View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18044_low_4 (Length: 287)

Name: NF18044_low_4
Description: NF18044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18044_low_4
NF18044_low_4
[»] chr5 (9 HSPs)
chr5 (24-276)||(2017973-2018225)
chr5 (32-104)||(32389626-32389698)
chr5 (49-104)||(18175227-18175282)
chr5 (29-104)||(39147730-39147805)
chr5 (30-91)||(18147719-18147780)
chr5 (40-89)||(28758425-28758474)
chr5 (29-69)||(3198330-3198370)
chr5 (29-69)||(17861979-17862019)
chr5 (29-69)||(40445983-40446023)
[»] chr7 (26 HSPs)
chr7 (29-104)||(30806118-30806193)
chr7 (29-104)||(3392470-3392545)
chr7 (29-104)||(10244881-10244956)
chr7 (29-96)||(41854000-41854067)
chr7 (35-104)||(12935749-12935818)
chr7 (29-69)||(30872025-30872065)
chr7 (24-96)||(32984217-32984289)
chr7 (29-96)||(12640589-12640656)
chr7 (29-96)||(15106691-15106758)
chr7 (29-104)||(45284811-45284886)
chr7 (27-73)||(4611240-4611286)
chr7 (29-71)||(8227349-8227391)
chr7 (29-71)||(21597680-21597722)
chr7 (18-68)||(31170226-31170276)
chr7 (39-73)||(40518912-40518946)
chr7 (24-69)||(29461842-29461887)
chr7 (31-64)||(45329141-45329174)
chr7 (29-69)||(1285090-1285130)
chr7 (29-69)||(3948054-3948094)
chr7 (29-69)||(9819570-9819610)
chr7 (29-69)||(10721495-10721535)
chr7 (29-101)||(23274809-23274881)
chr7 (40-96)||(31769512-31769568)
chr7 (28-104)||(37411729-37411805)
chr7 (29-69)||(47607931-47607971)
chr7 (29-69)||(48527190-48527230)
[»] chr2 (19 HSPs)
chr2 (24-107)||(30392821-30392904)
chr2 (27-101)||(23919472-23919546)
chr2 (29-96)||(14663987-14664054)
chr2 (29-96)||(15233416-15233483)
chr2 (29-68)||(15625345-15625384)
chr2 (29-104)||(23405199-23405274)
chr2 (29-92)||(28202297-28202360)
chr2 (28-69)||(6141219-6141260)
chr2 (35-92)||(9375104-9375161)
chr2 (28-69)||(12413492-12413533)
chr2 (28-69)||(12425552-12425593)
chr2 (28-69)||(29734690-29734731)
chr2 (39-92)||(33424323-33424376)
chr2 (29-69)||(3197100-3197140)
chr2 (31-71)||(3904204-3904244)
chr2 (40-96)||(19612729-19612785)
chr2 (29-69)||(25186263-25186303)
chr2 (29-69)||(27244657-27244697)
chr2 (29-69)||(39761438-39761478)
[»] chr1 (18 HSPs)
chr1 (24-102)||(31401239-31401317)
chr1 (39-91)||(4865827-4865879)
chr1 (29-91)||(10292936-10292998)
chr1 (39-104)||(11333677-11333742)
chr1 (39-104)||(11491698-11491763)
chr1 (24-96)||(15775737-15775809)
chr1 (49-104)||(3229706-3229761)
chr1 (29-96)||(6702579-6702646)
chr1 (29-96)||(14519323-14519390)
chr1 (29-104)||(36666568-36666643)
chr1 (29-71)||(41573288-41573330)
chr1 (40-73)||(17517027-17517060)
chr1 (34-75)||(48145125-48145166)
chr1 (29-69)||(9116893-9116933)
chr1 (29-69)||(15595728-15595768)
chr1 (29-69)||(24874141-24874181)
chr1 (29-69)||(44641527-44641567)
chr1 (29-73)||(48607772-48607816)
[»] chr4 (20 HSPs)
chr4 (39-104)||(49056788-49056853)
chr4 (24-96)||(9661548-9661620)
chr4 (28-88)||(21442637-21442697)
chr4 (29-104)||(27091464-27091539)
chr4 (26-96)||(46582634-46582704)
chr4 (28-73)||(35851724-35851769)
chr4 (29-104)||(37310030-37310105)
chr4 (29-104)||(40051625-40051700)
chr4 (29-92)||(50376653-50376716)
chr4 (29-96)||(53572327-53572394)
chr4 (39-96)||(1458018-1458075)
chr4 (39-104)||(22433363-22433428)
chr4 (39-104)||(30057235-30057300)
chr4 (39-104)||(32339337-32339402)
chr4 (40-104)||(38433322-38433386)
chr4 (39-104)||(41137912-41137977)
chr4 (29-102)||(52699192-52699265)
chr4 (29-89)||(4234292-4234352)
chr4 (40-84)||(10042430-10042474)
chr4 (29-69)||(33933766-33933806)
[»] chr8 (13 HSPs)
chr8 (24-84)||(20872470-20872530)
chr8 (30-104)||(12770372-12770446)
chr8 (26-91)||(23435238-23435303)
chr8 (34-98)||(12510433-12510497)
chr8 (29-96)||(42880951-42881018)
chr8 (30-104)||(11231424-11231498)
chr8 (28-69)||(24696027-24696068)
chr8 (29-101)||(2294094-2294166)
chr8 (29-69)||(7553679-7553719)
chr8 (28-104)||(13105093-13105169)
chr8 (29-89)||(17499097-17499157)
chr8 (24-104)||(32191868-32191948)
chr8 (24-96)||(34472295-34472367)
[»] chr6 (14 HSPs)
chr6 (29-104)||(2488878-2488953)
chr6 (24-68)||(28957104-28957148)
chr6 (32-84)||(30527768-30527820)
chr6 (32-71)||(10999153-10999192)
chr6 (28-91)||(24623316-24623379)
chr6 (29-96)||(30938391-30938458)
chr6 (28-71)||(33608336-33608379)
chr6 (29-71)||(16453356-16453398)
chr6 (28-69)||(2692214-2692255)
chr6 (26-71)||(14945532-14945577)
chr6 (39-96)||(27218897-27218954)
chr6 (25-69)||(7771286-7771330)
chr6 (28-68)||(8330699-8330739)
chr6 (29-69)||(29069483-29069523)
[»] chr3 (16 HSPs)
chr3 (29-104)||(52309102-52309177)
chr3 (29-71)||(31085008-31085050)
chr3 (26-104)||(53432729-53432807)
chr3 (29-69)||(12976623-12976663)
chr3 (29-104)||(4227736-4227811)
chr3 (29-71)||(7827508-7827550)
chr3 (29-71)||(7829896-7829938)
chr3 (39-73)||(35718579-35718613)
chr3 (30-104)||(49443415-49443489)
chr3 (26-75)||(48251572-48251621)
chr3 (40-72)||(11995145-11995177)
chr3 (28-96)||(32776213-32776281)
chr3 (39-83)||(36763442-36763486)
chr3 (29-69)||(37921019-37921059)
chr3 (24-96)||(47098730-47098802)
chr3 (28-68)||(48209233-48209273)
[»] scaffold0330 (1 HSPs)
scaffold0330 (39-104)||(6781-6846)
[»] scaffold0445 (1 HSPs)
scaffold0445 (29-96)||(4014-4081)
[»] scaffold0519 (1 HSPs)
scaffold0519 (30-104)||(2954-3028)
[»] scaffold0012 (1 HSPs)
scaffold0012 (30-96)||(122550-122616)
[»] scaffold0031 (1 HSPs)
scaffold0031 (24-73)||(50024-50073)
[»] scaffold0370 (2 HSPs)
scaffold0370 (27-75)||(10504-10552)
scaffold0370 (27-75)||(15794-15842)


Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 24 - 276
Target Start/End: Original strand, 2017973 - 2018225
Alignment:
Q  24 ttcctgtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccacttgtta-tttaagtctccctg 122  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||| ||||||||||||||||| ||||||||||| ||    
T  2017973 ttcctgtgagtttatctcagttgatagggacattgtataatatatgtagaagacggagttctaaccc-agacatcccacttgttactttaagtctccttg 2018071  T
Q  123 acccaataaaaaatataaaatactctcctacgatttatgtttgaactaagaaattgaactaaaaaatctcacttcttatcccataattcataccaattaa 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2018072 acccaataaaaaatataaaatactctcctacgatttatgtttgaactaagaaattgaactaaaaaatctcacttcttatcccataattcataccaattaa 2018171  T
