T
Q  277 ataagggagactctccagttttacaagatagcctgtttttaatgagttcaatatgctccatttactccctttagaatttggatgcaaaacatgtggcnnn 376  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||  ||||| ||||||||||||||||||||||       
T  48006451 ataagggagactctccagttttacaagatagcctctttttaatgagttcggtatgctccatttactctatttaggatttggatgcaaaacatgtggcaaa 48006352  T
Q  377 nnnntatttaacggttgagattttaaattaaaaaa 411  Q
        |||||||||||||||||||||||||||||||    
T  48006351 aaaatatttaacggttgagattttaaattaaaaaa 48006317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 331 - 467
Target Start/End: Original strand, 35207206 - 35207340
Alignment:
Q  331 gctccatttactccctttagaatttggatgcaaaacatgtggcnnnnnnntatttaacggttgagattttaaattaaaaaacaataaaatgttgttgtga 430  Q
    |||||||||||||| |||||  ||||||||||| |||||||||       ||| ||||||||||||||||||||||||||||||||||| ||||||| ||    
T  35207206 gctccatttactccatttagggtttggatgcaagacatgtggcaaaaaaatatctaacggttgagattttaaattaaaaaacaataaaaggttgttgcga 35207305  T
Q  431 tatgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
    ||||||| |||  |||| ||||||||| |||||||||    
T  35207306 tatgagagaag--aagggaacatgattagtttgttat 35207340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 385 - 467
Target Start/End: Original strand, 48006206 - 48006286
Alignment:
Q  385 taacggttgagattttaaattaaaaaacaataaaatgttgttgtgatatgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||  |||| |||||||||||||||||||    
T  48006206 taacggttgagattttaaattaaaaaacaataaaaagttgttgcgatatgagaaaag--aagggaacatgatttgtttgttat 48006286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 334 - 467
Target Start/End: Original strand, 19318178 - 19318309
Alignment:
Q  334 ccatttactccctttagaatttggatgcaaaacatgtggcnnnnnnntatttaacggttgagattttaaattaaaaaacaataaaatgttgttgtgatat 433  Q
    ||||||||||| |||||| |||||||| || ||||||| |       ||| ||||| ||||||||||||||||||||||||||||| ||||||| |||||    
T  19318178 ccatttactccatttagagtttggatgtaagacatgtgacaaaaaaatatctaacgattgagattttaaattaaaaaacaataaaaggttgttgcgatat 19318277  T
Q  434 gagaaaagaaaaggtaacatgatttgtttgttat 467  Q
    |||| ||||||  | |||||||||||||||||||    
T  19318278 gagagaagaaa--ggaacatgatttgtttgttat 19318309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 390 - 467
Target Start/End: Original strand, 2834288 - 2834363
Alignment:
Q  390 gttgagattttaaattaaaaaacaataaaatgttgttgtgatatgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| |||  |||| |||||||||||||||||||    
T  2834288 gttgagattttaaattaaaaaacaataaaaggttgttgtgatatgagagaag--aaggaaacatgatttgtttgttat 2834363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 385 - 467
Target Start/End: Complemental strand, 26903647 - 26903567
Alignment:
Q  385 taacggttgagattttaaattaaaaaacaataaaatgttgttgtgatatgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
    ||||||||||||||||||||||||||| ||||||| ||||||| ||||||||| ||||| ||  |||||||||||||||||||    
T  26903647 taacggttgagattttaaattaaaaaataataaaaagttgttgcgatatgagagaagaagag--aacatgatttgtttgttat 26903567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 385 - 467
Target Start/End: Complemental strand, 29474632 - 29474552
Alignment:
Q  385 taacggttgagattttaaattaaaaaacaataaaatgttgttgtgatatgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||| | |||  |||| |||||||||||||||||||    
T  29474632 taacggttgaaattttaaattaaaaaacaataaaaggttgttgtgatatgacagaag--aagggaacatgatttgtttgttat 29474552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 389 - 467
Target Start/End: Complemental strand, 35363533 - 35363457
Alignment:
Q  389 ggttgagattttaaattaaaaaacaataaaatgttgttgtgatatgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
    ||||||||||||||||||||||| |||| |||||||||| ||||||||| |  |||||| ||||| |||||||||||||    
T  35363533 ggttgagattttaaattaaaaaataatagaatgttgttgcgatatgagaga--aaaagggaacataatttgtttgttat 35363457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 381 - 443
Target Start/End: Original strand, 3740721 - 3740783
Alignment:
Q  381 tatttaacggttgagattttaaattaaaaaacaataaaatgttgttgtgatatgagaaaagaa 443  Q
    ||||||||| || |||||||||||||||||||||||||||||||||  ||||||||| |||||    
T  3740721 tatttaacgattcagattttaaattaaaaaacaataaaatgttgttaagatatgagagaagaa 3740783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 385 - 467
Target Start/End: Original strand, 6408336 - 6408416
Alignment:
Q  385 taacggttgagattttaaattaaaaaacaataaaatgttgttgtgatatgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
    ||||||||||||||||| ||||||||||||||||| |||| ||  |||||||| |||  |||| || ||||||||||||||||    
T  6408336 taacggttgagattttatattaaaaaacaataaaaggttgctgccatatgagagaag--aagggaatatgatttgtttgttat 6408416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 414
Target Start/End: Complemental strand, 6408505 - 6408444
Alignment:
Q  353 tttggatgcaaaacatgtggcnnnnnnntatttaacggttgagattttaaattaaaaaacaa 414  Q
    ||||||||||| |||||||||       ||| ||||||||||||||||||||||||||||||    
T  6408505 tttggatgcaagacatgtggcaaaaaaatatctaacggttgagattttaaattaaaaaacaa 6408444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 411
Target Start/End: Complemental strand, 2834470 - 2834392
Alignment:
Q  333 tccatttactccctttagaatttggatgcaaaacatgtggcnnnnnnntatttaacggttgagattttaaattaaaaaa 411  Q
    |||||||| ||| |||||  ||||||| |||||||||||||       ||| |||| ||||||||||||||||||||||    
T  2834470 tccatttattccatttagggtttggatacaaaacatgtggcaaaataatatgtaacagttgagattttaaattaaaaaa 2834392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 414
Target Start/End: Original strand, 26903511 - 26903539
Alignment:
Q  386 aacggttgagattttaaattaaaaaacaa 414  Q
    |||||||||||||||||||||||||||||    
T  26903511 aacggttgagattttaaattaaaaaacaa 26903539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 9e-31; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 331 - 467
Target Start/End: Original strand, 17200106 - 17200240
Alignment:
Q  331 gctccatttactccctttagaatttggatgcaaaacatgtggcnnnnnnntatttaacggttgagattttaaattaaaaaacaataaaatgttgttgtga 430  Q
    |||||||||||||| ||||| ||||||||| || |||||||||       ||| ||| ||||||||||||||||||||||||||||||| ||||||||||    
