View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18043_low_6 (Length: 423)
Name: NF18043_low_6
Description: NF18043
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18043_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 15 - 407
Target Start/End: Original strand, 32109243 - 32109635
Alignment:
| Q |
15 |
atatacttgagcatttccttgggaaccatgttttttcgaagctagtatagacgatcataatggttattaacaatcagggtcattttagtccttaaaatta |
114 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32109243 |
atatacttgagcatttccttgggaaccaaattttttcgaagctagtatagacgatcataatggtcattaacaatcagggtcattttagtccttaaaatta |
32109342 |
T |
|
| Q |
115 |
gagtttagacactagaattgtcctgaatatggactaacgttattgaaagattttcaatttcacgaatcatttcaaagtttcgttactttcaaaggctaaa |
214 |
Q |
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|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32109343 |
gagtttagacactacaattctcctgaatatggactaacgttattgaaagattttcaatttcacgaatcatttcaaagtttcgttactttcaaaggctaaa |
32109442 |
T |
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| Q |
215 |
ttaaattgctcgactcctacaacttcagacacaatttgtgatacatctccgttgctcaagtaaatttgtgatacaatttcaaagactaaattgttcgacc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32109443 |
ttaaattgctcgactcctacaacttcagacacaatttgtgatacatctccgttgctcaagtaaatttgtgatacaatttcaaagactaaattgttcgacc |
32109542 |
T |
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| Q |
315 |
ctacataactaagtagatttaaatatgtaatcaccttggatatgggttgcctttgacaactttctgcccatatttgcgccatctatatccatc |
407 |
Q |
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| T |
32109543 |
ctacataactaagtagatttaaatatgtaatcaccttggatatgggttgcctttgacaactttctgcccatatttgcgccatctatatccatc |
32109635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 344 - 407
Target Start/End: Original strand, 18875574 - 18875637
Alignment:
| Q |
344 |
atcaccttggatatgggttgcctttgacaactttctgcccatatttgcgccatctatatccatc |
407 |
Q |
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| T |
18875574 |
atcacctaggataagggtttcctttgacaactttctgtccatattttcgccatctataaccatc |
18875637 |
T |
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