Q  223 gttctataaccctccacaaacaccatgggctattaagaaagaaaagatgatgtc 276  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2018172 gttctataaccttccacaaacaccatgggctattaagaaagaaaagatgatgtc 2018225  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 32389698 - 32389626
Alignment:
Q  32 agtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 104  Q
    |||||| |||||||| ||| || |||||||| |||||||||||| |||||||||||  ||||||| |||||||    
T  32389698 agtttagctcagttggtagagatattgcatattatatgtaggagtcggagttcaaattccagacaccccactt 32389626  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 18175227 - 18175282
Alignment:
Q  49 agggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 104  Q
    |||||| ||||||| |||||||||| | ||| |||| |||||||||||||||||||    
T  18175227 agggacgttgcatattatatgtaggggtcggggttcgaaccccagacatcccactt 18175282  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 104
Target Start/End: Original strand, 39147730 - 39147805
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 104  Q
    |||||||||||||||||| |||| | | |||||| ||||||| ||||  ||||||| ||||||| ||| |||||||    
T  39147730 gtgagtttatctcagttggtaggaatactgcatattatatgttggagctggagttcgaaccccaaacaccccactt 39147805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 18147719 - 18147780
Alignment:
Q  30 tgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaacccc 91  Q
    |||||||| ||||||||||| ||||| ||||||||||||| ||||  ||| |||||| ||||    
T  18147719 tgagtttagctcagttgataaggacaatgcataatatatgcaggatccggggttcaaccccc 18147780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 28758474 - 28758425
Alignment:
Q  40 tcagttgatagggacattgcataatatatgtaggagacggagttcaaacc 89  Q
    ||||||| ||||||||||||||||| |||| ||||| ||| |||||||||    
T  28758474 tcagttggtagggacattgcataatttatgcaggagtcggggttcaaacc 28758425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 3198330 - 3198370
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatg 69  Q
    ||||| ||| |||||||| ||||||||||||||||||||||    
T  3198330 gtgagcttagctcagttggtagggacattgcataatatatg 3198370  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 17861979 - 17862019
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatg 69  Q
    ||||||||| |||||||| |||||||| |||||||||||||    
T  17861979 gtgagtttagctcagttggtagggacaatgcataatatatg 17862019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 40445983 - 40446023
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatg 69  Q
    ||||||||| ||||||||||| ||||| |||||||||||||    
T  40445983 gtgagtttaactcagttgataaggacaatgcataatatatg 40446023  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 104
Target Start/End: Original strand, 30806118 - 30806193
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 104  Q
    ||||||||| |||||||| |||||| |||||||| |||||| ||| | |||||||| |||||| ||||||||||||    
T  30806118 gtgagtttagctcagttggtagggatattgcatattatatgcaggggtcggagttcgaaccccggacatcccactt 30806193  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 104
Target Start/End: Original strand, 3392470 - 3392545
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 104  Q
    ||||| ||| ||||||||||| ||| |||||||| |||||||||| | ||| |||| ||||||||||| |||||||    
T  3392470 gtgagcttaactcagttgatatggatattgcatattatatgtaggggtcggggttcgaaccccagacaccccactt 3392545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 104
Target Start/End: Complemental strand, 10244956 - 10244881
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 104  Q
    ||||| ||| |||||||| |||||| |||||||| |||||||||||| ||| |||| |||||| |||| |||||||    
T  10244956 gtgagcttagctcagttggtagggatattgcatattatatgtaggagccggggttcgaaccccggacaccccactt 10244881  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 41854000 - 41854067
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 96  Q
    ||||| ||| ||||||||  |||||||||||||||| |||| ||| ||||||||||||||||| ||||    
T  41854000 gtgagcttagctcagttggcagggacattgcataatttatgcaggggacggagttcaaaccccggaca 41854067  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 104
Target Start/End: Original strand, 12935749 - 12935818
Alignment:
Q  35 ttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 104  Q
    ||||||||||||  |||||||||||||||| |||||||| || || |||| ||||||||||  |||||||    
T  12935749 ttatctcagttggcagggacattgcataatttatgtaggggatggggttcgaaccccagacgccccactt 12935818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 30872025 - 30872065
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatg 69  Q
    |||||||||||||||||| || |||||||||||||||||||    
T  30872025 gtgagtttatctcagttggtatggacattgcataatatatg 30872065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 32984289 - 32984217
Alignment:
Q  24 ttcctgtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 96  Q
    |||||||||| ||| |||||||| |||||| |||||||| |||||  ||||| ||| ||||||||||| ||||    
T  32984289 ttcctgtgagcttagctcagttggtagggatattgcatattatatacaggagtcggggttcaaaccccggaca 32984217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 12640656 - 12640589
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 96  Q
    ||||| ||| |||||||| |||||| |||||||| |||||| ||||| ||| |||| |||||||||||    
T  12640656 gtgagcttagctcagttggtagggatattgcatattatatgcaggagccggggttcgaaccccagaca 12640589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 15106758 - 15106691
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 96  Q
    ||||| ||| |||||||| |||||| |||||||| |||||| ||||| ||| |||| |||||||||||    
T  15106758 gtgagcttaactcagttggtagggatattgcatattatatgcaggagtcggggttcgaaccccagaca 15106691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 104
Target Start/End: Complemental strand, 45284886 - 45284811
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 104  Q
    ||||| ||| |||||||||||||||||||| ||||| |||| ||| | ||| |||| |||||| |||| |||||||    
T  45284886 gtgagcttagctcagttgatagggacattgaataatttatgcaggggtcggggttcgaaccccggacaccccactt 45284811  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 73
