View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18044_low_3 (Length: 333)
Name: NF18044_low_3
Description: NF18044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18044_low_3 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 39553735 - 39553403
Alignment:
| Q |
1 |
actagccaactcaaacaataatggtggtagttccaagcgctcaaaactcgagtccttttctgctttcttgtggaaaatggttgccgaagcggcttcaatc |
100 |
Q |
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| T |
39553735 |
actagccaactcaaacaataatggtggtagttccaagcgctcaaaactcgagtccttttctgctttcttgtggaaaatggttgccgaagcggcttcaatc |
39553636 |
T |
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| Q |
101 |
aataatgaaaatattgttgcaaaaatggggcttgtggttgacggaagaaagaggctaagcaacggtgacaaaaacaaagaagagcttatgaattcatatt |
200 |
Q |
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| T |
39553635 |
aataatgaaaatattgttgcaaaaatggggcttgtggttgacggaagaaagaggctaagcaacggtgacaaaaacaaagaagagcttatgaattcatatt |
39553536 |
T |
|
| Q |
201 |
ttgggaatgtgctttcgattccctatagtggtagattagcagaagagctggttgataatccgttatgttgggtggcagatcgagttcatgagtttttgga |
300 |
Q |
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| T |
39553535 |
ttgggaatgtgctttcgattccctatggtggtagattagcagaagagctggttgataatccgctatgttgggtggctgatcgagttcatgagtttttgga |
39553436 |
T |
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| Q |
301 |
ggcggcggtgacagaggagcatttcttgggtct |
333 |
Q |
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| T |
39553435 |
ggcagcagtgacagaggagcatttcttgggtct |
39553403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 5 - 333
Target Start/End: Complemental strand, 39543712 - 39543384
Alignment:
| Q |
5 |
gccaactcaaacaataatggtggtagttccaagcgctcaaaactcgagtccttttctgctttcttgtggaaaatggttgccgaagcggcttcaatcaata |
104 |
Q |
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| T |
39543712 |
gccaactcaaacaataatggtggtagttccaaacgctcaaaactcgagtccttttctgctttcttgtggaaaatggttgccgaagcggcttcaatcaata |
39543613 |
T |
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| Q |
105 |
atgaaaatattgttgcaaaaatggggcttgtggttgacggaagaaagaggctaagcaacggtgacaaaaacaaagaagagcttatgaattcatattttgg |
204 |
Q |
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| T |
39543612 |
atgaaaatattgttgcaaaaatggggcttgtggttgacggaagaaagaggctaagcaacggtgacaaaaacaaagaagagcttatgaattcatattttgg |
39543513 |
T |
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| Q |
205 |
gaatgtgctttcgattccctatagtggtagattagcagaagagctggttgataatccgttatgttgggtggcagatcgagttcatgagtttttggaggcg |
304 |
Q |
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| T |
39543512 |
gaatgtgctttcgattccctatggtggtagattagcagaagagctggttgataatccgctatgttgggtggctgatcgagttcatgagtttttggaggca |
39543413 |
T |
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| Q |
305 |
gcggtgacagaggagcatttcttgggtct |
333 |
Q |
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| T |
39543412 |
gcagtgacagaggagcatttcttgggtct |
39543384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 35 - 330
Target Start/End: Complemental strand, 39586808 - 39586513
Alignment:
| Q |
35 |
aagcgctcaaaactcgagtccttttctgctttcttgtggaaaatggttgccgaagcggcttcaatcaataatgaaaatattgttgcaaaaatggggcttg |
134 |
Q |
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|||||||||||||| || || ||||||||||||||||||||||||||||| ||| ||||||| ||||| ||||||| ||||||||||||||||| ||| |
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| T |
39586808 |
aagcgctcaaaacttgaatcgttttctgctttcttgtggaaaatggttgcatcagccgcttcaaccaatagtgaaaatgttgttgcaaaaatggggattg |
39586709 |
T |
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| Q |
135 |
tggttgacggaagaaagaggctaagcaacggtgacaaaaacaaagaagagcttatgaattcatattttgggaatgtgctttcgattccctatagtggtag |
234 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||| | |||||||||| |||| |
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| T |
39586708 |
tggttgacggaagaaagagattaagcaacggtgacaaaaacaaagaagagtttatgagttcgtattttgggaatgtgctttcaactccctatagttgtag |
39586609 |
T |
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| Q |
235 |
attagcagaagagctggttgataatccgttatgttgggtggcagatcgagttcatgagtttttggaggcggcggtgacagaggagcatttcttggg |
330 |
Q |
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|||| |||||| || ||||| || |||||||||||||| |||| | ||||||||||||| |||||| |||| || || || ||||||||||| |
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| T |
39586608 |
attaatagaagaacttgttgaaaagtcgttatgttgggtgacagagcaagttcatgagtttgtggaggttgcggacacggaagaacatttcttggg |
39586513 |
T |
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