View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18044_high_5 (Length: 273)

Name: NF18044_high_5
Description: NF18044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18044_high_5
NF18044_high_5
[»] chr6 (12 HSPs)
chr6 (123-254)||(20243610-20243741)
chr6 (123-254)||(22137594-22137725)
chr6 (90-254)||(24559286-24559457)
chr6 (91-219)||(800494-800623)
chr6 (105-214)||(34208260-34208370)
chr6 (105-242)||(5570580-5570715)
chr6 (91-206)||(3098125-3098238)
chr6 (105-208)||(19242278-19242381)
chr6 (124-215)||(4286548-4286639)
chr6 (109-159)||(28050800-28050850)
chr6 (105-148)||(18744594-18744637)
chr6 (91-153)||(446097-446159)
[»] chr4 (22 HSPs)
chr4 (91-222)||(31931037-31931168)
chr4 (92-256)||(13850173-13850336)
chr4 (91-216)||(42420497-42420621)
chr4 (91-218)||(18411935-18412062)
chr4 (91-189)||(17210640-17210738)
chr4 (93-219)||(31323658-31323783)
chr4 (91-224)||(14331456-14331589)
chr4 (91-224)||(24606072-24606205)
chr4 (91-197)||(21710903-21711009)
chr4 (91-180)||(27759014-27759103)
chr4 (91-178)||(31825611-31825698)
chr4 (91-159)||(31825365-31825433)
chr4 (92-215)||(13865740-13865863)
chr4 (109-207)||(44099821-44099917)
chr4 (105-159)||(39039512-39039566)
chr4 (91-176)||(49063349-49063434)
chr4 (105-212)||(23125303-23125409)
chr4 (91-219)||(20779690-20779826)
chr4 (105-154)||(32938631-32938680)
chr4 (105-158)||(12587152-12587205)
chr4 (91-128)||(20759755-20759792)
chr4 (91-128)||(20766146-20766183)
[»] chr1 (20 HSPs)
chr1 (91-240)||(48707533-48707681)
chr1 (91-256)||(15470984-15471149)
chr1 (91-256)||(21760992-21761156)
chr1 (105-221)||(25804195-25804311)
chr1 (91-219)||(48569167-48569295)
chr1 (91-256)||(26088768-26088930)
chr1 (91-176)||(21485388-21485473)
chr1 (91-178)||(39224962-39225049)
chr1 (90-180)||(3658023-3658113)
chr1 (91-212)||(5764535-5764656)
chr1 (105-210)||(12025646-12025750)
chr1 (91-212)||(18169358-18169479)
chr1 (105-210)||(27799091-27799196)
chr1 (91-254)||(27259346-27259516)
chr1 (91-159)||(49599611-49599679)
chr1 (105-159)||(34335726-34335780)
chr1 (91-159)||(41875640-41875708)
chr1 (91-219)||(46182307-46182436)
chr1 (91-159)||(18841834-18841902)
chr1 (146-256)||(22923467-22923577)
[»] chr7 (15 HSPs)
chr7 (91-215)||(8726971-8727095)
chr7 (90-224)||(39477795-39477929)
chr7 (91-240)||(31266841-31266991)
chr7 (94-210)||(7414627-7414743)
chr7 (91-211)||(27318453-27318573)
chr7 (91-215)||(18236902-18237025)
chr7 (91-219)||(28065746-28065873)
chr7 (91-219)||(12082388-12082515)
chr7 (92-253)||(16887077-16887230)
chr7 (91-224)||(21615512-21615635)
chr7 (91-144)||(18146354-18146407)
chr7 (92-197)||(13798669-13798774)
chr7 (113-178)||(40592102-40592167)
chr7 (91-154)||(11823872-11823935)
chr7 (204-240)||(41935899-41935935)
[»] chr5 (15 HSPs)
chr5 (91-256)||(15798709-15798873)
chr5 (91-250)||(10975248-10975406)
chr5 (91-218)||(28717537-28717664)
chr5 (92-229)||(2598668-2598805)
chr5 (91-219)||(4113845-4113973)
chr5 (91-197)||(7081639-7081745)
chr5 (91-219)||(25361210-25361336)
chr5 (112-210)||(16418737-16418835)
chr5 (90-197)||(33369990-33370097)
chr5 (91-154)||(36317665-36317728)
chr5 (91-224)||(12804885-12805018)
chr5 (91-159)||(23229359-23229427)
chr5 (91-224)||(12742070-12742199)
chr5 (109-159)||(22858358-22858408)
chr5 (91-211)||(19747534-19747650)
[»] chr3 (17 HSPs)
chr3 (91-224)||(7953534-7953668)
chr3 (90-180)||(13626320-13626410)
chr3 (90-214)||(17370275-17370398)
chr3 (92-219)||(14264882-14265009)
chr3 (105-240)||(1639235-1639367)
chr3 (91-219)||(48088308-48088436)
chr3 (90-208)||(36722110-36722228)
chr3 (91-197)||(37280813-37280919)
chr3 (91-210)||(53561233-53561353)
chr3 (105-212)||(8634163-8634270)
chr3 (91-154)||(6465090-6465153)
chr3 (90-212)||(19234530-19234652)
chr3 (91-213)||(39417710-39417831)
chr3 (91-176)||(25577342-25577427)
chr3 (116-240)||(43687537-43687670)
chr3 (105-158)||(29635550-29635603)
chr3 (204-240)||(13626266-13626302)
[»] chr8 (6 HSPs)
chr8 (91-224)||(40414061-40414194)
chr8 (105-210)||(22843970-22844075)
chr8 (91-180)||(16575064-16575153)
chr8 (91-215)||(14998731-14998855)
chr8 (91-180)||(43692512-43692601)
chr8 (105-159)||(12785845-12785899)
[»] chr2 (13 HSPs)
chr2 (91-240)||(26618095-26618243)
chr2 (91-224)||(32734108-32734241)
chr2 (105-209)||(40500770-40500874)
chr2 (90-214)||(21557373-21557497)
chr2 (91-197)||(16706175-16706281)
chr2 (91-197)||(20147470-20147576)
chr2 (91-197)||(29905933-29906038)
chr2 (91-159)||(29110556-29110624)
chr2 (105-159)||(5307118-5307172)
chr2 (91-197)||(42241848-42241954)
chr2 (91-219)||(18877973-18878100)
chr2 (92-219)||(27651407-27651533)
chr2 (111-159)||(39091962-39092010)
[»] scaffold0489 (1 HSPs)
scaffold0489 (91-217)||(7491-7616)
[»] scaffold0121 (1 HSPs)
scaffold0121 (91-212)||(4680-4800)
[»] scaffold0004 (1 HSPs)
scaffold0004 (105-147)||(39325-39367)


Alignment Details
Target: chr6 (Bit Score: 92; Significance: 9e-45; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 123 - 254
Target Start/End: Complemental strand, 20243741 - 20243610
Alignment:
Q  123 ttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaaagattttagatgtgaaatgaggaaatgagttg 222  Q
    ||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||| ||||| || |||||||| |||||||||||||||||||||||    
T  20243741 ttattggagtgttggttgatttgaacttgaagaaattagagatttagttgatttgagagagtttgtagagattttaaatgtgaaatgaggaaatgagttg 20243642  T
Q  223 ttgtctgatctttaaaagaatacgcaacgtga 254  Q
    ||||||||| |||||||| |||| ||||||||    
T  20243641 ttgtctgatttttaaaaggatacacaacgtga 20243610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 123 - 254
Target Start/End: Complemental strand, 22137725 - 22137594
Alignment:
Q  123 ttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaaagattttagatgtgaaatgaggaaatgagttg 222  Q
    ||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||| ||||| || |||||||| |||||||||||||||||||||||    
T  22137725 ttattggagtgttggttgatttgaacttgaagaaattagagatttagttgatttgagagagtttgtagagattttaaatgtgaaatgaggaaatgagttg 22137626  T
Q  223 ttgtctgatctttaaaagaatacgcaacgtga 254  Q
    ||||||||| |||||||| |||| ||||||||    
T  22137625 ttgtctgatttttaaaaggatacacaacgtga 22137594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 90 - 254
Target Start/End: Complemental strand, 24559457 - 24559286
Alignment:
Q  90 tgttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagttttta 189  Q
    ||||||| |||| | |||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||| |||||||||| | |||||||     
T  24559457 tgttaatagtgtttgattatgaaaacttacttgttattgaagtgttgtttgatttgaactggaagaaattagggatttggttgatttgaaagagtttttg 24559358  T
Q  190 aagattttagatgt-------gaaatgaggaaatgagttgttgtctgatctttaaaagaatacgcaacgtga 254  Q
     |||||||||||||       ||||||||||||| || |||||||||||||||||||| | |||||| ||||    
T  24559357 gagattttagatgtgaaagaggaaatgaggaaataagctgttgtctgatctttaaaaggacacgcaatgtga 24559286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 91 - 219
Target Start/End: Complemental strand, 800623 - 800494
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaag-ttttta 189  Q
    ||||||||||| | || |||||||||||||||||||||||| |||||||||||||||||||||| ||||  |||||| | |||||||||| || |||||     
T  800623 gttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaacttgaaggaattttggatttgggtgatttgagagagatttttt 800524  T
Q  190 aagattttagatgtgaaatgaggaaatgag 219  Q
     |||||||||||| ||||||||||||||||    
T  800523 gagattttagatgagaaatgaggaaatgag 800494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 105 - 214
Target Start/End: Complemental strand, 34208370 - 34208260
Alignment:
Q  105 attatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaa--gtttttaaagattttagatg 202  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||  || ||| | |||||||||| |   |||||| ||||||||||||    
T  34208370 attatgaaaacttacttgttattggagcgttg-ttgatttgaacttgaagaaattgagggttttgatgatttgagagattttttttagagattttagatg 34208272  T
Q  203 tgaaatgaggaa 214  Q
    ||||||||||||    
T  34208271 tgaaatgaggaa 34208260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 105 - 242
Target Start/End: Complemental strand, 5570715 - 5570580
Alignment:
Q  105 attatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaaagattttagatgtg 204  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||  ||||| | |||| | ||||||||||||| ||||  |||| | | |   |    