Target Start/End: Original strand, 4611240 - 4611286
Alignment:
Q  27 ctgtgagtttatctcagttgatagggacattgcataatatatgtagg 73  Q
    ||||||| ||| |||||||| ||||||||||||||||| ||||||||    
T  4611240 ctgtgagcttagctcagttggtagggacattgcataatttatgtagg 4611286  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 8227349 - 8227391
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatgta 71  Q
    ||||||||| ||||||||||| ||||| |||||||||||||||    
T  8227349 gtgagtttagctcagttgataaggacaatgcataatatatgta 8227391  T

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Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 21597680 - 21597722
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatgta 71  Q
    ||||| ||||||||||||||| ||||| |||||||||||||||    
T  21597680 gtgagcttatctcagttgatatggacaatgcataatatatgta 21597722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 31170276 - 31170226
Alignment:
Q  18 gctggtttcctgtgagtttatctcagttgatagggacattgcataatatat 68  Q
    |||||| | ||||||||||| |||||||||||| || ||||||||||||||    
T  31170276 gctggtattctgtgagtttagctcagttgatagagatattgcataatatat 31170226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 73
Target Start/End: Complemental strand, 40518946 - 40518912
Alignment:
Q  39 ctcagttgatagggacattgcataatatatgtagg 73  Q
    |||||||| ||||||||||||||||||||||||||    
T  40518946 ctcagttggtagggacattgcataatatatgtagg 40518912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 29461887 - 29461842
Alignment:
Q  24 ttcctgtgagtttatctcagttgatagggacattgcataatatatg 69  Q
    |||| ||||||||| |||||||| |||||||| |||||||||||||    
T  29461887 ttcccgtgagtttaactcagttggtagggacaatgcataatatatg 29461842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 45329141 - 45329174
Alignment:
Q  31 gagtttatctcagttgatagggacattgcataat 64  Q
    |||||||||||||||| |||||||||||||||||    
T  45329141 gagtttatctcagttggtagggacattgcataat 45329174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 1285130 - 1285090
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatg 69  Q
    ||||||||| ||||||||||||| ||| |||||||||||||    
T  1285130 gtgagtttaactcagttgataggaacaatgcataatatatg 1285090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 3948054 - 3948094
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatg 69  Q
    ||||||||| |||||||||||| |||| |||||||||||||    
T  3948054 gtgagtttaactcagttgatagagacaatgcataatatatg 3948094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 9819610 - 9819570
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatg 69  Q
    |||||||||||||||||| |||| ||| |||||||||||||    
T  9819610 gtgagtttatctcagttggtaggaacaatgcataatatatg 9819570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 10721535 - 10721495
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatg 69  Q
    |||||||||||||||||| |||| ||| |||||||||||||    
T  10721535 gtgagtttatctcagttggtaggaacaatgcataatatatg 10721495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 23274881 - 23274809
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatccca 101  Q
    ||||| ||| || ||||| ||||||||||||||||| |||| ||| | |||||||| |||||| |||| ||||    
T  23274881 gtgagcttagctaagttggtagggacattgcataatttatgcaggggccggagttcgaaccccggacacccca 23274809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 31769568 - 31769512
Alignment:
Q  40 tcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 96  Q
    ||||||| |||||| |||||||| |||||| ||||| ||| |||| |||||||||||    
T  31769568 tcagttggtagggatattgcatattatatgcaggagtcggggttcgaaccccagaca 31769512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 104
Target Start/End: Complemental strand, 37411805 - 37411729
Alignment:
Q  28 tgtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 104  Q
    |||||||||| |||| ||| ||||||||||||||||| |||| ||| | |||||||  ||| || |||| |||||||    
T  37411805 tgtgagtttagctcaattggtagggacattgcataatttatgcaggggtcggagtttgaactccggacaccccactt 37411729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 47607971 - 47607931
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatg 69  Q
    ||||||||| |||||||| |||||||||| |||||||||||    
T  47607971 gtgagtttagctcagttggtagggacattacataatatatg 47607931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 48527190 - 48527230
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatg 69  Q
    ||||| ||||||||||||||| ||||| |||||||||||||    
T  48527190 gtgagcttatctcagttgataaggacaatgcataatatatg 48527230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 107
Target Start/End: Complemental strand, 30392904 - 30392821
Alignment:
Q  24 ttcctgtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccacttgtt 107  Q
    ||||| |||| ||| |||||||| |||||| |||||||| |||||||||||| ||| |||| |||||||||||  |||||||||    
T  30392904 ttcctttgagcttagctcagttggtagggatattgcatattatatgtaggagtcggggttcgaaccccagacactccacttgtt 30392821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 23919546 - 23919472
Alignment:
Q  27 ctgtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatccca 101  Q
    ||||||| ||| |||||||| |||||||||||||||||||||| ||| | ||| |||| || |||||||| ||||    
T  23919546 ctgtgagcttagctcagttggtagggacattgcataatatatggaggggtcggggttcgaatcccagacacccca 23919472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 14663987 - 14664054
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 96  Q
    |||||||||  ||||||| ||||||||||||||||| |||| ||| | | ||||||||||||| ||||    
T  14663987 gtgagtttagttcagttggtagggacattgcataatttatgcaggggccagagttcaaaccccggaca 14664054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 15233416 - 15233483
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 96  Q
    ||||| ||| |||| ||| |||||| |||||||| |||||| ||| | ||||||||||||||||||||    
T  15233416 gtgagcttagctcaattggtagggatattgcatattatatgcaggggccggagttcaaaccccagaca 15233483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 15625384 - 15625345
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatat 68  Q
    ||||||||| |||| |||||||||||||||||||||||||    