T  17200106 gctccatttactccatttaggatttggatgtaagacatgtggcaaataaatatctaatggttgagattttaaattaaaaaacaataaaaggttgttgtga 17200205  T
Q  431 tatgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
    ||||||| |||  |||| |||||||||||||||||||    
T  17200206 tatgagagaag--aagggaacatgatttgtttgttat 17200240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 332 - 467
Target Start/End: Complemental strand, 22563482 - 22563349
Alignment:
Q  332 ctccatttactccctttagaatttggatgcaaaacatgtggcnnnnnnntatttaacggttgagattttaaattaaaaaacaataaaatgttgttgtgat 431  Q
    ||||||||||||| ||||| |||||||||||| |||||||||       ||| ||||||||||||||||||||||||||||||||||| ||||||| |||    
T  22563482 ctccatttactccatttaggatttggatgcaagacatgtggcaaaaaaatatctaacggttgagattttaaattaaaaaacaataaaaggttgttgcgat 22563383  T
Q  432 atgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
     ||||| |||  |||| |||||||||||||||||||    
T  22563382 gtgagagaag--aagggaacatgatttgtttgttat 22563349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 331 - 467
Target Start/End: Original strand, 21265591 - 21265724
Alignment:
Q  331 gctccatttactccctttagaatttggatgcaaaacatgtggcnnnnnnntatttaacggttgagattttaaattaaaaaacaataaaatgttgttgtga 430  Q
    |||| ||||||||| |||||  ||||||||||| |||||||||       ||| ||||||||||||||||||||||||||||||||||| ||| ||| ||    
T  21265591 gctcaatttactccatttagggtttggatgcaagacatgtggcaaaaaa-tatctaacggttgagattttaaattaaaaaacaataaaacgttattgcga 21265689  T
Q  431 tatgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
    ||||||| ||||| ||  |||||||||||||||||||    
T  21265690 tatgagagaagaagag--aacatgatttgtttgttat 21265724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 332 - 467
Target Start/End: Complemental strand, 34645818 - 34645685
Alignment:
Q  332 ctccatttactccctttagaatttggatgcaaaacatgtggcnnnnnnntatttaacggttgagattttaaattaaaaaacaataaaatgttgttgtgat 431  Q
    ||||||||| ||| |||||  |||||||| || |||||||||       ||| ||||||||||||||||||||||||||||||||||| ||||||| |||    
T  34645818 ctccatttattccatttagggtttggatgtaagacatgtggcaagaaaatatctaacggttgagattttaaattaaaaaacaataaaaggttgttgcgat 34645719  T
Q  432 atgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
    |||||| |||  |||| ||||||| |||||||||||    
T  34645718 atgagagaag--aagggaacatgaattgtttgttat 34645685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 385 - 467
Target Start/End: Original strand, 12232644 - 12232724
Alignment:
Q  385 taacggttgagattttaaattaaaaaacaataaaatgttgttgtgatatgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
    ||||||||||||||||||||||||||||||||||| ||||||| || |||||| |||  |||| |||||||||||||||||||    
T  12232644 taacggttgagattttaaattaaaaaacaataaaaggttgttgcgacatgagagaag--aagggaacatgatttgtttgttat 12232724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 331 - 462
Target Start/End: Complemental strand, 20296689 - 20296560
Alignment:
Q  331 gctccatttactccctttagaatttggatgcaaaacatgtggcnnnnnnntatttaacggttgagattttaaattaaaaaacaataaaatgttgttgtga 430  Q
    |||||||||||||| ||||  | ||||||| || |||||||||       |||  |||||||||||||||||||||||||||||||||| |||||||| |    
T  20296689 gctccatttactccatttaagaattggatgtaagacatgtggcaaaaaaatatccaacggttgagattttaaattaaaaaacaataaaaggttgttgtca 20296590  T
Q  431 tatgagaaaagaaaaggtaacatgatttgttt 462  Q
    ||||||| |||  |||| ||||||||||||||    
T  20296589 tatgagagaag--aagggaacatgatttgttt 20296560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 385 - 467
Target Start/End: Complemental strand, 29893018 - 29892938
Alignment:
Q  385 taacggttgagattttaaattaaaaaacaataaaatgttgttgtgatatgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
    |||||||||||||||||||||||||||||||||||  |||||| ||||||||| |||  |||| |||||||||||||||||||    
T  29893018 taacggttgagattttaaattaaaaaacaataaaagattgttgcgatatgagagaag--aagggaacatgatttgtttgttat 29892938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 331 - 414
Target Start/End: Original strand, 22563238 - 22563321
Alignment:
Q  331 gctccatttactccctttagaatttggatgcaaaacatgtggcnnnnnnntatttaacggttgagattttaaattaaaaaacaa 414  Q
    |||||||||||||| |||||  ||||||||||| |||||||||       ||||||||||||||||||||||||||||||||||    
T  22563238 gctccatttactccatttagggtttggatgcaagacatgtggcaaaaaaatatttaacggttgagattttaaattaaaaaacaa 22563321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 385 - 467
Target Start/End: Complemental strand, 13979851 - 13979771
Alignment:
Q  385 taacggttgagattttaaattaaaaaacaataaaatgttgttgtgatatgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
    ||||| ||||||||||||||||||||||||| ||||||||||| |||| |||| ||||| ||  ||||| |||||||||||||    
T  13979851 taacgattgagattttaaattaaaaaacaatgaaatgttgttgcgataggagagaagaagag--aacataatttgtttgttat 13979771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 414
Target Start/End: Complemental strand, 21265835 - 21265752
Alignment:
Q  331 gctccatttactccctttagaatttggatgcaaaacatgtggcnnnnnnntatttaacggttgagattttaaattaaaaaacaa 414  Q
    |||||||||||||  |||||  ||||||||||| |||||||||       ||| ||| ||||||||||||||||||||||||||    
T  21265835 gctccatttactctatttagggtttggatgcaagacatgtggcaaaaaagtatctaatggttgagattttaaattaaaaaacaa 21265752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 8e-28; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 328 - 467
Target Start/End: Original strand, 22748613 - 22748750
Alignment:
Q  328 tatgctccatttactccctttagaatttggatgcaaaacatgtggcnnnnnnntatttaacggttgagattttaaattaaaaaacaataaaatgttgttg 427  Q
    ||||||||||||||||| ||||  |||||||||||| |||||||||       |||  |||||||||||||||||||||||||||||||||| |||||||    
T  22748613 tatgctccatttactccatttaagatttggatgcaagacatgtggcaaaaaaatatccaacggttgagattttaaattaaaaaacaataaaaggttgttg 22748712  T
Q  428 tgatatgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
      |||||||| |||  |||| |||||||||||||||||||    
T  22748713 ccatatgagagaag--aagggaacatgatttgtttgttat 22748750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 392 - 467
Target Start/End: Complemental strand, 16125734 - 16125661
Alignment:
Q  392 tgagattttaaattaaaaaacaataaaatgttgttgtgatatgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||  || | |||||||||||||||||||    
T  16125734 tgagattttaaattaaaaaacaataaaaggttgttgtgatatgagagaag--aatgaaacatgatttgtttgttat 16125661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 381 - 467
Target Start/End: Complemental strand, 11014544 - 11014460
Alignment:
Q  381 tatttaacggttgagattttaaattaaaaaacaataaaatgttgttgtgatatgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
    |||||||||||||| |||||||||||||||| ||||||| ||||||| ||||||||| |||  |||| ||||| | |||||||||||    
T  11014544 tatttaacggttgaaattttaaattaaaaaataataaaaggttgttgcgatatgagagaag--aagggaacataagttgtttgttat 11014460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 353 - 443
Target Start/End: Original strand, 33277356 - 33277446
Alignment:
Q  353 tttggatgcaaaacatgtggcnnnnnnntatttaacggttgagattttaaattaaaaaacaataaaatgttgttgtgatatgagaaaagaa 443  Q
    ||||||||||| |||||||||       ||||||| ||||||||||||||||||||||| |||| || ||||||| ||||||||| |||||    
T  33277356 tttggatgcaagacatgtggcaaaaaaatatttaatggttgagattttaaattaaaaaataatataaagttgttgcgatatgagagaagaa 33277446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 387 - 434
Target Start/End: Original strand, 6705297 - 6705344
Alignment:
Q  387 acggttgagattttaaattaaaaaacaataaaatgttgttgtgatatg 434  Q
    |||||||||||||||||||||||||||||||||  || ||||||||||    
T  6705297 acggttgagattttaaattaaaaaacaataaaagattattgtgatatg 6705344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 414
Target Start/End: Original strand, 16125572 - 16125633
Alignment:
Q  353 tttggatgcaaaacatgtggcnnnnnnntatttaacggttgagattttaaattaaaaaacaa 414  Q
    ||||||||||| |||||||||       ||||||||| |||| |||||||||||||||||||    
T  16125572 tttggatgcaagacatgtggcaaaaaaatatttaacgattgaaattttaaattaaaaaacaa 16125633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 8e-28; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 332 - 467
Target Start/End: Original strand, 17370096 - 17370229
Alignment:
Q  332 ctccatttactccctttagaatttggatgcaaaacatgtggcnnnnnnntatttaacggttgagattttaaattaaaaaacaataaaatgttgttgtgat 431  Q
    ||||||||||||| |||||  ||||||||||| |||||||||       ||| ||||||||||||||||||||||||||||||||||| |||||||  ||    
T  17370096 ctccatttactccatttagggtttggatgcaagacatgtggcaaaaaaatatctaacggttgagattttaaattaaaaaacaataaaaggttgttgcaat 17370195  T
Q  432 atgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
    |||||| |||  |||| |||||||||||||||||||    
T  17370196 atgagagaag--aagggaacatgatttgtttgttat 17370229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 331 - 467
Target Start/End: Complemental strand, 31194238 - 31194104
Alignment:
Q  331 gctccatttactccctttagaatttggatgcaaaacatgtggcnnnnnnntatttaacggttgagattttaaattaaaaaacaataaaatgttgttgtga 430  Q
    |||||||||||||| ||||   ||||||||||| |||||||||       |||  |||||||||||||||||||||||||||||||||| |||||||  |    
T  31194238 gctccatttactccatttaaggtttggatgcaagacatgtggcaaaaaaatatccaacggttgagattttaaattaaaaaacaataaaaggttgttgcca 31194139  T
Q  431 tatgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
    ||||||| |||  |||| |||||||||||||||||||    
T  31194138 tatgagagaag--aagggaacatgatttgtttgttat 31194104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 385 - 467
Target Start/End: Complemental strand, 39635022 - 39634942
Alignment:
Q  385 taacggttgagattttaaattaaaaaacaataaaatgttgttgtgatatgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||| ||  |||||||||||||||||||    
T  39635022 taacggttgagattttaaattaaaaaacaataaaaggttgttgcgatatgagagaagaagag--aacatgatttgtttgttat 39634942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 333 - 467
Target Start/End: Complemental strand, 42546620 - 42546488
Alignment:
Q  333 tccatttactccctttagaatttggatgcaaaacatgtggcnnnnnnntatttaacggttgagattttaaattaaaaaacaataaaatgttgttgtgata 432  Q
    |||||||||||| |||||  ||||||||||| ||||||| |        || ||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  42546620 tccatttactccatttagggtttggatgcaagacatgtgacaaaaaaacatctaacggttgagattttaaattaaaaaacaataaaaggttgttgcgata 42546521  T
Q  433 tgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
    ||||| |||  || | |||||||||||||||||||    
T  42546520 tgagagaag--aatggaacatgatttgtttgttat 42546488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 385 - 467
Target Start/End: Original strand, 304093 - 304173
Alignment:
Q  385 taacggttgagattttaaattaaaaaacaataaaatgttgttgtgatatgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
    ||||||||||||||||||||| |||||||||||||  ||||||| |||||||| |||  |||| |||||||||||||||||||    
T  304093 taacggttgagattttaaatttaaaaacaataaaagattgttgtaatatgagagaag--aagggaacatgatttgtttgttat 304173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 389 - 467
Target Start/End: Original strand, 14076754 - 14076830
Alignment:
Q  389 ggttgagattttaaattaaaaaacaataaaatgttgttgtgatatgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||| |||  |||| ||||| |||||||||||||    
T  14076754 ggttgagattttaaattaaaaaacaataaaaggttgttgcgatatgagagaag--aagggaacataatttgtttgttat 14076830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 336 - 414
Target Start/End: Complemental strand, 14076937 - 14076859
Alignment:
Q  336 atttactccctttagaatttggatgcaaaacatgtggcnnnnnnntatttaacggttgagattttaaattaaaaaacaa 414  Q
    ||||||||| |||||  ||||||||||| |||||||||       ||||||||||||||||||||||||||||||||||    
T  14076937 atttactccatttagggtttggatgcaagacatgtggcaaaaaaatatttaacggttgagattttaaattaaaaaacaa 14076859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 385 - 467
Target Start/End: Complemental strand, 32347116 - 32347036
Alignment:
Q  385 taacggttgagattttaaattaaaaaacaataaaatgttgttgtgatatgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
    |||| ||| |||| |||||||||||||||||||||  |||||| ||||||||| |||  |||| |||||||||||||||||||    
T  32347116 taactgtttagatcttaaattaaaaaacaataaaagattgttgcgatatgagagaag--aagggaacatgatttgtttgttat 32347036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 385 - 443
Target Start/End: Original strand, 8754740 - 8754797
Alignment:
Q  385 taacggttgagattttaaattaaaaaacaataaaatgttgttgtgatatgagaaaagaa 443  Q
    |||||||||| |||||||||||||||||||||||| |||||||||| ||||||| ||||    
T  8754740 taacggttgaaattttaaattaaaaaacaataaaaggttgttgtga-atgagaagagaa 8754797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 414
Target Start/End: Original strand, 42546385 - 42546460
Alignment:
Q  339 tactccctttagaatttggatgcaaaacatgtggcnnnnnnntatttaacggttgagattttaaattaaaaaacaa 414  Q
    |||||| |||||  ||||||||||| |||| ||||       ||| ||||||||||||||||||||||||||||||    
T  42546385 tactccatttagggtttggatgcaagacatttggcaaaaaaatatctaacggttgagattttaaattaaaaaacaa 42546460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 414
Target Start/End: Original strand, 39634885 - 39634914
Alignment:
Q  385 taacggttgagattttaaattaaaaaacaa 414  Q
    ||||||||||||||||||||||||||||||    
T  39634885 taacggttgagattttaaattaaaaaacaa 39634914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 331 - 464
Target Start/End: Original strand, 6911057 - 6911188
Alignment:
Q  331 gctccatttactccctttagaatttggatgcaaaacatgtggcnnnnnnntatttaacggttgagattttaaattaaaaaacaataaaatgttgttgtga 430  Q
    |||||||||||||| |||||  |||||||| || |||||||||       ||| ||||| ||||||||||||||||||||||||||||| ||||||| ||    
T  6911057 gctccatttactccatttagggtttggatgtaagacatgtggcaaaaaaatatctaacgattgagattttaaattaaaaaacaataaaaggttgttgcga 6911156  T
Q  431 tatgagaaaagaaaaggtaacatgatttgtttgt 464  Q
    ||||||| |||  |||| ||||||||||||||||    
T  6911157 tatgagagaag--aagggaacatgatttgtttgt 6911188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 331 - 467
Target Start/End: Original strand, 16324872 - 16325006
Alignment:
Q  331 gctccatttactccctttagaatttggatgcaaaacatgtggcnnnnnnntatttaacggttgagattttaaattaaaaaacaataaaatgttgttgtga 430  Q
    |||| ||||| ||| |||||  ||||||||||| ||||||| |       ||| ||||||||||||||||||||||||||||||||||| ||||||| ||    
T  16324872 gctcaatttaatccatttagggtttggatgcaagacatgtgacaaaaaaatatctaacggttgagattttaaattaaaaaacaataaaaggttgttgcga 16324971  T
Q  431 tatgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
    ||||||| |||  |||| |||||||||||||||||||    
T  16324972 tatgagagaag--aagggaacatgatttgtttgttat 16325006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 385 - 467
Target Start/End: Original strand, 41721909 - 41721989
Alignment:
Q  385 taacggttgagattttaaattaaaaaacaataaaatgttgttgtgatatgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||||||| |||  |||| |||||||||||||||||||    
T  41721909 taacggttgagattttaaattaaaaaataagaaaatgttgttgtgatatgagagaag--aagggaacatgatttgtttgttat 41721989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 385 - 467
Target Start/End: Original strand, 41403841 - 41403921
Alignment:
Q  385 taacggttgagattttaaattaaaaaacaataaaatgttgttgtgatatgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
    |||| |||||||||||||||||||||||||||||| ||||||| ||||||||| |||  |||| |||||||||||||||||||    
T  41403841 taacagttgagattttaaattaaaaaacaataaaaggttgttgcgatatgagagaag--aaggaaacatgatttgtttgttat 41403921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 335 - 467
Target Start/End: Original strand, 8489405 - 8489535
Alignment:
Q  335 catttactccctttagaatttggatgcaaaacatgtggcnnnnnnntatttaacggttgagattttaaattaaaaaacaataaaatgttgttgtgatatg 434  Q
    |||||| ||| |||||  |||||||| || |||||||||       ||| ||||| ||||||||||||||||||||||||||||| ||||||  ||||||    
T  8489405 catttattccatttagggtttggatgtaagacatgtggcaaaaaaatatctaacgattgagattttaaattaaaaaacaataaaaggttgttccgatatg 8489504  T
Q  435 agaaaagaaaaggtaacatgatttgtttgttat 467  Q
     ||||||  |||| |||||||||||||||||||    
T  8489505 ggaaaag--aagggaacatgatttgtttgttat 8489535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 385 - 467
Target Start/End: Original strand, 43801553 - 43801633
Alignment:
Q  385 taacggttgagattttaaattaaaaaacaataaaatgttgttgtgatatgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
    ||||||||||||||||||||||||||| ||||||| ||||||| ||||||| | ||||||  | |||||||||||||||||||    
T  43801553 taacggttgagattttaaattaaaaaataataaaaggttgttgggatatgaaagaagaaa--gaaacatgatttgtttgttat 43801633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 332 - 414
Target Start/End: Complemental strand, 6911301 - 6911219
Alignment:
Q  332 ctccatttactccctttagaatttggatgcaaaacatgtggcnnnnnnntatttaacggttgagattttaaattaaaaaacaa 414  Q
    ||||||||||||| |||||  ||||||||||| |||||||||       |||  |||||||||||||||||||||||||||||    
T  6911301 ctccatttactccatttagggtttggatgcaagacatgtggcaaaaaaatatccaacggttgagattttaaattaaaaaacaa 6911219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 335 - 467
Target Start/End: Original strand, 22781087 - 22781216
Alignment:
Q  335 catttactccctttagaatttggatgcaaaacatgtggcnnnnnnntatttaacggttgagattttaaattaaaaaacaataaaatgttgttgtgatatg 434  Q
    |||||||||| || ||  |||||||||||  ||||||||       ||| |||| ||||||||||||||||||||||||| |||| ||||||| ||||||    
T  22781087 catttactccattcagggtttggatgcaaggcatgtggcaaaaagatatctaacagttgagattttaaattaaaaaacaacaaaaggttgttgcgatatg 22781186  T
Q  435 agaaaagaaaaggtaacatgatttgtttgttat 467  Q
    | | |||  |||| ||||||| |||||||||||    
T  22781187 aaagaag--aagggaacatga-ttgtttgttat 22781216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 381 - 414
Target Start/End: Complemental strand, 22781276 - 22781243
Alignment:
Q  381 tatttaacggttgagattttaaattaaaaaacaa 414  Q
    ||||||||||||||||||||||||||||||||||    
T  22781276 tatttaacggttgagattttaaattaaaaaacaa 22781243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 467
Target Start/End: Complemental strand, 14999420 - 14999310
Alignment:
Q  355 tggatgcaaaacatgtggcnnnnnnntatttaacggttgagattttaaattaaaaaacaataaaatgttgttgtgatatgagaaaagaaaaggtaacatg 454  Q
    ||||||||||||||||| |       ||| |||| ||| ||||||||||||||||| ||||||||  ||||||  |||||||| |||  |||| |||||     
T  14999420 tggatgcaaaacatgtgacaaaaaagtatataacagttaagattttaaattaaaaagcaataaaagattgttgcaatatgagagaag--aagggaacata 14999323  T
Q  455 atttgtttgttat 467  Q
    |||||||||||||    
T  14999322 atttgtttgttat 14999310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 412