T  5570715 attacgaaaacttacttgttattggagtgttgtttgatttgaacttgaaagaattatgaatttgggtgatttgagaaagatttt--agatgtgaaaaaag 5570618  T
Q  205 aaatgaggaaatgagttgttgtctgatctttaaaagaa 242  Q
    |||||||||||||||||| |||||| ||||||||||||    
T  5570617 aaatgaggaaatgagttgatgtctggtctttaaaagaa 5570580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 91 - 206
Target Start/End: Original strand, 3098125 - 3098238
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaa 190  Q
    ||||||| ||| | ||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||  |||||||| |||||||||| || ||||      
T  3098125 gttaatgatgtttgattatgaaaacttacttgttattggagtgttgtttgatttgaacttaaaggaattttggatttagatgatttgagagagatttt-- 3098222  T
Q  191 agattttagatgtgaa 206  Q
    ||||||||||| ||||    
T  3098223 agattttagatttgaa 3098238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 105 - 208
Target Start/End: Complemental strand, 19242381 - 19242278
Alignment:
Q  105 attatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaaagattttagatgtg 204  Q
    |||||||| |||||||| |||||| || |||| |||||||||||||||||||||    ||||| | |||||||||| |||||||| |||||||||||||     
T  19242381 attatgaatacttacttattattgcagtgttggttgatttgaacttgaagaaatcgaagatttggatgatttgagagagtttttagagattttagatgtt 19242282  T
Q  205 aaat 208  Q
    ||||    
T  19242281 aaat 19242278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 124 - 215
Target Start/End: Complemental strand, 4286639 - 4286548
Alignment:
Q  124 tattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaaagattttagatgtgaaatgaggaaa 215  Q
    |||||||| |||||||||||||||||||||| ||||   ||||| | |||||||||| || ||||  |||||||||||| ||||||||||||    
T  4286639 tattggagtgttgtttgatttgaacttgaaggaatttttgatttggatgatttgagagagatttttgagattttagatgagaaatgaggaaa 4286548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 28050850 - 28050800
Alignment:
Q  109 tgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaatt 159  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||| ||||    
T  28050850 tgaaaacttacttgttattggagtgttgtttgatttgaagttgaaggaatt 28050800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 148
Target Start/End: Original strand, 18744594 - 18744637
Alignment:
Q  105 attatgaaaacttacttgttattggagcgttgtttgatttgaac 148  Q
    |||||||||||||||||||||||||||  |||||||||||||||    
T  18744594 attatgaaaacttacttgttattggagttttgtttgatttgaac 18744637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 153
Target Start/End: Original strand, 446097 - 446159
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaa 153  Q
    ||||||||||| | | ||||||||||||||| |||||| ||  ||||||||||||||||||||    
T  446097 gttaatggtgtttgactatgaaaacttacttattattgaagtattgtttgatttgaacttgaa 446159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 9e-45; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 91 - 222
Target Start/End: Complemental strand, 31931168 - 31931037
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaa 190  Q
    ||||||||||| | ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||| |||||||      
T  31931168 gttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaacttgaagaaattagggatttcgttgatttgagagagtttttgg 31931069  T
Q  191 agattttagatgtgaaatgaggaaatgagttg 222  Q
    |||||| ||||| |||||||||||||||||||    
T  31931068 agatttgagatgagaaatgaggaaatgagttg 31931037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 92 - 256
Target Start/End: Complemental strand, 13850336 - 13850173
Alignment:
Q  92 ttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaaa 191  Q
    |||||||||| | |||||||||||||||||||||  |||| | |||||||||||||||||||| ||||  |||||| | |||||||||| |  ||||  |    
T  13850336 ttaatggtgtttgattatgaaaacttacttgttaagggagtgatgtttgatttgaacttgaaggaattttggatttgggtgatttgagagacattttgga 13850237  T
Q  192 gattttagatgtgaaatgaggaaatgagttgttgtctgatctttaaaagaatacgcaacgtgagt 256  Q
    |||||||||||  || |||||||||||| ||||||||| ||||||||| || |||||||||||||    
T  13850236 gattttagatgaaaagtgaggaaatgaggtgttgtctg-tctttaaaacaacacgcaacgtgagt 13850173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 91 - 216
Target Start/End: Complemental strand, 42420621 - 42420497
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaa 190  Q
    ||||||||||| | ||||||||||||||||||||||||||  |||||||||||||||||||||| ||||  |||||| | |||||||||| || ||||      
T  42420621 gttaatggtgtttgattatgaaaacttacttgttattggaatgttgtttgatttgaacttgaaggaatt-tggatttgggtgatttgagagagattttgg 42420523  T
Q  191 agattttagatgtgaaatgaggaaat 216  Q
    |||||||||||| |||||||| ||||    
T  42420522 agattttagatgggaaatgagaaaat 42420497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 91 - 218
Target Start/End: Complemental strand, 18412062 - 18411935
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaa 190  Q
    ||||||||||| | ||||||||||||||||||||| ||||| || ||||||||||||||||||||||||  | |||| | | |||||||| |  ||||      
T  18412062 gttaatggtgtttgattatgaaaacttacttgttaatggagtgtggtttgatttgaacttgaagaaattttgaatttgggtaatttgagagaaatttttg 18411963  T
Q  191 agattttagatgtgaaatgaggaaatga 218  Q
    |||||||||||| |||||||||||||||    
T  18411962 agattttagatgggaaatgaggaaatga 18411935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 91 - 189
Target Start/End: Complemental strand, 17210738 - 17210640
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagttttta 189  Q
    ||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||| | | |||||||| || |||||    
T  17210738 gttaatggtgtttgattatgaaaacttacttgttattggagtgttgtttgatttgaacttgaagaaattttggatttgggtaatttgagagagatttta 17210640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 93 - 219
Target Start/End: Complemental strand, 31323783 - 31323658
Alignment:
Q  93 taatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaaag 192  Q
    ||||||||| | ||||||||||||||||||||| ||||| ||||||||||||||| |||||| ||||  |||||| | ||| |||||| || ||||  ||    
T  31323783 taatggtgtttgattatgaaaacttacttgttaatggagtgttgtttgatttgaatttgaaggaattttggatttgggtga-ttgagagagattttggag 31323685  T
Q  193 attttagatgtgaaatgaggaaatgag 219  Q
    |||||||||| ||||||||||||||||    
T  31323684 attttagatgagaaatgaggaaatgag 31323658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 91 - 224
Target Start/End: Original strand, 14331456 - 14331589
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaa 190  Q
    ||||||||||| | || |||||||||||||||||||||||| ||||||||||||| || ||||| ||||   |||||   |||||||||| || ||||      
T  14331456 gttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttggacctgaaggaattttagatttgagtgatttgagagagatttttg 14331555  T
Q  191 agattttagatgtgaaatgaggaaatgagttgtt 224  Q
    |||||||||||| |||||||||||||||| ||||    
T  14331556 agattttagatgagaaatgaggaaatgaggtgtt 14331589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 91 - 224
Target Start/End: Complemental strand, 24606205 - 24606072
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaa 190  Q
    |||||| |||| | ||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||  ||||||   ||||| |||| || ||||      
T  24606205 gttaattgtgtttgattatgaaaacttacttgttattagagtgttgtttgatttgaacttgaaggaattttggatttgagtgattagagatagatttttg 24606106  T
Q  191 agattttagatgtgaaatgaggaaatgagttgtt 224  Q
    |||||||| ||| |||||||||||||||| ||||    
T  24606105 agattttatatgagaaatgaggaaatgaggtgtt 24606072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 91 - 197
Target Start/End: Complemental strand, 21711009 - 21710903
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaa 190  Q
    ||||||||||| | || |||||||||||||||||||||||| |||||||||||||||||||||| ||||  |||||| | |||||||||| || ||||      
T  21711009 gttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaacttgaaggaattttggatttggatgatttgagagagatttttg 21710910  T
Q  191 agatttt 197  Q
    |||||||    
T  21710909 agatttt 21710903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 91 - 180
Target Start/End: Complemental strand, 27759103 - 27759014
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgaga 180  Q
    ||||||||||| | || |||||||||||||||||||||||| |||||||||||||||||||||| ||||  |||||| | ||||||||||    
T  27759103 gttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaacttgaaggaattttggatttggatgatttgaga 27759014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 91 - 178