T  15625384 gtgagtttagctcaattgatagggacattgcataatatat 15625345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 104
Target Start/End: Original strand, 23405199 - 23405274
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 104  Q
    ||||| ||| |||||||| |||||||||||||||||||||| ||| | ||| |||| |||||  |||| |||||||    
T  23405199 gtgagcttagctcagttggtagggacattgcataatatatgcaggggtcggggttcgaaccctggacaccccactt 23405274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 92
Target Start/End: Original strand, 28202297 - 28202360
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaacccca 92  Q
    ||||| ||| ||||||||||||||||| ||||||||||||||| |   || |||||||||||||    
T  28202297 gtgagcttagctcagttgatagggacaatgcataatatatgtaaggtccgaagttcaaacccca 28202360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 6141219 - 6141260
Alignment:
Q  28 tgtgagtttatctcagttgatagggacattgcataatatatg 69  Q
    ||||||||||||||||||| || ||||| |||||||||||||    
T  6141219 tgtgagtttatctcagttggtaaggacaatgcataatatatg 6141260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 9375161 - 9375104
Alignment:
Q  35 ttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaacccca 92  Q
    ||||||||||||  ||| ||||||||||||||||||||| | ||| |||| |||||||    
T  9375161 ttatctcagttggcaggaacattgcataatatatgtaggggtcggggttcgaacccca 9375104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 12413492 - 12413533
Alignment:
Q  28 tgtgagtttatctcagttgatagggacattgcataatatatg 69  Q
    |||||||||||||| ||||||| ||||| |||||||||||||    
T  12413492 tgtgagtttatctcggttgataaggacaatgcataatatatg 12413533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 12425552 - 12425593
Alignment:
Q  28 tgtgagtttatctcagttgatagggacattgcataatatatg 69  Q
    |||||||||||||| ||||||| ||||| |||||||||||||    
T  12425552 tgtgagtttatctcggttgataaggacaatgcataatatatg 12425593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 29734690 - 29734731
Alignment:
Q  28 tgtgagtttatctcagttgatagggacattgcataatatatg 69  Q
    |||||||||| ||||||||||| ||||| |||||||||||||    
T  29734690 tgtgagtttagctcagttgatatggacaatgcataatatatg 29734731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 33424376 - 33424323
Alignment:
Q  39 ctcagttgatagggacattgcataatatatgtaggagacggagttcaaacccca 92  Q
    |||| |||||||||||| ||||||||||||| | ||  ||||||||||||||||    
T  33424376 ctcaattgatagggacagtgcataatatatgcaagattcggagttcaaacccca 33424323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 3197140 - 3197100
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatg 69  Q
    ||||||||| |||||||| |||||||| |||||||||||||    
T  3197140 gtgagtttagctcagttggtagggacaatgcataatatatg 3197100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 3904204 - 3904244
Alignment:
Q  31 gagtttatctcagttgatagggacattgcataatatatgta 71  Q
    ||||||| || |||||||||||||| |||||||||||||||    
T  3904204 gagtttaacttagttgatagggacaatgcataatatatgta 3904244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 19612729 - 19612785
Alignment:
Q  40 tcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 96  Q
    ||||||| |||||| |||||||| ||||||||||||  || |||| |||||||||||    
T  19612729 tcagttggtagggatattgcatattatatgtaggagctggggttcgaaccccagaca 19612785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 25186303 - 25186263
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatg 69  Q
    ||||||||| ||||||||||| ||||| |||||||||||||    
T  25186303 gtgagtttagctcagttgatatggacaatgcataatatatg 25186263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 27244657 - 27244697
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatg 69  Q
    ||||| ||| ||||||||||||||||| |||||||||||||    
T  27244657 gtgagcttagctcagttgatagggacaatgcataatatatg 27244697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 39761438 - 39761478
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatg 69  Q
    ||||||||| ||||||||||| ||||| |||||||||||||    
T  39761438 gtgagtttagctcagttgataaggacaatgcataatatatg 39761478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 102
Target Start/End: Complemental strand, 31401317 - 31401239
Alignment:
Q  24 ttcctgtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccac 102  Q
    |||| ||||| ||| |||||||||||||||||||||||||| |||| ||||| ||  ||||||||||| |||| |||||    
T  31401317 ttcccgtgagcttagctcagttgatagggacattgcataatttatgcaggagccgaggttcaaaccccggacaccccac 31401239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 4865879 - 4865827
Alignment:
Q  39 ctcagttgatagggacattgcataatatatgtaggagacggagttcaaacccc 91  Q
    |||||||| |||||||||||||||||||||||||| | |||||||| ||||||    
T  4865879 ctcagttggtagggacattgcataatatatgtaggggtcggagttcgaacccc 4865827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 10292936 - 10292998
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaacccc 91  Q
    ||||| ||| ||||||||||||||||| ||||||||||||||| | ||||| ||| |||||||    
T  10292936 gtgagcttaactcagttgatagggacaatgcataatatatgtaagggacggggtttaaacccc 10292998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 104
Target Start/End: Original strand, 11333677 - 11333742
Alignment:
Q  39 ctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 104  Q
    |||||||| ||||||||||||||||| |||| ||| | |||||||| |||||| |||| |||||||    
T  11333677 ctcagttggtagggacattgcataatttatgcaggggccggagttcgaaccccggacaccccactt 11333742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 104
Target Start/End: Original strand, 11491698 - 11491763
Alignment:
Q  39 ctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 104  Q
    |||||||| ||||||||||||||||| |||| ||| | |||||||| |||||| |||| |||||||    
T  11491698 ctcagttggtagggacattgcataatttatgcaggggccggagttcgaaccccggacaccccactt 11491763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 15775737 - 15775809
Alignment:
Q  24 ttcctgtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 96  Q
    |||| ||||| ||| |||| ||| |||||| |||||||| |||||| ||||| |||||||| |||||||||||    
T  15775737 ttcccgtgagcttaactcaattggtagggatattgcatattatatgcaggagccggagttcgaaccccagaca 15775809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 3229761 - 3229706