Target Start/End: Complemental strand, 43801744 - 43801663
Alignment:
Q  331 gctccatttactccctttagaatttggatgcaaaacatgtggcnnnnnnntatttaacggttgagattttaaattaaaaaac 412  Q
    |||||||||||||| |||||| ||||||||||| | |||||||       ||| |||| ||||| |||||||||||||||||    
T  43801744 gctccatttactccatttagagtttggatgcaagatatgtggcaaaaaaatatctaacagttgaaattttaaattaaaaaac 43801663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 419
Target Start/End: Complemental strand, 24829934 - 24829904
Alignment:
Q  389 ggttgagattttaaattaaaaaacaataaaa 419  Q
    |||||||||||||||||||||||||||||||    
T  24829934 ggttgagattttaaattaaaaaacaataaaa 24829904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 414
Target Start/End: Complemental strand, 16325063 - 16325034
Alignment:
Q  385 taacggttgagattttaaattaaaaaacaa 414  Q
    ||||||||||||||||||||||||||||||    
T  16325063 taacggttgagattttaaattaaaaaacaa 16325034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 414
Target Start/End: Complemental strand, 40621746 - 40621717
Alignment:
Q  385 taacggttgagattttaaattaaaaaacaa 414  Q
    ||||||||||||||||||||||||||||||    
T  40621746 taacggttgagattttaaattaaaaaacaa 40621717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 414
Target Start/End: Complemental strand, 41403982 - 41403949
Alignment:
Q  381 tatttaacggttgagattttaaattaaaaaacaa 414  Q
    ||||||||||||||||||||||||| ||||||||    
T  41403982 tatttaacggttgagattttaaatttaaaaacaa 41403949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 331 - 467
Target Start/End: Original strand, 43797380 - 43797514
Alignment:
Q  331 gctccatttactccctttagaatttggatgcaaaacatgtggcnnnnnnntatttaacggttgagattttaaattaaaaaacaataaaatgttgttgtga 430  Q
    |||||||||||||| ||||   ||||||||||| |||||||||       |||  |||||||||||||||||||||||||||||||||| |||||||  |    
T  43797380 gctccatttactccatttaaggtttggatgcaagacatgtggcaaaaaaatatccaacggttgagattttaaattaaaaaacaataaaaggttgttgcca 43797479  T
Q  431 tatgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
    ||||||| |||  |||| |||||||||||||||||||    
T  43797480 tatgagagaag--aagggaacatgatttgtttgttat 43797514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 331 - 467
Target Start/End: Original strand, 8799345 - 8799478
Alignment:
Q  331 gctccatttactccctttagaatttggatgcaaaacatgtggcnnnnnnntatttaacggttgagattttaaattaaaaaacaataaaatgttgttgtga 430  Q
    |||||||||||||| |||||  ||||||||||| |||||||||       ||| |||| |||||||||||||||||||||| ||| ||| ||||||| ||    
T  8799345 gctccatttactccatttagggtttggatgcaagacatgtggcaaaaatatatctaacagttgagattttaaattaaaaaataat-aaaggttgttgcga 8799443  T
Q  431 tatgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
    ||||||| |||  |||| |||||||||||||||||||    
T  8799444 tatgagagaag--aagggaacatgatttgtttgttat 8799478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 381 - 443
Target Start/End: Original strand, 29828755 - 29828817
Alignment:
Q  381 tatttaacggttgagattttaaattaaaaaacaataaaatgttgttgtgatatgagaaaagaa 443  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||    
T  29828755 tatttaacggttgagattttaaattaaaaaacaataaaaggttgttgcgatatgagagaagaa 29828817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 385 - 467
Target Start/End: Complemental strand, 48346197 - 48346117
Alignment:
Q  385 taacggttgagattttaaattaaaaaacaataaaatgttgttgtgatatgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
    ||||||||||||||||||||||||||||| ||||| ||||||| ||||||||| ||||| ||  |||||||||||||| ||||    
T  48346197 taacggttgagattttaaattaaaaaacagtaaaaggttgttgcgatatgagagaagaagag--aacatgatttgttttttat 48346117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 328 - 414
Target Start/End: Complemental strand, 46883688 - 46883602
Alignment:
Q  328 tatgctccatttactccctttagaatttggatgcaaaacatgtggcnnnnnnntatttaacggttgagattttaaattaaaaaacaa 414  Q
    ||||||||||||||||| |||||  ||||||||||| |||||||||       ||| ||||||||||||||||||||||||||||||    
T  46883688 tatgctccatttactccatttagggtttggatgcaagacatgtggcaaaaaaatatctaacggttgagattttaaattaaaaaacaa 46883602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 385 - 467
Target Start/End: Original strand, 4041265 - 4041345
Alignment:
Q  385 taacggttgagattttaaattaaaaaacaataaaatgttgttgtgatatgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
    |||||||||||||||||||||||||||||||||||  |||||| ||||||||| |||  |||| |||  ||||||||||||||    
T  4041265 taacggttgagattttaaattaaaaaacaataaaagattgttgcgatatgagagaag--aagggaactcgatttgtttgttat 4041345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 328 - 414
Target Start/End: Complemental strand, 8799592 - 8799506
Alignment:
Q  328 tatgctccatttactccctttagaatttggatgcaaaacatgtggcnnnnnnntatttaacggttgagattttaaattaaaaaacaa 414  Q
    ||||||||||||||||| |||||  ||| ||||||| |||||||||       ||| ||||||||||||||||||||||||||||||    
T  8799592 tatgctccatttactccatttagggtttagatgcaagacatgtggcaaaaaaatatataacggttgagattttaaattaaaaaacaa 8799506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 385 - 436
Target Start/End: Original strand, 46883497 - 46883548
Alignment:
Q  385 taacggttgagattttaaattaaaaaacaataaaatgttgttgtgatatgag 436  Q
    ||||||||||||||||||||||||||||||||||| |||||||  |||||||    
T  46883497 taacggttgagattttaaattaaaaaacaataaaaggttgttgcaatatgag 46883548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 335 - 414
Target Start/End: Complemental strand, 4041452 - 4041373
Alignment:
Q  335 catttactccctttagaatttggatgcaaaacatgtggcnnnnnnntatttaacggttgagattttaaattaaaaaacaa 414  Q
    |||||||||| |||||  ||||||||||| |||||||||       ||| ||||||||||||||||||||||||||||||    
T  4041452 catttactccatttagggtttggatgcaagacatgtggcaaaaaaatatctaacggttgagattttaaattaaaaaacaa 4041373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 385 - 467
Target Start/End: Complemental strand, 38500041 - 38499957
Alignment:
Q  385 taacggttgagattttaaattaaaaa----acaataaaatgttgttgtgatatgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
    |||| |||||||||||||||||||||    ||||||||| ||||||| ||||||||| |||  |||| |||||||||||||||||||    