Target Start/End: Original strand, 31825611 - 31825698
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttga 178  Q
    ||||||||||| | || |||||||||||||||||||||||| |||||||||||||||||||||| ||||  |||||| | ||||||||    
T  31825611 gttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaacttgaaggaattttggatttgggtgatttga 31825698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 31825365 - 31825433
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaatt 159  Q
    ||||||||||| | || |||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  31825365 gttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaacttgaaggaatt 31825433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 92 - 215
Target Start/End: Complemental strand, 13865863 - 13865740
Alignment:
Q  92 ttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaaa 191  Q
    |||||||||| | ||||||||||||||||||||| ||||| | |||||||||| ||||||||| ||||  |||||| | |||||| ||| |  ||||  |    
T  13865863 ttaatggtgtttgattatgaaaacttacttgttaatggagtgatgtttgattttaacttgaaggaattttggatttgggtgatttaagagacattttgga 13865764  T
Q  192 gattttagatgtgaaatgaggaaa 215  Q
    ||||||||||| ||| ||||||||    
T  13865763 gattttagatgagaagtgaggaaa 13865740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 109 - 207
Target Start/End: Complemental strand, 44099917 - 44099821
Alignment:
Q  109 tgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaaagattttagatgtgaaa 207  Q
    ||||||||||||||||||||||| |||||||||||||||   ||| |||||   ||||| | |||||||||| |||||||| |||||||||||||||||    
T  44099917 tgaaaacttacttgttattggagtgttgtttgatttgaa--agaaaaaattgaagatttggatgatttgagagagtttttagagattttagatgtgaaa 44099821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 105 - 159
Target Start/End: Original strand, 39039512 - 39039566
Alignment:
Q  105 attatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaatt 159  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  39039512 attatgaaaacttacttgttattggagtgttggttgatttgaacttgaagaaatt 39039566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 91 - 176
Target Start/End: Complemental strand, 49063434 - 49063349
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgattt 176  Q
    ||||||||||| | || |||||||||||||||||||||||  |||||||||||||||||||||| ||||  |||||| | ||||||    
T  49063434 gttaatggtgtttgatcatgaaaacttacttgttattggaatgttgtttgatttgaacttgaaggaattttggatttgggtgattt 49063349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 105 - 212
Target Start/End: Original strand, 23125303 - 23125409
Alignment:
Q  105 attatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaaagattttagatgtg 204  Q
    ||||||||||||||||||||||| ||| ||||||||||||||| |||||| ||||  | |||| | |||||||||| ||  ||| | ||||||||||| |    
T  23125303 attatgaaaacttacttgttattagagtgttgtttgatttgaagttgaaggaattttgaatttgggtgatttgagagag-atttgaggattttagatggg 23125401  T
Q  205 aaatgagg 212  Q
    ||||||||    
T  23125402 aaatgagg 23125409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 91 - 219
Target Start/End: Original strand, 20779690 - 20779826
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgttt-------gatttgaacttgaagaaattagggatttagttgatttgagaaag 183  Q
    ||||||||||| | |||||||||||||||||||||||| || |||||||       ||||| ||||||||| ||||  |||||| | |||||||| | ||    
T  20779690 gttaatggtgtttgattatgaaaacttacttgttattgaagtgttgtttgatttaagatttaaacttgaaggaattttggatttgggtgatttgaaagag 20779789  T
Q  184 -tttttaaagattttagatgtgaaatgaggaaatgag 219  Q
     |||||  |||||||||||| ||||||||||||||||    
T  20779790 attttttgagattttagatgagaaatgaggaaatgag 20779826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 105 - 154
Target Start/End: Original strand, 32938631 - 32938680
Alignment:
Q  105 attatgaaaacttacttgttattggagcgttgtttgatttgaacttgaag 154  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  32938631 attatgaaaacttacttgtgattggagtgttgtttgatttgaacttgaag 32938680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 12587205 - 12587152
Alignment:
Q  105 attatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaat 158  Q
    |||||||||||||||||||||||| || | ||| ||||||||| ||||||||||    
T  12587205 attatgaaaacttacttgttattgaagtggtgtctgatttgaatttgaagaaat 12587152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 128
Target Start/End: Original strand, 20759755 - 20759792
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattg 128  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  20759755 gttaatggtgtttgattatgaaaacttacttgttattg 20759792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 128
Target Start/End: Original strand, 20766146 - 20766183
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattg 128  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  20766146 gttaatggtgtttgattatgaaaacttacttgttattg 20766183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 91 - 240
Target Start/End: Original strand, 48707533 - 48707681
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaa 190  Q
    ||||||||||| | ||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||  |||||| |||||||||||| || ||||      
T  48707533 gttaatggtgtttgattatgaaaacttacttgttattggagtgttgtttgatttaaacttgaaggaatttcggatttggttgatttgagagagattttgt 48707632  T
Q  191 agattttagatgtgaaatgaggaaatgagttgttgtctgatctttaaaag 240  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  48707633 agattttagatgtgaaa-gaggaaatgagttgttgtctaatctttaaaag 48707681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 91 - 256
Target Start/End: Complemental strand, 15471149 - 15470984
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaa 190  Q
    ||||||||||| | ||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||  |||||| | |||||||||| |  ||||      
T  15471149 gttaatggtgtttgattatgaaaacttacttgttattggagtgttgtttgctttgaacttgaaggaattttggatttgggtgatttgagagaaattttgg 15471050  T
Q  191 agattttagatgtgaaatgaggaaatgagttgttgtctgatctttaaaagaatacgcaacgtgagt 256  Q
    |||||||||||| |||||||||||||||| |  ||||||| ||||||||| |||||||||||||||    
T  15471049 agattttagatgggaaatgaggaaatgagcttatgtctgagctttaaaaggatacgcaacgtgagt 15470984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 91 - 256
Target Start/End: Original strand, 21760992 - 21761156
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaa 190  Q
    ||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||  |||||| | |||||||||| | |||||      
T  21760992 gttaatggtgtttgattatgaaaacttacttgttattggagtgttgtttgatttgaacttgaaggaattttggatttgggtgatttgagagaatttttgg 21761091  T
Q  191 agattttagatgtgaaatgaggaaatgagttgttgtctgatctttaaaagaatacgcaacgtgagt 256  Q
    |||||| ||||| ||||||||||||||||||| ||| ||| ||||||||| | |||||| ||||||    
T  21761092 agatttgagatgagaaatgaggaaatgagttgctgt-tgagctttaaaaggacacgcaatgtgagt 21761156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 105 - 221
Target Start/End: Original strand, 25804195 - 25804311
Alignment:
Q  105 attatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaaagattttagatgtg 204  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||| |||||| ||||||  ||||||||||| |||||||| ||||||||||||||    
T  25804195 attatgaaaacttatttgttattggagtgttgtttgatttgaacttgaaaaaattaaggatttgattgatttgagagagtttttagagattttagatgtg 25804294  T
Q  205 aaatgaggaaatgagtt 221  Q
    |||||||||| ||||||    
T  25804295 aaatgaggaattgagtt 25804311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 91 - 219
Target Start/End: Original strand, 48569167 - 48569295
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaa 190  Q
    ||||||| ||| | || |||||||||||||||||||||||  |||||||||||||||||||||| ||||  |||||| | |||||||||| || ||||      
T  48569167 gttaatgatgtttgatcatgaaaacttacttgttattggaatgttgtttgatttgaacttgaaggaattttggattttggtgatttgagagagatttttg 48569266  T
Q  191 agattttagatgtgaaatgaggaaatgag 219  Q
    |||||||||||| ||||||||||||||||    
T  48569267 agattttagatgagaaatgaggaaatgag 48569295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 91 - 256
Target Start/End: Complemental strand, 26088930 - 26088768
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaa 190  Q
    ||||||||||| | |||||||||| |||||||||||||| | ||||||||||||||| |||||| ||||  |||||| | |||||||||| || ||||      
T  26088930 gttaatggtgtttgattatgaaaatttacttgttattggtgtgttgtttgatttgaagttgaagtaattttggatttgggtgatttgagagagattttgg 26088831  T
