View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18044_low_1 (Length: 761)

Name: NF18044_low_1
Description: NF18044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18044_low_1
NF18044_low_1
[»] chr1 (13 HSPs)
chr1 (184-671)||(9070754-9071238)
chr1 (1-209)||(9299395-9299603)
chr1 (199-560)||(8862628-8862986)
chr1 (199-607)||(8866497-8866899)
chr1 (432-557)||(9087308-9087427)
chr1 (199-287)||(9087066-9087154)
chr1 (187-292)||(9126200-9126305)
chr1 (1-224)||(9258107-9258330)
chr1 (199-290)||(8980043-8980134)
chr1 (255-382)||(9108990-9109116)
chr1 (466-557)||(9126479-9126561)
chr1 (716-751)||(9071294-9071329)
chr1 (34-89)||(9467363-9467418)
[»] chr3 (1 HSPs)
chr3 (16-78)||(9170928-9170990)


Alignment Details
Target: chr1 (Bit Score: 442; Significance: 0; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 184 - 671
Target Start/End: Original strand, 9070754 - 9071238
Alignment:
Q  184 tccgaatcagcaacataaattggacaagtgatcatatcttgtgactcttgggatgtctgatattggtttctcaagtgtcgtttcctaactgaagagcagt 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  9070754 tccgaatcagcaacataaattggacaagtgatcatatcttgtgactcttgggatgtctgatattggtttctcaagtgttgtttcctaactgaaaagcagt 9070853  T
Q  284 tgaagaagaacattttgatatccggttcagaatcaaaccggtaaggttgaaatgatgaattgttgagtatcaaaaacttttttggaaggcaattgtctgg 383  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9070854 tgaagaagaagattttgatatccagttcagaatcaaaccggtaaggtcgaaatgatgaattgttgagtatcaaaaacttttttggaaggcaattgtctgg 9070953  T
Q  384 gtctgatattgacatcgagtgtgattcgtagtcaatatcagagacatggaatttgattggacctgaagaggtagagagaactatcatggttttcttattt 483  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9070954 gtctgatattgacatcgagtgtgattcgtagtcaatatcagagacatggaatttgattggacctgaagaggtagagagaactatcatggttttcttattt 9071053  T
Q  484 tcagtacaatataggcagaactctttaggataaacacattgttgatcttgtgatgattccttaacgatttggaagggaaatttaataagaggttggtcag 583  Q
    ||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  9071054 tcagtacaatataggcagaactctttaggataaacaca---ttgatcttgtgatgattccttaacgatttggaagggaaatttaataagaggttggttag 9071150  T
Q  584 gtccacaatatgattctctgcactggtcatgagcattgccacttctgataagcaagatcataagaagttgcatgatcaaagtaatatg 671  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  9071151 gtccacaatatgattctctgcactggtcatgagcattgccacttttgataagcaagatcataagaagttgcatgatcaaagtagtatg 9071238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 9299603 - 9299395
Alignment:
Q  1 aaaataatgaatgcaatccttttcattgctttgtgttcacatttcaagcatcctaagtcaaaatttgttccataccatttcaatgagagtatgtttgatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9299603 aaaataatgaatgcaatccttttcattgctttgtgttcacatttcaagcatcctaagtcaaaatttgttccataccatttcaatgagagtatgtttgatt 9299504  T
Q  101 gaatggaagatgcgtgnnnnnnngaaacgcgatcaaacagtttgatgcagtatacaagatcagattcaatgattctttcgctatccgaatcagcaacata 200  Q
    |||||||||||||| |       | |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||    
T  9299503 gaatggaagatgcgggaaataaagcaacgcgatcaaacagtttgatgcagtatacaagatcagattcaatgatactatcgctatccgaataagcaacata 9299404  T
Q  201 aattggaca 209  Q
    |||||||||    
T  9299403 aattggaca 9299395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 199 - 560
Target Start/End: Original strand, 8862628 - 8862986
Alignment:
Q  199 taaattggacaagtgatcatatcttgtgactcttgggatgtctgatattggtttctcaagtgtcgtttcctaactgaagagcagttgaag-aagaacatt 297  Q
    |||| |||||| |||||||||||||| |||||||||||||| ||||  ||||||||||||||| ||||||||||||||||||| |||||| ||||  |||    
T  8862628 taaactggacaggtgatcatatcttgcgactcttgggatgtttgatcatggtttctcaagtgttgtttcctaactgaagagcaattgaagaaagacaatt 8862727  T
Q  298 ttg--atatccggttcagaatcaaaccggtaaggttgaaatgatgaattgttgagtatcaaaaacttttttggaaggcaattgtctgggtctgatattga 395  Q