T  38500041 taacagttgagattttaaattaaaaaacaaacaataaaaggttgttgcgatatgagagaag--aagggaacatgatttgtttgttat 38499957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 335 - 414
Target Start/End: Original strand, 53197020 - 53197099
Alignment:
Q  335 catttactccctttagaatttggatgcaaaacatgtggcnnnnnnntatttaacggttgagattttaaattaaaaaacaa 414  Q
    |||||||||  |||||  |||||||||||||||||||||       ||| ||||||||||||||||||||||||||||||    
T  53197020 catttactctatttagggtttggatgcaaaacatgtggcaaaaaaatatctaacggttgagattttaaattaaaaaacaa 53197099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 394 - 467
Target Start/End: Complemental strand, 53197195 - 53197127
Alignment:
Q  394 agattttaaattaaaaaacaataaaatgttgttgtgatatgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
    |||||||||||||||||||||||||| ||||||| ||||||||| ||||      |||||||||||||||||||    
T  53197195 agattttaaattaaaaaacaataaaaggttgttgcgatatgagagaaga-----gaacatgatttgtttgttat 53197127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 414
Target Start/End: Complemental strand, 29828954 - 29828871
Alignment:
Q  331 gctccatttactccctttagaatttggatgcaaaacatgtggcnnnnnnntatttaacggttgagattttaaattaaaaaacaa 414  Q
    |||||||||| ||| ||||| ||||||||| || | |||||||       ||| ||||||||||||||||||||||||||||||    
T  29828954 gctccatttattccatttaggatttggatgtaagatatgtggcaaaaaaatatctaacggttgagattttaaattaaaaaacaa 29828871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 420
Target Start/End: Complemental strand, 20383254 - 20383219
Alignment:
Q  385 taacggttgagattttaaattaaaaaacaataaaat 420  Q
    ||||||||||||||||||||||||||| ||||||||    
T  20383254 taacggttgagattttaaattaaaaaaaaataaaat 20383219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 467
Target Start/End: Complemental strand, 43797861 - 43797782
Alignment:
Q  385 taacggttgagattttaaattaaaaaacaataaaatgttgttgtgatatgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
    |||||| ||||||||||||||| |||||||||||| ||||||| ||||||| | |  |||||  ||||| |||||||||||||    
T  43797861 taacggatgagattttaaatta-aaaacaataaaaggttgttgcgatatgataga--aaaagagaacataatttgtttgttat 43797782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 414 - 467
Target Start/End: Original strand, 20383143 - 20383194
Alignment:
Q  414 ataaaatgttgttgtgatatgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
    |||||||||||||||||||||||| |||  |||| |||| ||||||||||||||    
T  20383143 ataaaatgttgttgtgatatgagagaag--aagggaacaagatttgtttgttat 20383194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 385 - 467
Target Start/End: Complemental strand, 27172018 - 27171938
Alignment:
Q  385 taacggttgagattttaaattaaaaaacaataaaatgttgttgtgatatgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||  |||| |||||||||||||||||||    
T  27172018 taacggttgagattttcaattaaaaaacaataaaaggttgttgtgatatgagagaag--aagggaacatgatttgtttgttat 27171938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 385 - 467
Target Start/End: Original strand, 33156537 - 33156617
Alignment:
Q  385 taacggttgagattttaaattaaaaaacaataaaatgttgttgtgatatgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||  |||| |||||||||||||||||||    
T  33156537 taacgattgagattttaaattaaaaaacaataaaaagttgttgtgatatgagagaag--aagggaacatgatttgtttgttat 33156617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 332 - 467
Target Start/End: Original strand, 34970014 - 34970147
Alignment:
Q  332 ctccatttactccctttagaatttggatgcaaaacatgtggcnnnnnnntatttaacggttgagattttaaattaaaaaacaataaaatgttgttgtgat 431  Q
    ||||||||||||  ||||| |||||||||||| ||||||||        ||| ||||||||||||||||||||||||||||||||||| ||||||| |||    
T  34970014 ctccatttactcaatttaggatttggatgcaagacatgtggtaaaaaaatatctaacggttgagattttaaattaaaaaacaataaaaggttgttgcgat 34970113  T
Q  432 atgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
    |||||| |||  |||| ||||||  |||||||||||    
T  34970114 atgagagaag--aagggaacatgggttgtttgttat 34970147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 385 - 467
Target Start/End: Complemental strand, 42083035 - 42082955
Alignment:
Q  385 taacggttgagattttaaattaaaaaacaataaaatgttgttgtgatatgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
    |||||||||||||||||||||| |||| ||||||| ||||||||||||||||| |||  |||| |||||||||||||||||||    
T  42083035 taacggttgagattttaaattataaaataataaaaggttgttgtgatatgagagaag--aagggaacatgatttgtttgttat 42082955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 385 - 467
Target Start/End: Original strand, 3385393 - 3385473
Alignment:
Q  385 taacggttgagattttaaattaaaaaacaataaaatgttgttgtgatatgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
    |||||||| |||||||||||||||||| ||||||| ||||||| ||||||||| ||||| ||  |||||||||||||||||||    
T  3385393 taacggttaagattttaaattaaaaaataataaaaggttgttgcgatatgagagaagaagag--aacatgatttgtttgttat 3385473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 385 - 467
Target Start/End: Original strand, 5771990 - 5772070
Alignment:
Q  385 taacggttgagattttaaattaaaaaacaataaaatgttgttgtgatatgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
    ||||||||||||||||||||||||| || |||||| ||||||| ||||| |||||||  |||| |||||||||||||||||||    
T  5771990 taacggttgagattttaaattaaaagactataaaaggttgttgcgatataagaaaag--aagggaacatgatttgtttgttat 5772070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 328 - 467
Target Start/End: Complemental strand, 13947198 - 13947061
Alignment:
Q  328 tatgctccatttactccctttagaatttggatgcaaaacatgtggcnnnnnnntatttaacggttgagattttaaattaaaaaacaataaaatgttgttg 427  Q
    ||||||||||||| ||| |||||  |||||||| || ||||||||        ||| |||||||||| |||||||||||||||||||||||| |||||||    
T  13947198 tatgctccatttattccatttagcgtttggatgtaagacatgtggtaaaaaaatatgtaacggttgatattttaaattaaaaaacaataaaaggttgttg 13947099  T
Q  428 tgatatgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
     ||||  ||| |||  |||| |||||||||||||||||||    
T  13947098 cgatacaagagaag--aaggaaacatgatttgtttgttat 13947061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 385 - 467
Target Start/End: Complemental strand, 49777042 - 49776957
Alignment:
Q  385 taacggttgagattttaaattaaaaaacaataaaatgttgttgtgatatgagaaaagaa---aaggtaacatgatttgtttgttat 467  Q