Q  191 agattttagatgtgaaatgaggaaatgagttgttgtctgatctttaaaagaatacgcaacgtgagt 256  Q
    |||   |||||| |||||||| ||||||| |  ||||||| ||||||||| | ||||| |||||||    
T  26088830 aga---tagatgagaaatgagaaaatgaggttatgtctgacctttaaaaggacacgcagcgtgagt 26088768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 91 - 176
Target Start/End: Original strand, 21485388 - 21485473
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgattt 176  Q
    ||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||  |||||| | ||||||    
T  21485388 gttaatggtgtttgattatgaaaacttacttgttattggagtgttgtttgatttgaacttgaaggaattttggatttgggtgattt 21485473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 91 - 178
Target Start/End: Original strand, 39224962 - 39225049
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttga 178  Q
    ||||||||||| | || |||||||||||||||||||||||| |||||||||||||||||||||| ||||  |||||| | ||||||||    
T  39224962 gttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaacttgaaggaattttggatttgggtgatttga 39225049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 90 - 180
Target Start/End: Complemental strand, 3658113 - 3658023
Alignment:
Q  90 tgttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgaga 180  Q
    |||||||| ||| | || |||||||||||||||||||||||| |||||||||||||||||||||| ||||  |||||| | ||||||||||    
T  3658113 tgttaatgatgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaacttgaaggaattttggatttgggtgatttgaga 3658023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 91 - 212
Target Start/End: Complemental strand, 5764656 - 5764535
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaa 190  Q
    ||||||||||| | ||||||||||||||||||||||||||  ||||| |||||||||||||||  ||||  | |||| | |||||||||| || ||||      
T  5764656 gttaatggtgtttgattatgaaaacttacttgttattggattgttgtgtgatttgaacttgaatgaattttgaattttggtgatttgagagaggtttttg 5764557  T
Q  191 agattttagatgtgaaatgagg 212  Q
    |||||||||||  |||||||||    
T  5764556 agattttagataagaaatgagg 5764535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 105 - 210
Target Start/End: Complemental strand, 12025750 - 12025646
Alignment:
Q  105 attatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaaagattttagatgtg 204  Q
    ||||| |||| |||| ||||||||| | |||| ||||||||||||||| |||||| ||| ||| | |||||||||| |||||||| ||||||||||||||    
T  12025750 attataaaaaattacgtgttattggggtgttggttgatttgaacttgatgaaattgggg-tttggatgatttgagagagtttttagagattttagatgtg 12025652  T
Q  205 aaatga 210  Q
    ||||||    
T  12025651 aaatga 12025646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 91 - 212
Target Start/End: Complemental strand, 18169479 - 18169358
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaa 190  Q
    ||||| ||||| | || ||||||||||||||||||||||||  ||||||||||||||| ||||| ||||  |||||| | |||||||||| || ||||      
T  18169479 gttaagggtgtttgatcatgaaaacttacttgttattggagtattgtttgatttgaacatgaaggaattttggatttgggtgatttgagagagatttttg 18169380  T
Q  191 agattttagatgtgaaatgagg 212  Q
    |||||||| ||| |||||||||    
T  18169379 agattttatatgagaaatgagg 18169358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 105 - 210
Target Start/End: Complemental strand, 27799196 - 27799091
Alignment:
Q  105 attatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaaagattttagatgtg 204  Q
    |||||||||||||||||||||||| || |||| |||||||||||||||| |||||  || ||| | |||||| ||| || ||||| |||||||||||||     
T  27799196 attatgaaaacttacttgttattgaagtgttggttgatttgaacttgaaaaaattgaggttttggatgatttaagagagattttagagattttagatgtc 27799097  T
Q  205 aaatga 210  Q
    ||||||    
T  27799096 aaatga 27799091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 91 - 254
Target Start/End: Complemental strand, 27259516 - 27259346
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaa 190  Q
    ||||||| ||| | |||||||||||||| |||||| |||||  ||||||||||| ||||||||  ||||  |||||| ||||||| | || || ||||      
T  27259516 gttaatgttgtttgattatgaaaacttagttgttactggagtattgtttgattttaacttgaaagaattttggatttggttgattagggagagattttgg 27259417  T
Q  191 agattttagatgt-------gaaatgaggaaatgagttgttgtctgatctttaaaagaatacgcaacgtga 254  Q
    |||||||||||||       |||||||  |||||||||| ||||||||||||||||| | |||||||||||    
T  27259416 agattttagatgtgaaagaggaaatgaaaaaatgagttgatgtctgatctttaaaaggacacgcaacgtga 27259346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 49599611 - 49599679
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaatt 159  Q
    ||||||||| | | ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  49599611 gttaatggtctttgattatgaaaacttacttgttattggagtgttgtttgatttgaacttgaaggaatt 49599679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 105 - 159
Target Start/End: Complemental strand, 34335780 - 34335726
Alignment:
Q  105 attatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaatt 159  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  34335780 attatgaaaacttacttgttattggagtgttggttgatttgaacttgaagaaatt 34335726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 41875640 - 41875708
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaatt 159  Q
    ||||||| ||| | || |||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  41875640 gttaatgatgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaacttgaaggaatt 41875708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 219
Target Start/End: Original strand, 46182307 - 46182436
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaag-ttttta 189  Q
    ||||||||||| | || ||||||||||| ||||||  |||  |||||||||||||| ||||||| ||||  | |||| | |||||||||| || |||||     
T  46182307 gttaatggtgtttgatcatgaaaacttatttgttaccggactgttgtttgatttgagcttgaaggaattttgaatttgggtgatttgagagagatttttt 46182406  T
Q  190 aagattttagatgtgaaatgaggaaatgag 219  Q
     |||||||||||  |||||||| |||||||    
T  46182407 gagattttagataagaaatgagaaaatgag 46182436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 18841902 - 18841834
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaatt 159  Q
    ||||||||||| | |||||||||||||  |||||||||| | |||||||||||| ||||||||| ||||    
T  18841902 gttaatggtgtttgattatgaaaacttttttgttattggtgtgttgtttgatttaaacttgaaggaatt 18841834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 256
Target Start/End: Original strand, 22923467 - 22923577
Alignment:
Q  146 aacttgaagaaattagggatttagttgatttgagaaagtttttaaagattttagatgtgaaatgaggaaatgagttgttgtctgatctttaaaagaatac 245  Q
    ||||||||| ||||  ||||||   |||||||||| || ||||  || ||||||||| |||||||| |||| || | |||||||| ||||||||| | ||    
T  22923467 aacttgaaggaattttggatttgagtgatttgagagagatttttgaggttttagatgggaaatgagaaaatcagcttttgtctgaactttaaaaggacac 22923566  T
Q  246 gcaacgtgagt 256  Q
    |||||||||||    
T  22923567 gcaacgtgagt 22923577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 8e-36; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 91 - 215
Target Start/End: Original strand, 8726971 - 8727095
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaa 190  Q
    ||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||| | |||||||||| || ||||      
T  8726971 gttaatggtgtttgattatgaaaacttacttgttattggagtgttgtttgatttgaacttgaagaaattttggatttgggtgatttgagagagatttttg 8727070  T
Q  191 agattttagatgtgaaatgaggaaa 215  Q
    |||||||||||| ||||||||||||    
T  8727071 agattttagatgagaaatgaggaaa 8727095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 90 - 224
Target Start/End: Original strand, 39477795 - 39477929
Alignment:
Q  90 tgttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagttttta 189  Q
    |||||||| ||| | || |||||||||||||||||||||||| |||||||||||||||||||||| ||||  |||||| | |||||||||| || ||||     
T  39477795 tgttaatgatgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaacttgaaggaattttggatttgggtgatttgagagagattttt 39477894  T
Q  190 aagattttagatgtgaaatgaggaaatgagttgtt 224  Q
     |||||||||||| |||||||||||||||| ||||    
T  39477895 gagattttagatgagaaatgaggaaatgaggtgtt 39477929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 91 - 240
Target Start/End: Complemental strand, 31266991 - 31266841
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaa 190  Q
    ||||||||||| | ||||||||||||||| | ||||||||| |||||||||||||||||||||||||||  |||||| | |||||||||| || ||||      
T  31266991 gttaatggtgtttgattatgaaaacttaccttttattggagtgttgtttgatttgaacttgaagaaattttggatttgggtgatttgagagagattttgg 31266892  T