Alignment:
Q  49 agggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 104  Q
    |||||| |||||||||||||||||| |  || ||||||||||| ||||||||||||    
T  3229761 agggacgttgcataatatatgtaggggttggggttcaaaccccggacatcccactt 3229706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 6702579 - 6702646
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 96  Q
    ||||| ||| |||||||| |||||| |||||||| |||||| ||||| ||| |||| |||||||||||    
T  6702579 gtgagcttagctcagttggtagggatattgcatattatatgcaggagtcggggttcgaaccccagaca 6702646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 14519323 - 14519390
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 96  Q
    ||||||||||||||||||||||||| ||| |||| |||||  ||||| ||| |||| | |||||||||    
T  14519323 gtgagtttatctcagttgatagggatattccatattatattcaggagtcggggttcgagccccagaca 14519390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 104
Target Start/End: Complemental strand, 36666643 - 36666568
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 104  Q
    ||||| ||| |||||||| ||||||||||||||||| |||| ||| | ||| |||| |||||| |||| |||||||    
T  36666643 gtgagcttagctcagttggtagggacattgcataatttatgcaggggccggggttcgaaccccggacaccccactt 36666568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 41573330 - 41573288
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatgta 71  Q
    ||||||||| |||||||| |||||||| |||||||||||||||    
T  41573330 gtgagtttaactcagttggtagggacaatgcataatatatgta 41573288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 73
Target Start/End: Complemental strand, 17517060 - 17517027
Alignment:
Q  40 tcagttgatagggacattgcataatatatgtagg 73  Q
    |||||||||||||||||| |||||||||||||||    
T  17517060 tcagttgatagggacattacataatatatgtagg 17517027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 48145166 - 48145125
Alignment:
Q  34 tttatctcagttgatagggacattgcataatatatgtaggag 75  Q
    ||||||||||||| ||||||||||| |||||||| |||||||    
T  48145166 tttatctcagttggtagggacattgtataatataggtaggag 48145125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 9116933 - 9116893
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatg 69  Q
    ||||||||| ||||||||||| ||||| |||||||||||||    
T  9116933 gtgagtttaactcagttgatatggacaatgcataatatatg 9116893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 15595728 - 15595768
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatg 69  Q
    ||||| ||| |||||||| ||||||||||||||||||||||    
T  15595728 gtgagcttagctcagttggtagggacattgcataatatatg 15595768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 24874141 - 24874181
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatg 69  Q
    ||||| ||| |||||||||||||||||||||||||| ||||    
T  24874141 gtgagcttagctcagttgatagggacattgcataatttatg 24874181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 44641527 - 44641567
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatg 69  Q
    ||||||||| ||||||||||| ||||| |||||||||||||    
T  44641527 gtgagtttagctcagttgatatggacaatgcataatatatg 44641567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 48607816 - 48607772
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatgtagg 73  Q
    ||||||||| ||||||||||||||| |||||||  ||||||||||    
T  48607816 gtgagtttaactcagttgatagggatattgcattttatatgtagg 48607772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 104
Target Start/End: Original strand, 49056788 - 49056853
Alignment:
Q  39 ctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 104  Q
    |||||||| ||||||||||||||| |||||| ||||| |||||||| |||||| |||| |||||||    
T  49056788 ctcagttggtagggacattgcatattatatgcaggagccggagttcgaaccccggacaccccactt 49056853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 9661548 - 9661620
Alignment:
Q  24 ttcctgtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 96  Q
    |||| |||||||||||||||||| || ||| |||||||| |||||||| ||| |||||||| |||||| ||||    
T  9661548 ttcccgtgagtttatctcagttggtatggatattgcatattatatgtaagagtcggagttcgaaccccggaca 9661620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 21442697 - 21442637
Alignment:
Q  28 tgtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaac 88  Q
    |||||||||| ||||||||||||||||||||||||||| | | ||||| |||| |||||||    
T  21442697 tgtgagtttaactcagttgatagggacattgcataatagaggaaggagtcggaattcaaac 21442637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 104
Target Start/End: Complemental strand, 27091539 - 27091464
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 104  Q
    ||||||||| |||||||| ||||||||||| ||||| | || ||| | |||||||| |||||| ||||||||||||    
T  27091539 gtgagtttagctcagttggtagggacattgtataatttctgcaggggtcggagttcgaaccccggacatcccactt 27091464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 96
Target Start/End: Original strand, 46582634 - 46582704
Alignment:
Q  26 cctgtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 96  Q
    |||||||||||| |||||||| |||||| |||||||| |||||| ||||| ||  |||| |||||||||||    
T  46582634 cctgtgagtttagctcagttggtagggatattgcatattatatgcaggagccgaggttcgaaccccagaca 46582704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 35851769 - 35851724
Alignment:
Q  28 tgtgagtttatctcagttgatagggacattgcataatatatgtagg 73  Q
    |||||| ||| |||||||| ||||||||||||||||||||||||||    
T  35851769 tgtgagcttaactcagttggtagggacattgcataatatatgtagg 35851724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 104
Target Start/End: Original strand, 37310030 - 37310105
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 104  Q
    ||||||||| |||||||| || ||| |||||||| |||||||||| |  || |||||||||||  |||||||||||    
T  37310030 gtgagtttaactcagttggtatggatattgcatattatatgtaggggttggggttcaaaccccgtacatcccactt 37310105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 104
Target Start/End: Original strand, 40051625 - 40051700
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 104  Q
    ||||| ||| |||||||| |||||| |||||||| |||||||||| |  || |||| ||||||||||| |||||||    