    ||||||||||||||||||||||||||||||||||| |||||||  |||||| | |||||   |||| |||||||||||||||||||    
T  49777042 taacggttgagattttaaattaaaaaacaataaaaggttgttgcaatatgaaagaagaaaagaagggaacatgatttgtttgttat 49776957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 385 - 467
Target Start/End: Original strand, 24883052 - 24883131
Alignment:
Q  385 taacggttgagattttaaattaaaaaacaataaaatgttgttgtgatatgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
    ||||||||||||||||||||| |||| |||||||| ||||||| ||||||||| ||||| ||  |||||||||||||||||||    
T  24883052 taacggttgagattttaaatt-aaaatcaataaaaggttgttgcgatatgagagaagaagag--aacatgatttgtttgttat 24883131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 389 - 467
Target Start/End: Original strand, 33400943 - 33401019
Alignment:
Q  389 ggttgagattttaaattaaaaaacaataaaatgttgttgtgatatgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
    |||| |||||||||| ||||||||||||||| ||||||| ||||||||| |||  |||| |||||||||||||||||||    
T  33400943 ggttaagattttaaactaaaaaacaataaaaagttgttgcgatatgagagaag--aagggaacatgatttgtttgttat 33401019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 385 - 463
Target Start/End: Original strand, 38338749 - 38338825
Alignment:
Q  385 taacggttgagattttaaattaaaaaacaataaaatgttgttgtgatatgagaaaagaaaaggtaacatgatttgtttg 463  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||| ||| |  | |||| |||||||||||||||    
T  38338749 taacggttgagattttaaattaaaaaacaataaaaggttgttgcgatataagaga--ataagggaacatgatttgtttg 38338825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 385 - 467
Target Start/End: Complemental strand, 39781282 - 39781203
Alignment:
Q  385 taacggttgagattttaaattaaaaaacaataaaatgttgttgtgatatgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
    ||||||||||||||||||||||||||||||| ||| ||||||| ||||||||| |||  |||| ||||| |||||||||||||    
T  39781282 taacggttgagattttaaattaaaaaacaat-aaaggttgttgcgatatgagagaag--aagggaacataatttgtttgttat 39781203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 389 - 467
Target Start/End: Complemental strand, 37949003 - 37948927
Alignment:
Q  389 ggttgagattttaaattaaaaaacaataaaatgttgttgtgatatgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
    |||| |||||||||||||||||  ||||||| ||||||| ||||||||| ||||||  | |||||||||||||||||||    
T  37949003 ggttaagattttaaattaaaaataaataaaaggttgttgcgatatgagagaagaaa--ggaacatgatttgtttgttat 37948927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 331 - 416
Target Start/End: Complemental strand, 24883241 - 24883156
Alignment:
Q  331 gctccatttactccctttagaatttggatgcaaaacatgtggcnnnnnnntatttaacggttgagattttaaattaaaaaacaata 416  Q
    |||||||||||||| |||||  ||||||||||| | |||||||       ||| ||||||||||||||||||||||||||| ||||    
T  24883241 gctccatttactccatttagggtttggatgcaagatatgtggcaaaaaaatatctaacggttgagattttaaattaaaaaaaaata 24883156  T

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Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 414
Target Start/End: Complemental strand, 43297114 - 43297041
Alignment:
Q  341 ctccctttagaatttggatgcaaaacatgtggcnnnnnnntatttaacggttgagattttaaattaaaaaacaa 414  Q
    |||| ||||| |||||||||||| ||||||| |       ||| ||||||||||||||||||||||||||||||    
T  43297114 ctccatttaggatttggatgcaagacatgtgccaaaaaaatatctaacggttgagattttaaattaaaaaacaa 43297041  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 414
Target Start/End: Original strand, 13947004 - 13947033
Alignment:
Q  385 taacggttgagattttaaattaaaaaacaa 414  Q
    ||||||||||||||||||||||||||||||    
T  13947004 taacggttgagattttaaattaaaaaacaa 13947033  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 414
Target Start/End: Complemental strand, 33156674 - 33156645
Alignment:
Q  385 taacggttgagattttaaattaaaaaacaa 414  Q
    ||||||||||||||||||||||||||||||    
T  33156674 taacggttgagattttaaattaaaaaacaa 33156645  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 414
Target Start/End: Original strand, 37948870 - 37948899
Alignment:
Q  385 taacggttgagattttaaattaaaaaacaa 414  Q
    ||||||||||||||||||||||||||||||    
T  37948870 taacggttgagattttaaattaaaaaacaa 37948899  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 414
Target Start/End: Original strand, 42082895 - 42082924
Alignment:
Q  385 taacggttgagattttaaattaaaaaacaa 414  Q
    ||||||||||||||||||||||||||||||    
T  42082895 taacggttgagattttaaattaaaaaacaa 42082924  T

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Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 331 - 467
Target Start/End: Complemental strand, 11790135 - 11790001
Alignment:
Q  331 gctccatttactccctttagaatttggatgcaaaacatgtggcnnnnnnntatttaacggttgagattttaaattaaaaaacaataaaatgttgttgtga 430  Q
    |||||||||| | | |||||  ||||||||||| |||||||||       ||| |||||||||||||||||||||||||||||||||||  |||||| ||    
T  11790135 gctccatttatttcatttagggtttggatgcaagacatgtggcaaaaaaatatctaacggttgagattttaaattaaaaaacaataaaagattgttgcga 11790036  T
Q  431 tatgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
     |||||| |||  ||||  ||||||||||||||||||    
T  11790035 catgagagaag--aaggggacatgatttgtttgttat 11790001  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 335 - 467
Target Start/End: Complemental strand, 19037989 - 19037861
Alignment:
Q  335 catttactccctttagaatttggatgcaaaacatgtggcnnnnnnntatttaacggttgagattttaaattaaaaaacaataaaatgttgttgtgatatg 434  Q
    |||||||||| ||||| |||||||||||| |||||||||        || ||||| ||||||| ||||||||||||||||||||| ||||||| ||||||    
T  19037989 catttactccatttaggatttggatgcaagacatgtggcaaaaaa--atctaacgattgagatgttaaattaaaaaacaataaaaggttgttgcgatatg 19037892  T
Q  435 agaaaagaaaaggtaacatgatttgtttgttat 467  Q
    ||| |  |||| | |||||||||||||||||||    
T  19037891 agaga--aaaatggaacatgatttgtttgttat 19037861  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 385 - 467
Target Start/End: Complemental strand, 1025125 - 1025045
Alignment:
Q  385 taacggttgagattttaaattaaaaaacaataaaatgttgttgtgatatgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||||||  |||||  | ||||| |||||||||||||    