Q  191 agatttt-agatgtgaaatgaggaaatgagttgttgtctgatctttaaaag 240  Q
    ||||||| ||||| |||||||||||||||  | ||||||||  ||||||||    
T  31266891 agattttcagatgggaaatgaggaaatgaagttttgtctgacttttaaaag 31266841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 94 - 210
Target Start/End: Original strand, 7414627 - 7414743
Alignment:
Q  94 aatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaaaga 193  Q
    |||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||  | |||| | ||||||||||||| ||||  |||    
T  7414627 aatggtgtttgattatgaaaacttacttgttattggagtgttgtttgatttgaacttgaaggaattttgaatttgggtgatttgagaaagatttttgaga 7414726  T
Q  194 ttttagatgtgaaatga 210  Q
    ||||||||| |||||||    
T  7414727 ttttagatgggaaatga 7414743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 91 - 211
Target Start/End: Original strand, 27318453 - 27318573
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaa 190  Q
    ||||||| ||| ||||||||||||||||||||||||||||| ||| || ||||| |||||||||||||||||||||| ||| || ||||| |||||||      
T  27318453 gttaatgatgttttattatgaaaacttacttgttattggagtgttcttggatttcaacttgaagaaattagggatttggtttatctgagagagtttttgg 27318552  T
Q  191 agattttagatgtgaaatgag 211  Q
    |||||| ||||| ||||||||    
T  27318553 agatttgagatgagaaatgag 27318573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 91 - 215
Target Start/End: Complemental strand, 18237025 - 18236902
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaa 190  Q
    ||||||||||| | || |||||||||||||||||||||||| ||||||||||||||| |||||| ||||  | |||| | |||||||||| |||||||      
T  18237025 gttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaatttgaaggaattttgaatttgggtgatttgagagagttttt-g 18236927  T
Q  191 agattttagatgtgaaatgaggaaa 215  Q
    |||||||||||| ||||||| ||||    
T  18236926 agattttagatgagaaatgaagaaa 18236902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 219
Target Start/End: Complemental strand, 28065873 - 28065746
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaa 190  Q
    ||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||  ||||||   | |||||||| || |||| |    
T  28065873 gttaatggtgtttgattatgaaaacttacttgttattggagtgttgtttgatttgaagttgaaggaatttcggatttgaattatttgagagagatttt-a 28065775  T
Q  191 agattttagatgtgaaatgaggaaatgag 219  Q
     ||||||| ||| ||||||| ||||||||    
T  28065774 ggattttatatgggaaatgaagaaatgag 28065746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 91 - 219
Target Start/End: Complemental strand, 12082515 - 12082388
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaa 190  Q
    |||||||||||   ||||||||||||||||||||||||||| |||||||||||| || |||| | ||||  |||||| | |||||| ||| || |||| |    
T  12082515 gttaatggtgttggattatgaaaacttacttgttattggagtgttgtttgatttaaagttgatggaatttcggattttggtgatttaagagagatttt-a 12082417  T
Q  191 agattttagatgtgaaatgaggaaatgag 219  Q
     ||||||||||| ||| ||||||||||||    
T  12082416 ggattttagatgggaagtgaggaaatgag 12082388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 92 - 253
Target Start/End: Original strand, 16887077 - 16887230
Alignment:
Q  92 ttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaaa 191  Q
    |||||||||| | |||||||||||||||||||||||| || | ||||| | |||||||| ||||||||| |||||| ||| ||||  || |||||||  |    
T  16887077 ttaatggtgtttgattatgaaaacttacttgttattgaagtgctgtttaaattgaacttaaagaaattaaggatttggtttatttatgagagtttttgga 16887176  T
Q  192 gattttagatgtgaaatgaggaaatgagttgttgtctgatctttaaaagaatacgcaacgtg 253  Q
    |||  |||||||        ||||||||||| ||||| ||||||||||| ||||||||||||    
T  16887177 gataatagatgt--------gaaatgagttgctgtctaatctttaaaaggatacgcaacgtg 16887230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 91 - 224
Target Start/End: Original strand, 21615512 - 21615635
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaa 190  Q
    ||||||||||| | |||||||||||||||||||||||| || ||||||||||||||||||           |||||| | |||||||||| || ||||      
T  21615512 gttaatggtgtttgattatgaaaacttacttgttattgaagtgttgtttgatttgaactt----------tggatttgggtgatttgagagagatttttg 21615601  T
Q  191 agattttagatgtgaaatgaggaaatgagttgtt 224  Q
    |||||||||||| |||||||||||||||| ||||    
T  21615602 agattttagatgagaaatgaggaaatgaggtgtt 21615635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 91 - 144
Target Start/End: Complemental strand, 18146407 - 18146354
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgattt 144  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  18146407 gttaatggtgtatgattatgaaaacttacttgttattggagtgttgtttgattt 18146354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 92 - 197
Target Start/End: Complemental strand, 13798774 - 13798669
Alignment:
Q  92 ttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaaa 191  Q
    |||||||||| | ||||||||| |||||||||||||  || ||||||||||||||| |||||| ||||  |||||| | |||||||||| || ||||  |    
T  13798774 ttaatggtgtttgattatgaaagcttacttgttattatagtgttgtttgatttgaatttgaaggaattttggatttggatgatttgagagagatttttga 13798675  T
Q  192 gatttt 197  Q
    ||||||    
T  13798674 gatttt 13798669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 178
Target Start/End: Complemental strand, 40592167 - 40592102
Alignment:
Q  113 aacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttga 178  Q
    |||||||||||||||| || |||||||||||||||||||||| ||||  |||||| | ||||||||    
T  40592167 aacttacttgttattgaagtgttgtttgatttgaacttgaaggaattttggatttgggtgatttga 40592102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 154
Target Start/End: Complemental strand, 11823935 - 11823872
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaag 154  Q
    ||||||| ||| | ||||||||| ||||||| ||||||||| ||||||||||||||| ||||||    
T  11823935 gttaatgatgtttgattatgaaagcttacttattattggagtgttgtttgatttgaagttgaag 11823872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 240
Target Start/End: Original strand, 41935899 - 41935935
Alignment:
Q  204 gaaatgaggaaatgagttgttgtctgatctttaaaag 240  Q
    ||||| |||||||||||||||||||||||||||||||    
T  41935899 gaaataaggaaatgagttgttgtctgatctttaaaag 41935935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 91 - 256
Target Start/End: Original strand, 15798709 - 15798873
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaa 190  Q
    ||||||||||| | ||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||  |||||| | |||||||||| || ||||      
T  15798709 gttaatggtgtttcattatgaaaacttacttgttattggagtgttgtttgatttaaacttgaaggaattttggatttgggtgatttgagagagattttgg 15798808  T
Q  191 agattttagatgtgaaatgaggaaatgagttgttgtctgatctttaaaagaatacgcaacgtgagt 256  Q
    |||||||||||| ||||||||||||| || |  ||||||  |||||||| || |||||||||||||    
T  15798809 agattttagatgggaaatgaggaaataaggttatgtctg-cctttaaaataacacgcaacgtgagt 15798873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 91 - 250
Target Start/End: Complemental strand, 10975406 - 10975248
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaa 190  Q
    ||||||| ||| | ||| |||||||||||||||||||||||  |||| |||||||||||||||| ||||  |||||| |||||||||||| |  ||||      
T  10975406 gttaatgatgtttgattttgaaaacttacttgttattggagtattgtgtgatttgaacttgaaggaattttggatttggttgatttgagagaaattttgg 10975307  T
Q  191 agattttagatgtgaaatgaggaaatgagttgttgtctgatctttaaaagaatacgcaac 250  Q
    |||||||||| |||||| |||||||||||||| |||||||| |||||||| | |||||||    
T  10975306 agattttagaagtgaaa-gaggaaatgagttgctgtctgatttttaaaaggacacgcaac 10975248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 91 - 218
Target Start/End: Complemental strand, 28717664 - 28717537
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaa 190  Q
    ||||||| ||| | |||||||||||||||||| |||||||| |||||| |||||||| |||||||||||||| |||| |||||||||||| |||||||      
T  28717664 gttaatgatgtttgattatgaaaacttacttgctattggagtgttgttggatttgaaattgaagaaattaggaatttggttgatttgagagagtttttgg 28717565  T
Q  191 agattttagatgtgaaatgaggaaatga 218  Q
    | |||| ||||| |||||||||||||||    
T  28717564 atatttgagatgagaaatgaggaaatga 28717537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 92 - 229
Target Start/End: Complemental strand, 2598805 - 2598668
Alignment:
Q  92 ttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaaa 191  Q
    |||||||||| | ||||||||||||||||||||| ||||| |||||||||||||||||| ||| ||||  |||||| | |||||||| | || ||||  |    