    |||   |  | ||||  | |  ||| ||||||||| |||||||||| ||||| ||| ||| ||||||||| |||| ||||||||| |||||    | |||    
T  8862728 ttgtcgttcctggttgtggaaaaaatcggtaaggtagaaatgatgagttgttaagtttcagaaactttttaggaatgcaattgtccgggtccatcactga 8862827  T
Q  396 catcgagtgtgattcgtagtcaatatcagagacatggaatttgattggacctgaagaggtagagagaactatcatggttttcttattttcagtacaatat 495  Q
     ||   || |||||||||||| || | | | ||| ||||||||||||||||||||| ||||||||| || |||||||||| ||| |||||||||||||||    
T  8862828 aattcggtttgattcgtagtctatgtaatatacacggaatttgattggacctgaagtggtagagaggaccatcatggtttccttgttttcagtacaatat 8862927  T
Q  496 aggcagaactctttaggataaacacattgttgatcttgtgatgattccttaacgatttggaaggg 560  Q
    ||||| |||||   ||||| |  |||   |||||||||||||||||||| ||| | |||||||||    
T  8862928 aggcaaaactc---aggatgagtaca---ttgatcttgtgatgattcctcaactagttggaaggg 8862986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 199 - 607
Target Start/End: Original strand, 8866497 - 8866899
Alignment:
Q  199 taaattggacaagtgatcatatcttgtgactcttgggatgtctgatattggtttctcaagtgtcgtttcctaactgaagagcagttgaagaa-gaacatt 297  Q
    ||||||||||| ||||||||||||||||||  ||| ||||  |||| || |||||||| |||||||||| ||| |||||| || |||||||| ||  |||    
T  8866497 taaattggacaggtgatcatatcttgtgaccgttgagatgattgatcttcgtttctcaggtgtcgtttcttaaatgaagaacaattgaagaaagatgatt 8866596  T
Q  298 ttgatatccggttcagaatcaaaccggtaaggttgaaatgatgaattgttgagtatcaaaaacttttttggaaggcaattgtctgggtctgatattgaca 397  Q
    ||| |||  | ||| |||| ||| ||||||||| ||||||| |  ||||| ||| ||| ||  ||||  | || ||||||||||||||| || ||||| |    
T  8866597 ttgttatt-gattctgaataaaatcggtaaggtggaaatgaggtcttgttaagtttcagaattttttccgaaatgcaattgtctgggtccgaaattgaaa 8866695  T
Q  398 tcgagtgtgattcgtagtcaatatcagagacatggaatttgattggacctgaagaggtagagagaactatcatggttttcttattttcagtacaatatag 497  Q
        || |||||||||||| || | |   |||  |||| ||| ||||||||||| |||||| |  || |||||||| ||||| |||| ||||||||||||    
T  8866696 gttggtttgattcgtagtctatgtaatctacaaagaatatgaatggacctgaagtggtagataacaccatcatggtgttcttgttttgagtacaatatag 8866795  T
Q  498 gcagaactctttaggataaacacattgttgatcttgtgatgattccttaacgatttggaagggaaatttaataagaggttggtcaggtccacaatatgat 597  Q
    ||| |||||   ||||||||||||   || || |||||||||||||||||| | ||||||||| |||  |||||  |||| || |||||||||  |  ||    
T  8866796 gcaaaactc---aggataaacaca---ttcatgttgtgatgattccttaacaagttggaaggggaatcgaataatcggttcgtaaggtccacatgacaat 8866889  T
Q  598 tctctgcact 607  Q
    ||||||||||    
T  8866890 tctctgcact 8866899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 432 - 557
Target Start/End: Original strand, 9087308 - 9087427
Alignment:
Q  432 gaatttgattggacctgaagaggtagagagaactatcatggttttcttattttcagtacaatataggcagaactctttaggataaacacattgttgatct 531  Q
    |||||||||||||||||||  || |||||| || ||||||||| ||||||||| ||||||||||| ||| |||||   ||||||||||||   |||||||    
T  9087308 gaatttgattggacctgaattggaagagagcacaatcatggttctcttatttttagtacaatataagcaaaactc---aggataaacaca---ttgatct 9087401  T
Q  532 tgtgatgattccttaacgatttggaa 557  Q
    ||||||||||||||||||| ||||||    
T  9087402 tgtgatgattccttaacgagttggaa 9087427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 199 - 287
Target Start/End: Original strand, 9087066 - 9087154
Alignment:
Q  199 taaattggacaagtgatcatatcttgtgactcttgggatgtctgatattggtttctcaagtgtcgtttcctaactgaagagcagttgaa 287  Q
    ||||||||||||||||||||||||||||| |||| |  | ||||||||||||||||||| ||||||||| |||| ||||||||||||||    
T  9087066 taaattggacaagtgatcatatcttgtgaatctttgtttatctgatattggtttctcaaatgtcgtttcttaaccgaagagcagttgaa 9087154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 187 - 292
Target Start/End: Original strand, 9126200 - 9126305
Alignment:
Q  187 gaatcagcaacataaattggacaagtgatcatatcttgtgactcttgggatgtctgatattggtttctcaagtgtcgtttcctaactgaagagcagttga 286  Q