T  1025125 taacggttgagattttaaattaaaaaacaataaaatgtggttgcgatatgagaggagaaa--gaaacataatttgtttgttat 1025045  T

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Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 381 - 467
Target Start/End: Complemental strand, 32591371 - 32591287
Alignment:
Q  381 tatttaacggttgagattttaaattaaaaaacaataaaatgttgttgtgatatgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
    ||||||| | ||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||  | | |||||||||||||||||    
T  32591371 tatttaatgattgagattttaaattaaaaaacaataaaaggttgttgcgatatgagagaagaaa--ggagcatgatttgtttgttat 32591287  T

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Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 336 - 443
Target Start/End: Original strand, 7062005 - 7062112
Alignment:
Q  336 atttactccctttagaatttggatgcaaaacatgtggcnnnnnnntatttaacggttgagattttaaattaaaaaacaataaaatgttgttgtgatatga 435  Q
    ||||||||| ||||   ||||||||||| |||||||||       ||| |||||||||||||||| ||||||||| |||||||| |||||||||||||||    
T  7062005 atttactccatttatggtttggatgcaagacatgtggcaaaaaaatatataacggttgagatttttaattaaaaatcaataaaaggttgttgtgatatga 7062104  T
Q  436 gaaaagaa 443  Q
    || |||||    
T  7062105 gagaagaa 7062112  T

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Target: chr4; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 331 - 443
Target Start/End: Original strand, 50544284 - 50544396
Alignment:
Q  331 gctccatttactccctttagaatttggatgcaaaacatgtggcnnnnnnntatttaacggttgagattttaaattaaaaaacaataaaatgttgttgtga 430  Q
    |||||||||| ||  |||||  ||||||||||| |||||||||       ||| |||||| |||||||||||||||||||| ||||||| ||||||| ||    
T  50544284 gctccatttattctatttagggtttggatgcaagacatgtggcaaaaagatatctaacggatgagattttaaattaaaaaataataaaaggttgttgcga 50544383  T
Q  431 tatgagaaaagaa 443  Q
    ||||||| |||||    
T  50544384 tatgagagaagaa 50544396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 387 - 467
Target Start/End: Complemental strand, 9551442 - 9551363
Alignment:
Q  387 acggttgagattttaaattaa-aaaacaataaaatgttgttgtgatatgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
    ||||||||||||||||||||| |||||||||||| ||||||| | ||||||| |||  |||| |||||||||||||||||||    
T  9551442 acggttgagattttaaattaaaaaaacaataaaaggttgttgcgttatgagagaag--aagggaacatgatttgtttgttat 9551363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 385 - 467
Target Start/End: Original strand, 46993149 - 46993231
Alignment:
Q  385 taacggttgagattttaaattaaaaaacaataaaatgttgttgtgatatgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
    ||||||||||||| |||||||||||||| ||||||  |||||| ||||||||| || | || | |||||||||||||||||||    
T  46993149 taacggttgagatgttaaattaaaaaacgataaaagattgttgcgatatgagagaaaagaatgaaacatgatttgtttgttat 46993231  T

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Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 385 - 467
Target Start/End: Original strand, 26297395 - 26297475
Alignment:
Q  385 taacggttgagattttaaattaaaaaacaataaaatgttgttgtgatatgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
    ||||| ||||||||||||||||||||| ||||||| |||||||  |||||||| |||  |||| ||||| |||||||||||||    
T  26297395 taacgattgagattttaaattaaaaaataataaaaggttgttgcaatatgagagaag--aaggaaacataatttgtttgttat 26297475  T

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Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 335 - 467
Target Start/End: Original strand, 3556398 - 3556526
Alignment:
Q  335 catttactccctttagaatttggatgcaaaacatgtggcnnnnnnntatttaacggttgagattttaaattaaaaaacaataaaatgttgttgtgatatg 434  Q
    |||||||||| ||||   ||||||||||| |||||| ||       ||| ||| ||||||||||||| ||||||| ||||||||| ||||||| ||||||    
T  3556398 catttactccatttaaggtttggatgcaagacatgttgcaaaaaaatatctaagggttgagattttatattaaaa-acaataaaaggttgttgcgatatg 3556496  T
Q  435 agaaaagaaaaggtaacatgatttgtttgttat 467  Q
    ||| |||||   | |||||||||||||||||||    
T  3556497 agagaagaa---ggaacatgatttgtttgttat 3556526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 467
Target Start/End: Complemental strand, 5466055 - 5465992
Alignment:
Q  402 aattaaaaaacaataaaatgttgttgtgatatgagaaaagaaaaggtaacatgatttgtttgttat 467  Q
    ||||||||||||||||||  |||||| |||||||||||||  |||| |||||||||| ||||||||    
T  5466055 aattaaaaaacaataaaagattgttgcgatatgagaaaag--aagggaacatgatttatttgttat 5465992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 328 - 414
Target Start/End: Original strand, 19037747 - 19037833
Alignment:
Q  328 tatgctccatttactccctttagaatttggatgcaaaacatgtggcnnnnnnntatttaacggttgagattttaaattaaaaaacaa 414  Q
    ||||||||||||||||| ||||  |||||||||||| ||||| | |        || ||||||||||||||||||||||||||||||    
T  19037747 tatgctccatttactccatttaagatttggatgcaagacatgcgacaaaaaaaaatctaacggttgagattttaaattaaaaaacaa 19037833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 414
Target Start/End: Original strand, 11789891 - 11789970
Alignment:
Q  335 catttactccctttagaatttggatgcaaaacatgtggcnnnnnnntatttaacggttgagattttaaattaaaaaacaa 414  Q
    |||||||||| |||||  ||| ||||||| | |||||||       |||| |||||||||||||||||||||||||||||    
T  11789891 catttactccatttagggtttagatgcaagatatgtggcaaaaaaatattcaacggttgagattttaaattaaaaaacaa 11789970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 414
Target Start/End: Original strand, 5465935 - 5465964
Alignment:
Q  385 taacggttgagattttaaattaaaaaacaa 414  Q
    ||||||||||||||||||||||||||||||    
T  5465935 taacggttgagattttaaattaaaaaacaa 5465964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 414
Target Start/End: Original strand, 9551306 - 9551335
Alignment:
Q  385 taacggttgagattttaaattaaaaaacaa 414  Q
    ||||||||||||||||||||||||||||||    
T  9551306 taacggttgagattttaaattaaaaaacaa 9551335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 419
Target Start/End: Original strand, 17914800 - 17914829
Alignment:
Q  390 gttgagattttaaattaaaaaacaataaaa 419  Q
    ||||||||||||||||||||||||||||||    
T  17914800 gttgagattttaaattaaaaaacaataaaa 17914829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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