T  2598805 ttaatggtgtttgattatgaaaacttacttgttaatggagtgttgtttgatttgaactttaaggaattttggatttgggtgatttgaaagagattttgga 2598706  T
Q  192 gattttagatgtgaaatgaggaaatgagttgttgtctg 229  Q
    |||||||||||  ||||||||||||||| | |||||||    
T  2598705 gattttagatgaaaaatgaggaaatgagattttgtctg 2598668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 91 - 219
Target Start/End: Original strand, 4113845 - 4113973
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaa 190  Q
    ||||||||||| | |||||||||| |||||||||||||||| |||||||||||||||||||||| ||||   ||||| | ||| |||||| |  ||||      
T  4113845 gttaatggtgtttgattatgaaaatttacttgttattggagtgttgtttgatttgaacttgaaggaattttagatttgggtgacttgagagatatttttg 4113944  T
Q  191 agattttagatgtgaaatgaggaaatgag 219  Q
    |||||||||||| ||||||||||||||||    
T  4113945 agattttagatgagaaatgaggaaatgag 4113973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 91 - 197
Target Start/End: Complemental strand, 7081745 - 7081639
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaa 190  Q
    ||||||||||| | || |||||||||||||||||||||||| |||||||||||||||||||||| ||||  |||||| | |||||||||| || ||||      
T  7081745 gttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaacttgaaggaattttggatttggatgatttgagagagatttttg 7081646  T
Q  191 agatttt 197  Q
    |||||||    
T  7081645 agatttt 7081639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 219
Target Start/End: Original strand, 25361210 - 25361336
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaa 190  Q
    ||||||||||| | ||||||||||||||||||||||||||| |||||| |||||||| |||||| ||||  |||||| | |||||||||| || |||| |    
T  25361210 gttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaatttgaaggaatttaggattttgatgatttgagagagatttt-a 25361308  T
Q  191 agattttagatgtgaaatgaggaaatgag 219  Q
     ||||||| ||| |||||| |||||||||    
T  25361309 ggattttaaatgggaaatg-ggaaatgag 25361336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 112 - 210
Target Start/End: Original strand, 16418737 - 16418835
Alignment:
Q  112 aaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaaagattttagatgtgaaatga 210  Q
    |||||||||||||||| ||| |||| || |||| |||||||| |||||  |||||||| |||||| ||| ||||||||||||||||||||||| |||||    
T  16418737 aaacttacttgttattagagtgttggttaatttaaacttgaaaaaattgcggatttagatgatttaagagagtttttaaagattttagatgtgcaatga 16418835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 90 - 197
Target Start/End: Complemental strand, 33370097 - 33369990
Alignment:
Q  90 tgttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagttttta 189  Q
    |||||||||||| | ||||||||||||||  |||||||| || |||||||||||||||||||||| ||||  |||||| | |||||||||| || ||||     
T  33370097 tgttaatggtgtttgattatgaaaacttagatgttattgaagtgttgtttgatttgaacttgaaggaattttggatttgggtgatttgagagagattttt 33369998  T
Q  190 aagatttt 197  Q
     |||||||    
T  33369997 gagatttt 33369990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 91 - 154
Target Start/End: Original strand, 36317665 - 36317728
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaag 154  Q
    ||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  36317665 gttaatggtgtttgattatgaaaacttacttgttattggagtgttgtttgatttgaagttgaag 36317728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 91 - 224
Target Start/End: Complemental strand, 12805018 - 12804885
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaa 190  Q
    ||||||| ||| | ||||||||||||||||||||| | ||| ||||||||||||||| |||||| ||||  | |||||| ||||||||||  | ||||      
T  12805018 gttaatgatgtttgattatgaaaacttacttgttactcgagtgttgtttgatttgaatttgaaggaattttgaatttaggtgatttgagagggatttttg 12804919  T
Q  191 agattttagatgtgaaatgaggaaatgagttgtt 224  Q
     |||||| |||  |||||||||||||||| ||||    
T  12804918 tgatttttgataagaaatgaggaaatgaggtgtt 12804885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 23229359 - 23229427
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaatt 159  Q
    ||||||||||| | |||||||||||||||||||| || ||| |||||||||||||||||||||| ||||    
T  23229359 gttaatggtgtttgattatgaaaacttacttgtttttagagtgttgtttgatttgaacttgaagtaatt 23229427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 224
Target Start/End: Complemental strand, 12742199 - 12742070
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaa 190  Q
    ||||||||||| | |||||||||||||    |||| | ||| |||||||||||||||||||||| ||||  | |||||| ||||||||||  | ||||      
T  12742199 gttaatggtgtttgattatgaaaactt----gttactcgagtgttgtttgatttgaacttgaaggaattttgaatttaggtgatttgagagggatttttg 12742104  T
Q  191 agattttagatgtgaaatgaggaaatgagttgtt 224  Q
     |||||| |||  |||||||||||||||| ||||    
T  12742103 tgatttttgataagaaatgaggaaatgaggtgtt 12742070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 159
Target Start/End: Original strand, 22858358 - 22858408
Alignment:
Q  109 tgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaatt 159  Q
    ||||||||||||||||||| ||| ||||||||||||||| |||||| ||||    
T  22858358 tgaaaacttacttgttattagagtgttgtttgatttgaatttgaaggaatt 22858408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 211
Target Start/End: Complemental strand, 19747650 - 19747534
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaa 190  Q
    |||||| |||| | ||||||||||||||||||  ||| ||| ||||||||| ||||| |||||| ||||   ||||||| |||||||||| || |||| |    
T  19747650 gttaatagtgtttgattatgaaaacttacttg--attagagtgttgtttga-ttgaagttgaaggaatttcagatttaggtgatttgagagagatttt-a 19747555  T
Q  191 agattttagatgtgaaatgag 211  Q
     ||||||| ||| ||||||||    
T  19747554 ggattttaaatgggaaatgag 19747534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 91 - 224
Target Start/End: Complemental strand, 7953668 - 7953534
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaag-ttttta 189  Q
    ||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||  ||||  |||||| | |||||||||| || |||||     
T  7953668 gttaatggtgtttgattatgaaaacttacttgttattggagtgttgtttgatttgaacttgaacgaattttggatttgggtgatttgagagagatttttt 7953569  T
Q  190 aagattttagatgtgaaatgaggaaatgagttgtt 224  Q
     |||||||||||| |||||||||||||||| ||||    
T  7953568 gagattttagatgagaaatgaggaaatgaggtgtt 7953534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 90 - 180
Target Start/End: Complemental strand, 13626410 - 13626320
Alignment:
Q  90 tgttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgaga 180  Q
    |||||||||||| | ||||| |||||||||||||||||| || |||||||||||||||||| |||||||||||||||| ||||||||||||    
T  13626410 tgttaatggtgtttgattataaaaacttacttgttattgaagtgttgtttgatttgaactttaagaaattagggatttggttgatttgaga 13626320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 90 - 214
Target Start/End: Complemental strand, 17370398 - 17370275
Alignment:
Q  90 tgttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagttttta 189  Q
    |||||||||||| | ||||||||||||||||||||||||||| |||| ||||||||||||| |||||||| ||  ||| | |||||||||| ||||||||    
T  17370398 tgttaatggtgtttgattatgaaaacttacttgttattggagtgttgattgatttgaacttaaagaaatt-ggagtttggatgatttgagagagttttta 17370300  T
Q  190 aagattttagatgtgaaatgaggaa 214  Q
     ||||||  |||| |||||||||||    
T  17370299 gagatttaggatgagaaatgaggaa 17370275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 92 - 219
Target Start/End: Complemental strand, 14265009 - 14264882
Alignment:
Q  92 ttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaaa 191  Q
    |||| ||||| | ||||||||||||||||||||| ||||| |||||| ||||||||||||||| ||||   ||||| | |||||||||| || ||||  |    
T  14265009 ttaacggtgtttgattatgaaaacttacttgttaatggagtgttgttagatttgaacttgaaggaatttttgatttgggtgatttgagagagattttgga 14264910  T
Q  192 gattttagatgtgaaatgaggaaatgag 219  Q
    ||||||||||| ||||||||||||||||    
T  14264909 gattttagatgagaaatgaggaaatgag 14264882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 105 - 240
Target Start/End: Original strand, 1639235 - 1639367
Alignment:
Q  105 attatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaaagattttagatgtg 204  Q
    ||||||| ||||||||||||||||||| |||||| |||||||| ||||||||| || |||||| ||| |||||||  |||||||  |||||| ||||| |    
T  1639235 attatgataacttacttgttattggagtgttgttggatttgaatttgaagaaaataaggattt-gttaatttgag--agtttttggagatttgagatgag 1639331  T
Q  205 aaatgaggaaatgagttgttgtctgatctttaaaag 240  Q
    ||||||| ||||||| || ||||||| |||||||||    
T  1639332 aaatgagaaaatgagctgctgtctgacctttaaaag 1639367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 91 - 219