T  40051625 gtgagcttagctcagttggtagggatattgcatattatatgtaggggtaggggttcgaaccccagacaccccactt 40051700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 92
Target Start/End: Complemental strand, 50376716 - 50376653
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaacccca 92  Q
    ||||||||| |||||||| ||| |||||||||||||||||| ||| || || |||| |||||||    
T  50376716 gtgagtttaactcagttggtagagacattgcataatatatgcaggggaaggggttcgaacccca 50376653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 53572394 - 53572327
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 96  Q
    ||||| ||| ||||||||||||||| |||||||| |||||| ||||| |||  |||||||||| ||||    
T  53572394 gtgagcttaactcagttgatagggatattgcatattatatgcaggagccgggattcaaaccccggaca 53572327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 1458075 - 1458018
Alignment:
Q  39 ctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 96  Q
    ||||||||||||||| |||||||| |||||| ||||| ||| |||| |||||| ||||    
T  1458075 ctcagttgatagggatattgcatattatatgcaggagccggggttcgaaccccggaca 1458018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 22433428 - 22433363
Alignment:
Q  39 ctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 104  Q
    ||||||||||||| ||||||||||||||||| ||| | | |||||| |||| || |||| ||||||    
T  22433428 ctcagttgataggaacattgcataatatatgaaggggtcagagttcgaacctcaaacattccactt 22433363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 104
Target Start/End: Original strand, 30057235 - 30057300
Alignment:
Q  39 ctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 104  Q
    |||||||| |||||| |||||||| |||||| ||| | ||| ||||||||||| |||| |||||||    
T  30057235 ctcagttggtagggatattgcatattatatgcaggggtcggggttcaaaccccggacaccccactt 30057300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 104
Target Start/End: Original strand, 32339337 - 32339402
Alignment:
Q  39 ctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 104  Q
    |||||||| |||||| |||||||| |||||| | | | ||| |||||||||||||||| |||||||    
T  32339337 ctcagttgttagggatattgcatattatatgcaagggtcggggttcaaaccccagacaccccactt 32339402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 38433322 - 38433386
Alignment:
Q  40 tcagttgatagggacattgcataat-atatgtaggagacggagttcaaaccccagacatcccactt 104  Q
    |||||||||||| ||| ||||| || ||||||||||| |||||||| ||||||||||| |||||||    
T  38433322 tcagttgatagg-acaatgcattattatatgtaggagtcggagttcgaaccccagacaccccactt 38433386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 41137977 - 41137912
Alignment:
Q  39 ctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 104  Q
    |||||||| |||||||||||||||||||||| ||| |  || |||| |||| |||||| |||||||    
T  41137977 ctcagttggtagggacattgcataatatatgcaggggttggggttcgaaccacagacaccccactt 41137912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 52699192 - 52699265
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccac 102  Q
    ||||||||| ||||||||||||| | |||||||| |||||  ||| |  ||||||| |||| ||||||||||||    
T  52699192 gtgagtttaactcagttgataggaatattgcatattatatacaggggttggagttcgaacctcagacatcccac 52699265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 4234352 - 4234292
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaacc 89  Q
    ||||| ||| ||||||||||||||| |||||||| |||||| ||||| ||| |||| ||||    
T  4234352 gtgagcttagctcagttgatagggatattgcatattatatgcaggagccggggttcgaacc 4234292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 10042474 - 10042430
Alignment:
Q  40 tcagttgatagggacattgcataatatatgtaggagacggagttc 84  Q
    ||||||| |||||| |||||||| |||||||||||| ||||||||    
T  10042474 tcagttggtagggatattgcatattatatgtaggagtcggagttc 10042430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 33933806 - 33933766
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatg 69  Q
    ||||| ||| |||||||| ||||||||||||||||||||||    
T  33933806 gtgagcttagctcagttggtagggacattgcataatatatg 33933766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 20872530 - 20872470
Alignment:
Q  24 ttcctgtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttc 84  Q
    |||||||||| ||| |||||||||||||||||||||||||| |||| ||| | ||||||||    
T  20872530 ttcctgtgagcttagctcagttgatagggacattgcataatttatgcaggggtcggagttc 20872470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 104
Target Start/End: Original strand, 12770372 - 12770446
Alignment:
Q  30 tgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 104  Q
    |||| ||| |||||||||||||||||||||||||| |||| ||| | ||| |||| |||||| |||| |||||||    
T  12770372 tgagcttagctcagttgatagggacattgcataatttatgcaggggccggggttcgaaccccggacaccccactt 12770446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 23435303 - 23435238
Alignment:
Q  26 cctgtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaacccc 91  Q
    |||||||| ||| ||||||||||||||| |||||||| |||||| ||||| ||| |||| ||||||    
T  23435303 cctgtgagcttagctcagttgatagggatattgcatattatatgcaggagccggggttcgaacccc 23435238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 98
Target Start/End: Complemental strand, 12510497 - 12510433
Alignment:
Q  34 tttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatc 98  Q
    |||| |||| || ||||||||||||||||||||||||| | | |||||||| |||| ||||||||    
T  12510497 tttaactcaattaatagggacattgcataatatatgtatgggtcggagttcgaacctcagacatc 12510433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 42880951 - 42881018
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 96  Q
    ||||| ||| |||||||| |||||| |||||||| |||||||||||| ||| |||| |||||| ||||    
T  42880951 gtgagcttaactcagttggtagggatattgcatattatatgtaggagccggggttcgaaccccggaca 42881018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 104
Target Start/End: Original strand, 11231424 - 11231498
Alignment:
Q  30 tgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 104  Q
    |||| ||| ||||||||| |||||||||||||||| |||| ||| | ||| |||| |||||| |||| |||||||    
T  11231424 tgagcttagctcagttgaaagggacattgcataatttatgcaggggccggggttcgaaccccggacaccccactt 11231498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 69
Target Start/End: Complemental strand, 24696068 - 24696027
Alignment:
Q  28 tgtgagtttatctcagttgatagggacattgcataatatatg 69  Q
    |||||| ||||||||||||||| ||||| |||||||||||||    
T  24696068 tgtgagattatctcagttgatatggacaatgcataatatatg 24696027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 2294166 - 2294094
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatccca 101  Q
    ||||||||| |||| |||||||||| ||| |||| |||||| ||| | ||| |||| ||||||||||| ||||    
T  2294166 gtgagtttagctcaattgatagggatattacatattatatgcaggggtcggggttcgaaccccagacacccca 2294094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 7553679 - 7553719
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatg 69  Q
    ||||||||| |||||||| |||||||| |||||||||||||    
T  7553679 gtgagtttaactcagttggtagggacaatgcataatatatg 7553719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 104
Target Start/End: Original strand, 13105093 - 13105169
Alignment:
Q  28 tgtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 104  Q
    |||||| ||| |||||||| |||||||| ||||||||||||| | | | ||| |||| |||| |||||| |||||||    
T  13105093 tgtgagattaactcagttggtagggacaatgcataatatatgcaagggccggggttcgaacctcagacaccccactt 13105169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 17499157 - 17499097
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaacc 89  Q
    ||||||||  |||||||| ||||||||||||||||| |||| |||||  || |||||||||    
T  17499157 gtgagtttgactcagttggtagggacattgcataatttatgcaggagcaggggttcaaacc 17499097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 32191948 - 32191868
Alignment:
Q  24 ttcctgtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 104  Q
    |||| |||||||||  ||||||  |||||||| |||||| | |||||||| |  ||||||| ||||||||||| |||||||    
T  32191948 ttcccgtgagtttagttcagtttgtagggacaatgcatattttatgtaggggttggagttcgaaccccagacaccccactt 32191868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 34472295 - 34472367
Alignment:
Q  24 ttcctgtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 96  Q
    |||| ||||| ||| |||||||| |||||| |||||||| |||||| |||||  || |||| |||||||||||    
T  34472295 ttcccgtgagcttaactcagttggtagggatattgcatattatatgcaggagttggggttcgaaccccagaca 34472367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 104
Target Start/End: Complemental strand, 2488953 - 2488878
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 104  Q
    ||||||||| |||||||| ||||||||||| ||||| | || ||| | |||||||| |||||| ||||||||||||    
T  2488953 gtgagtttagctcagttggtagggacattgtataatttctgcaggggtcggagttcgaaccccggacatcccactt 2488878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 28957104 - 28957148
Alignment:
Q  24 ttcctgtgagtttatctcagttgatagggacattgcataatatat 68  Q
    |||||||||||||| |||||||||||  |||||||||||||||||    
T  28957104 ttcctgtgagtttaactcagttgataaagacattgcataatatat 28957148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 30527768 - 30527820
Alignment:
Q  32 agtttatctcagttgatagggacattgcataatatatgtaggagacggagttc 84  Q
    ||||||||||| |||||||||| |||||||||||||| ||||||  |||||||    
T  30527768 agtttatctcaattgatagggatattgcataatatatataggagttggagttc 30527820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 71
Target Start/End: Original strand, 10999153 - 10999192
Alignment:
Q  32 agtttatctcagttgatagggacattgcataatatatgta 71  Q
    |||||| ||||||||||| |||||||||||||||||||||    
T  10999153 agtttaactcagttgataaggacattgcataatatatgta 10999192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 91
Target Start/End: Complemental strand, 24623379 - 24623316
Alignment:
Q  28 tgtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaacccc 91  Q
    |||||||||| ||||||||||| ||||| ||||||||||||||| |   ||| |||||||||||    
T  24623379 tgtgagtttagctcagttgatatggacaatgcataatatatgtaaggttcggggttcaaacccc 24623316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 30938391 - 30938458
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 96  Q
    ||||| ||| |||||||| |||||||||||||||||||||| |||   ||| |||| |||||||||||    
T  30938391 gtgagcttaactcagttggtagggacattgcataatatatgcagggaccggggttcgaaccccagaca 30938458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 71
Target Start/End: Original strand, 33608336 - 33608379
Alignment:
Q  28 tgtgagtttatctcagttgatagggacattgcataatatatgta 71  Q
    |||||||||||||||||||||| ||||| || ||||||||||||    
T  33608336 tgtgagtttatctcagttgataaggacaatgtataatatatgta 33608379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 16453398 - 16453356
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatgta 71  Q
    |||||||||||||||||| |||||||| | |||||||||||||    
T  16453398 gtgagtttatctcagttggtagggacaatacataatatatgta 16453356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 2692214 - 2692255
Alignment:
Q  28 tgtgagtttatctcagttgatagggacattgcataatatatg 69  Q
    |||||| ||||||||||||||| ||||| |||||||||||||    
T  2692214 tgtgagattatctcagttgatatggacaatgcataatatatg 2692255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 14945577 - 14945532
Alignment:
Q  26 cctgtgagtttatctcagttgatagggacattgcataatatatgta 71  Q
    |||||||| ||| |||||||||||| |||| |||||||||||||||    
T  14945577 cctgtgagcttagctcagttgatagagacagtgcataatatatgta 14945532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 27218897 - 27218954
Alignment:
Q  39 ctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 96  Q
    ||||||||||||||| |||||||| |||||||||||| |||  ||| |||||| ||||    
T  27218897 ctcagttgatagggatattgcatattatatgtaggagccgggattcgaaccccggaca 27218954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 7771286 - 7771330
Alignment:
Q  25 tcctgtgagtttatctcagttgatagggacattgcataatatatg 69  Q
    ||||||||| ||| ||||||||| |||||||||||||||| ||||    
T  7771286 tcctgtgagcttagctcagttgacagggacattgcataatttatg 7771330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 8330699 - 8330739
Alignment:
Q  28 tgtgagtttatctcagttgatagggacattgcataatatat 68  Q
    ||||||||||  ||||| |||||||||||||||||||||||    
T  8330699 tgtgagtttagttcagtagatagggacattgcataatatat 8330739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 29069483 - 29069523
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatg 69  Q