    ||||||||| | ||||||||||| |||||||||||||||||| ||||| ||   ||||  | |||||||| ||||||||||||||| |||||||||||||    
T  9126200 gaatcagcagcgtaaattggacatgtgatcatatcttgtgacccttggaataattgatcgtagtttctcaggtgtcgtttcctaaccgaagagcagttga 9126299  T
Q  287 agaaga 292  Q
    ||||||    
T  9126300 agaaga 9126305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 9258107 - 9258330
Alignment:
Q  1 aaaataatgaatgcaatccttttcattgctttgtgttcacatttcaagcatcctaagtcaaaatttgttccataccatttcaatgagagtatgtttgatt 100  Q
    ||||||| ||||| |||| | ||| | | ||| |||||||||||||||||||||| |||||||||||||||  ||||| |||| |||||   |||  |||    
T  9258107 aaaataacgaatgtaatcttcttcttcgatttatgttcacatttcaagcatcctatgtcaaaatttgttcccgaccatgtcaacgagagacggttgtatt 9258206  T
Q  101 gaatggaagatgcgtgnnnnnnngaaacgcgatcaaacagtttgatgcagtatacaagatcagattcaatgattctttcgctatccgaatcagcaacata 200  Q
    |||| | |||||| |        |||||| ||||||||| ||||||||||||||| |  |||||||||| |||  ||||    || ||||| || |||||    
T  9258207 gaatagtagatgcatcaaatgaggaaacgtgatcaaacaatttgatgcagtatactaagtcagattcaacgatattttcaaggtctgaatcggcgacata 9258306  T
Q  201 aattggacaagtgatcatatcttg 224  Q
    |||||||||||  |||||||||||    
T  9258307 aattggacaagatatcatatcttg 9258330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 199 - 290
Target Start/End: Original strand, 8980043 - 8980134
Alignment:
Q  199 taaattggacaagtgatcatatcttgtgactcttgggatgtctgatattggtttctcaagtgtcgtttcctaactgaagagcagttgaagaa 290  Q
    ||||||||||| || ||||||| |||| ||| |||| ||| ||||| ||||||||||| |||| |||||| ||| ||||||||||| |||||    
T  8980043 taaattggacaggtaatcatattttgtaacttttggaatgactgatcttggtttctcaggtgttgtttcccaacagaagagcagttaaagaa 8980134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 255 - 382
Target Start/End: Original strand, 9108990 - 9109116
Alignment:
Q  255 caagtgtcgtttcctaactgaagagcagttgaagaagaacattttgatatccggttcagaatcaaaccggtaaggttgaaatgatgaattgttgagtatc 354  Q
    |||||| |||||| ||||||||||||||||| ||||| | ||| | ||||  | ||| |||| ||| | |||||||  |||||||||| ||||||| ||     
T  9108990 caagtgccgtttcttaactgaagagcagttggagaaggaaattattatatttgattctgaataaaatctgtaaggtcaaaatgatgaactgttgagcat- 9109088  T
Q  355 aaaaacttttttggaaggcaattgtctg 382  Q
    |||||| ||||| |||||||||||||||    
T  9109089 aaaaacattttttgaaggcaattgtctg 9109116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 466 - 557
Target Start/End: Original strand, 9126479 - 9126561
Alignment:
Q  466 atcatggttttcttattttcagtacaatataggcagaactctttaggataaacacattgttgatcttgtgatgattccttaacgatttggaa 557  Q
    ||||||||||||| ||||   |||||||| ||||| |||||   |||||||||||||||   ||||||||||||||||||||||| ||||||    
T  9126479 atcatggttttctgattt---gtacaatacaggcaaaactc---aggataaacacattg---atcttgtgatgattccttaacgagttggaa 9126561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 716 - 751
Target Start/End: Original strand, 9071294 - 9071329
Alignment:
Q  716 aagaaagtgtgattaggaagaacaaactctgtgctc 751  Q
    |||| |||||||||||||||||||||||||||||||    
T  9071294 aagagagtgtgattaggaagaacaaactctgtgctc 9071329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 89
Target Start/End: Original strand, 9467363 - 9467418
Alignment:
Q  34 tgttcacatttcaagcatcctaagtcaaaatttgttccataccatttcaatgagag 89  Q
    |||| ||||||||||||||||| |||||||||||||||  ||||| ||||| ||||    
T  9467363 tgtttacatttcaagcatcctatgtcaaaatttgttcctgaccatgtcaataagag 9467418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 9170990 - 9170928
Alignment:
Q  16 atccttttcattgctttgtgttcacatttcaagcatcctaagtcaaaatttgttccataccat 78  Q
    ||||| ||| ||| |||||  |||||||||||||||| || |||||||||||||||| |||||    
T  9170990 atcctcttctttgttttgttctcacatttcaagcatcttatgtcaaaatttgttccagaccat 9170928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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