Target Start/End: Original strand, 48088308 - 48088436
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaa 190  Q
    ||||||||||| | || |||||||||||||||||||||||| ||||||| |||||||||||||| ||||  | ||||   |||||||||| || ||||      
T  48088308 gttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttaatttgaacttgaaggaattttgaatttgagtgatttgagagagatttttg 48088407  T
Q  191 agattttagatgtgaaatgaggaaatgag 219  Q
    |||||||||||| ||||||| ||||||||    
T  48088408 agattttagatgagaaatgatgaaatgag 48088436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 90 - 208
Target Start/End: Original strand, 36722110 - 36722228
Alignment:
Q  90 tgttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagttttta 189  Q
    |||||||||||| | || |||||||||||||||||||||||| ||||||||||| |||||||||  ||||  |||||| | |||||||| | || ||||     
T  36722110 tgttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgattcgaacttgaatgaattttggatttgggtgatttgaaagagattttt 36722209  T
Q  190 aagattttagatgtgaaat 208  Q
     ||||||||||||||||||    
T  36722210 gagattttagatgtgaaat 36722228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 91 - 197
Target Start/End: Complemental strand, 37280919 - 37280813
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaa 190  Q
    ||||||||||| | || |||||||||||||||||||||||| |||||||||||||||||||||| ||||  |||||| | |||||||||| || ||||      
T  37280919 gttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaacttgaaggaattttggatttgggtgatttgagagagatttttg 37280820  T
Q  191 agatttt 197  Q
    |||||||    
T  37280819 agatttt 37280813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 210
Target Start/End: Complemental strand, 53561353 - 53561233
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaag-ttttta 189  Q
    ||||||| ||| | || ||||||||| |||||||||||||| |||||||||||||||||||||| ||||  |||||| | |||||||||| || |||||     
T  53561353 gttaatgatgtttgatcatgaaaactcacttgttattggagtgttgtttgatttgaacttgaaggaattttggatttgggtgatttgagagagatttttt 53561254  T
Q  190 aagattttagatgtgaaatga 210  Q
     |||||||||||| |||||||    
T  53561253 gagattttagatgagaaatga 53561233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 105 - 212
Target Start/End: Original strand, 8634163 - 8634270
Alignment:
Q  105 attatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaaagattttagatgtg 204  Q
    ||||||||||||||||||| |||| || |||||||||||||||||||||||| ||  || ||| | |||||||||| || ||||  |||||||||||| |    
T  8634163 attatgaaaacttacttgtgattgaagtgttgtttgatttgaacttgaagaatttttgggtttgggtgatttgagagagatttttgagattttagatgag 8634262  T
Q  205 aaatgagg 212  Q
    ||||||||    
T  8634263 aaatgagg 8634270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 91 - 154
Target Start/End: Original strand, 6465090 - 6465153
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaag 154  Q
    ||||||| ||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  6465090 gttaatgctgtttgattatgaaaacttacttgttattggagtgttgtttgatttgaacttgaag 6465153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 90 - 212
Target Start/End: Complemental strand, 19234652 - 19234530
Alignment:
Q  90 tgttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagttttta 189  Q
    |||||||||||| | ||||||||||||||||||||| ||||| || ||||||||||||||||||  ||||  |||||| | | |||||||| |  ||||     
T  19234652 tgttaatggtgtttgattatgaaaacttacttgttaatggagtgtggtttgatttgaacttgaaagaattttggatttgggtaatttgagagaaattttt 19234553  T
Q  190 aagattttagatgtgaaatgagg 212  Q
     |||||| ||||| |||||||||    
T  19234552 gagatttaagatgagaaatgagg 19234530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 91 - 213
Target Start/End: Original strand, 39417710 - 39417831
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaa 190  Q
    ||||||||||| | || |||||||||||||||||||||||| |||||||||||||||||| ||| ||||  | |||| | |||||||| | || ||||      
T  39417710 gttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaactt-aaggaattttgaatttgggtgatttgaaagagatttttg 39417808  T
Q  191 agattttagatgtgaaatgagga 213  Q
    |||||||||||  ||||||||||    
T  39417809 agattttagataagaaatgagga 39417831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 91 - 176
Target Start/End: Original strand, 25577342 - 25577427
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgattt 176  Q
    ||||||||||| | || ||||||||||| |||||||||||| |||||||||||||||||||||| ||||  |||||| | ||||||    
T  25577342 gttaatggtgtttgatcatgaaaacttatttgttattggagtgttgtttgatttgaacttgaaggaattttggatttgggtgattt 25577427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 240
Target Start/End: Complemental strand, 43687670 - 43687537
Alignment:
Q  116 ttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgattt--gagaaagtttttaaagattttagatgtga-------a 206  Q
    |||||| ||||||||| |||||||||||||||||||||| ||||  | |||| ||||||||  |||| || ||||  |||||||||||||||       |    
T  43687670 ttactttttattggagtgttgtttgatttgaacttgaaggaattttgaatttggttgatttgagagagagattttggagattttagatgtgaaagagtta 43687571  T
Q  207 atgaggaaatgagttgttgtctgatctttaaaag 240  Q
    ||||||||||| |||||||| |||||||||||||    
T  43687570 atgaggaaatgggttgttgtgtgatctttaaaag 43687537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 158
Target Start/End: Original strand, 29635550 - 29635603
Alignment:
Q  105 attatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaat 158  Q
    ||||| ||||||||||| ||||||||| ||||  ||||||||| ||||||||||    
T  29635550 attataaaaacttactttttattggagtgttgactgatttgaatttgaagaaat 29635603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 240
Target Start/End: Complemental strand, 13626302 - 13626266
Alignment:
Q  204 gaaatgaggaaatgagttgttgtctgatctttaaaag 240  Q
    |||||||| ||||||||||||||||||| ||||||||    
T  13626302 gaaatgagaaaatgagttgttgtctgatttttaaaag 13626266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 91 - 224
Target Start/End: Complemental strand, 40414194 - 40414061
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaa 190  Q
    ||||||||||| | || |||||||||||||||||||||||| |||||||||||||||||||||| ||||  |||||| | |||||||| | || ||||      
T  40414194 gttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaacttgaaggaattttggatttgggtgatttgaaagagatttttg 40414095  T
Q  191 agattttagatgtgaaatgaggaaatgagttgtt 224  Q
    |||||||||||| |||||||||||||||| ||||    
T  40414094 agattttagatgagaaatgaggaaatgaggtgtt 40414061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 105 - 210
Target Start/End: Original strand, 22843970 - 22844075
Alignment:
Q  105 attatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaaagattttagatgtg 204  Q
    ||||||||||||||||| ||||||||| |||| |||||||||||||||||||||| ||||||| | |||||||||| |  |||||||||||||||||| |    
T  22843970 attatgaaaacttacttattattggagtgttggttgatttgaacttgaagaaattggggatttggatgatttgagagatattttaaagattttagatgcg 22844069  T
Q  205 aaatga 210  Q
    ||||||    
T  22844070 aaatga 22844075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 91 - 180
Target Start/End: Complemental strand, 16575153 - 16575064
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgaga 180  Q
    ||||||||||| | |||||||||| |||||||||||||||| |||||||||||||||||||||| ||||  | |||| | ||||||||||    
T  16575153 gttaatggtgtttgattatgaaaaattacttgttattggagtgttgtttgatttgaacttgaaggaattttgaatttgggtgatttgaga 16575064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 91 - 215
Target Start/End: Original strand, 14998731 - 14998855
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaa 190  Q
    ||||||||||| | ||||||||||||||||||||||||||| ||||||| |||| ||||||||| ||||  | | || |   |||||||| || ||||      
T  14998731 gttaatggtgtttgattatgaaaacttacttgttattggagtgttgttttattttaacttgaaggaattttgaagttggacaatttgagagagattttgg 14998830  T
Q  191 agattttagatgtgaaatgaggaaa 215  Q
    |||||||||||| ||||||||||||    
T  14998831 agattttagatgggaaatgaggaaa 14998855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 91 - 180
Target Start/End: Complemental strand, 43692601 - 43692512
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgaga 180  Q
    ||||||||||| | || |||||||||||||||||||||||| ||||||||||||||| |||||  ||||  |||||| | ||||||||||    
T  43692601 gttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaatttgaatgaattttggatttgggtgatttgaga 43692512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 159
Target Start/End: Original strand, 12785845 - 12785899
Alignment:
Q  105 attatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaatt 159  Q
    ||||||||||||||||||||||| ||| | ||  |||||||||||||| ||||||    
T  12785845 attatgaaaacttacttgttattcgagtggtgggtgatttgaacttgatgaaatt 12785899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 91 - 240
Target Start/End: Original strand, 26618095 - 26618243
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaa 190  Q
    ||||||| ||| | |||||||||||||||||| |||||||| |||||||||||||||||||||| ||||  |||||| | |||||||||| || ||||      
T  26618095 gttaatgatgtttgattatgaaaacttacttgctattggagtgttgtttgatttgaacttgaaggaattttggatttggatgatttgagagagattttgg 26618194  T
Q  191 agattttagatgtgaaatgaggaaatgagttgttgtctgatctttaaaag 240  Q
    ||||||||||||||||| ||||||||||| |  ||||||| |||||||||    
T  26618195 agattttagatgtgaaa-gaggaaatgaggttatgtctgacctttaaaag 26618243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 91 - 224
Target Start/End: Complemental strand, 32734241 - 32734108
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaa 190  Q
    ||||||||||| | || ||||||||||||||||||||||||  ||||||||||||||||||||| ||||  |||||| | |||||||||| || ||||      
T  32734241 gttaatggtgtttgatcatgaaaacttacttgttattggagtattgtttgatttgaacttgaaggaattttggatttgggtgatttgagagagatttttg 32734142  T
Q  191 agattttagatgtgaaatgaggaaatgagttgtt 224  Q
    |||||||||||| |||||||||||||||| ||||    
T  32734141 agattttagatgagaaatgaggaaatgaggtgtt 32734108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 105 - 209
Target Start/End: Complemental strand, 40500874 - 40500770
Alignment:
Q  105 attatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaaagattttagatgtg 204  Q
    |||||||||||||| |||||||| ||| |||| ||||||| |||||||||||||| ||||| | |||||||||||| |||||||||||||||||||||||    
T  40500874 attatgaaaacttaattgttatttgagtgttggttgatttaaacttgaagaaattggggatatggttgatttgagagagtttttaaagattttagatgtg 40500775  T
Q  205 aaatg 209  Q
    |||||    
T  40500774 aaatg 40500770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 90 - 214
Target Start/End: Original strand, 21557373 - 21557497
Alignment:
Q  90 tgttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagttttta 189  Q
    |||||||| ||| | ||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||  |||| | |||||||||| ||||||||    
T  21557373 tgttaatgatgtttgattatgacaacttacttgttattggagtgctgtttgatttgaacttgaagaaattagaaatttggatgatttgagagagttttta 21557472  T
Q  190 aagattttagatgtgaaatgaggaa 214  Q
    || | ||  |||| |||||||||||    
T  21557473 aatagttgggatgagaaatgaggaa 21557497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 91 - 197
Target Start/End: Complemental strand, 16706281 - 16706175
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaa 190  Q
    ||||||||||| | || |||||||||||| ||||||||||| |||||||||||||||||||||| ||||  |||||| | |||||||||| || ||||      
T  16706281 gttaatggtgtttgataatgaaaacttacgtgttattggagtgttgtttgatttgaacttgaaggaattttggatttgggtgatttgagagagatttttg 16706182  T
Q  191 agatttt 197  Q
    |||||||    
T  16706181 agatttt 16706175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 91 - 197
Target Start/End: Complemental strand, 20147576 - 20147470
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaa 190  Q
    ||||||||||| | ||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||  ||||||   |||||||||| || ||||      
T  20147576 gttaatggtgtttgattatgaaaacttacttattattggagtgttgtttgatttgaacttgaaggaattttggatttgtgtgatttgagagagatttttg 20147477  T
Q  191 agatttt 197  Q
    |||||||    
T  20147476 agatttt 20147470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 91 - 197
Target Start/End: Complemental strand, 29906038 - 29905933
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaa 190  Q
    ||||||||||| | || |||||||||||||||||||||||| |||||||||||||||||||||| ||||  |||||| | |||||||||| || ||||      
T  29906038 gttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaacttgaaggaattttggattt-ggtgatttgagagagatttttg 29905940  T
Q  191 agatttt 197  Q
    |||||||    
T  29905939 agatttt 29905933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 29110624 - 29110556
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaatt 159  Q
    ||||||||||| | |||||||||||||| |||||||||||| |||||||||||||||||||||| ||||    
T  29110624 gttaatggtgtttgattatgaaaacttatttgttattggagtgttgtttgatttgaacttgaaggaatt 29110556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 105 - 159
Target Start/End: Original strand, 5307118 - 5307172
Alignment:
Q  105 attatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaatt 159  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  5307118 attatgaaaacttacttgttattggagtgttggttgatttgaacttgaagaaatt 5307172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 91 - 197
Target Start/End: Original strand, 42241848 - 42241954
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaa 190  Q
    ||||||||||| | || ||||||||||| |||||||||||| |||||||||||||||||| ||| ||||  |||||| | |||||||||| || ||||      
T  42241848 gttaatggtgtttgatcatgaaaacttaattgttattggagtgttgtttgatttgaacttaaaggaattttggatttgggtgatttgagagagatttttg 42241947  T
Q  191 agatttt 197  Q
    |||||||    
T  42241948 agatttt 42241954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 219
Target Start/End: Complemental strand, 18878100 - 18877973
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaa 190  Q
    ||||||||||| | ||||||||||||||||||| ||||||| ||| | | ||| |||||||||| | ||  |||||| | |||||||||| |  |||||     
T  18878100 gttaatggtgtttgattatgaaaacttacttgtgattggagtgttttcttatt-gaacttgaaggagttttggatttgggtgatttgagagaaattttag 18878002  T
Q  191 agattttagatgtgaaatgaggaaatgag 219  Q
    |||||||||||| ||||||| ||||||||    
T  18878001 agattttagatgggaaatgatgaaatgag 18877973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 219
Target Start/End: Original strand, 27651407 - 27651533
Alignment:
Q  92 ttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaaa 191  Q
    |||||||| | | ||||||||||||||||| ||||||||  ||||||||||||||  ||||| |||||   ||||||| |||||| ||| | | ||| |     
T  27651407 ttaatggtatttgattatgaaaacttacttattattggaatgttgtttgatttgaggttgaataaattttagatttaggtgatttaagaga-tattttag 27651505  T
Q  192 gattttagatgtgaaatgaggaaatgag 219  Q
    ||||||| ||| |||| |||||||||||    
T  27651506 gattttatatgggaaacgaggaaatgag 27651533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 39091962 - 39092010
Alignment:
Q  111 aaaacttacttgttattggagcgttgtttgatttgaacttgaagaaatt 159  Q
    ||||||||||||||||||||| | ||| ||||||||| ||||| |||||    
T  39091962 aaaacttacttgttattggagtggtgtctgatttgaatttgaaaaaatt 39092010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0489 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0489
Description:

Target: scaffold0489; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 91 - 217
Target Start/End: Complemental strand, 7616 - 7491
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaa 190  Q
    ||||||||||| | ||| ||||||||||||||||| ||||| ||||||||||||||||||| |  ||||  ||||||||||||||||||| || ||||      
T  7616 gttaatggtgtctgattttgaaaacttacttgttactggagtgttgtttgatttgaacttgtaagaattttggatttagttgatttgagagagattttgg 7517  T
Q  191 agattttagatgtgaaatgaggaaatg 217  Q
    ||||||||||||||||| |||||||||    
T  7516 agattttagatgtgaaa-gaggaaatg 7491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 91 - 212
Target Start/End: Complemental strand, 4800 - 4680
Alignment:
Q  91 gttaatggtgtattattatgaaaacttacttgttattggagcgttgtttgatttgaacttgaagaaattagggatttagttgatttgagaaagtttttaa 190  Q
    ||||||||||| | ||||||||||||||||||||||||||| |||| |||||||||| |||||| ||||  |||| | | |||||||||| || ||||      
T  4800 gttaatggtgtttgattatgaaaacttacttgttattggagtgttg-ttgatttgaagttgaaggaattttggatctgggtgatttgagagagatttttg 4702  T
Q  191 agattttagatgtgaaatgagg 212  Q
    |||||||||||| |||||||||    
T  4701 agattttagatgggaaatgagg 4680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 147
Target Start/End: Complemental strand, 39367 - 39325
Alignment:
Q  105 attatgaaaacttacttgttattggagcgttgtttgatttgaa 147  Q
    ||||||||||||||||||| |||| || |||||||||||||||    
T  39367 attatgaaaacttacttgtgattgaagtgttgtttgatttgaa 39325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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