    ||||| ||| ||||||||||||||||| |||||||||||||    
T  29069483 gtgagcttagctcagttgatagggacaatgcataatatatg 29069523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 104
Target Start/End: Complemental strand, 52309177 - 52309102
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 104  Q
    ||||| ||| |||||||| |||||| |||||||| |||||| ||||| ||| |||| ||||||||||| |||||||    
T  52309177 gtgagcttaactcagttggtagggatattgcatactatatgcaggagtcggggttcgaaccccagacaccccactt 52309102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 31085008 - 31085050
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatgta 71  Q
    ||||||||||||||||||||| ||||| |||||||||||||||    
T  31085008 gtgagtttatctcagttgataaggacagtgcataatatatgta 31085050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 104
Target Start/End: Complemental strand, 53432807 - 53432729
Alignment:
Q  26 cctgtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 104  Q
    |||||||||||| |||||||| |||||| |||||||| |||||| ||| | ||| |||| |||||| |||| |||||||    
T  53432807 cctgtgagtttaactcagttggtagggatattgcatattatatgcaggggccggggttcgaaccccggacaccccactt 53432729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 12976663 - 12976623
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatg 69  Q
    ||||||||| ||||||||||||||||| |||||||||||||    
T  12976663 gtgagtttaactcagttgatagggacaatgcataatatatg 12976623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 104
Target Start/End: Complemental strand, 4227811 - 4227736
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 104  Q
    ||||||||| |||||||| ||||||||||||||||| |||| ||| | ||| |||| ||| || |||| |||||||    
T  4227811 gtgagtttagctcagttggtagggacattgcataatttatgcaggggtcggggttcgaactccggacaccccactt 4227736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 7827508 - 7827550
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatgta 71  Q
    ||||||||| ||||||||||| ||||| |||||||||||||||    
T  7827508 gtgagtttaactcagttgatatggacaatgcataatatatgta 7827550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 7829896 - 7829938
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatgta 71  Q
    ||||||||| ||||||||||| ||||| |||||||||||||||    
T  7829896 gtgagtttaactcagttgatatggacaatgcataatatatgta 7829938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 73
Target Start/End: Complemental strand, 35718613 - 35718579
Alignment:
Q  39 ctcagttgatagggacattgcataatatatgtagg 73  Q
    |||||||| ||||||||||||||||||||||||||    
T  35718613 ctcagttggtagggacattgcataatatatgtagg 35718579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 49443489 - 49443415
Alignment:
Q  30 tgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 104  Q
    |||||||| |||| |||  |||||||||||||||| |||| ||| | |||||||| |||||| |||| |||||||    
T  49443489 tgagtttagctcaattggcagggacattgcataatttatgcaggggccggagttcgaaccccggacaccccactt 49443415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 48251572 - 48251621
Alignment:
Q  26 cctgtgagtttatctcagttgatagggacattgcataatatatgtaggag 75  Q
    |||||||| ||| ||||||||||||||| |||||||| |||||| |||||    
T  48251572 cctgtgagcttagctcagttgatagggatattgcatattatatgcaggag 48251621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 72
Target Start/End: Original strand, 11995145 - 11995177
Alignment:
Q  40 tcagttgatagggacattgcataatatatgtag 72  Q
    ||||||||||||||||||||||||| |||||||    
T  11995145 tcagttgatagggacattgcataatttatgtag 11995177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 32776213 - 32776281
Alignment:
Q  28 tgtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 96  Q
    |||||| ||| |||||||| ||||||||||||||||| |||| ||| | ||| |||| |||||| ||||    
T  32776213 tgtgagcttagctcagttggtagggacattgcataatttatgcaggggccggggttcgaaccccggaca 32776281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 36763442 - 36763486
Alignment:
Q  39 ctcagttgatagggacattgcataatatatgtaggagacggagtt 83  Q
    |||||||| |||||||||||||||||||||| ||| | |||||||    
T  36763442 ctcagttggtagggacattgcataatatatgcaggggccggagtt 36763486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 37921059 - 37921019
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatg 69  Q
    ||||||||| ||||||||||||||| | |||||||||||||    
T  37921059 gtgagtttagctcagttgatagggataatgcataatatatg 37921019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 47098730 - 47098802
Alignment:
Q  24 ttcctgtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 96  Q
    |||| ||||| ||| |||||||| |||||| |||||||| |||||| ||| | ||| |||| |||||||||||    
T  47098730 ttcccgtgagcttagctcagttggtagggatattgcatattatatgcaggggccggggttcgaaccccagaca 47098802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 48209273 - 48209233
Alignment:
Q  28 tgtgagtttatctcagttgatagggacattgcataatatat 68  Q
    |||||||||| ||||||||||||||||| | ||||||||||    
T  48209273 tgtgagtttagctcagttgatagggacaatacataatatat 48209233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 104
Target Start/End: Original strand, 6781 - 6846
Alignment:
Q  39 ctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 104  Q
    |||||||| |||||| |||||||| |||||||||||| ||  |||| ||||||| |||||||||||    
T  6781 ctcagttggtagggatattgcatattatatgtaggagtcgaggttcgaaccccaaacatcccactt 6846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 4081 - 4014
Alignment:
Q  29 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 96  Q
    ||||| ||| |||||||| |||||| |||||||| |||||| ||||| ||| |||| |||||||||||    
T  4081 gtgagcttagctcagttggtagggatattgcatattatatgcaggagtcggggttcgaaccccagaca 4014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 3028 - 2954
Alignment:
Q  30 tgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 104  Q
    |||| ||| ||||||||| |||||||||||||||| |||| ||| | ||| |||| |||||| |||| |||||||    
T  3028 tgagcttagctcagttgaaagggacattgcataatttatgcaggggccggggttcgaaccccggacaccccactt 2954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 96
Target Start/End: Original strand, 122550 - 122616
Alignment:
Q  30 tgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 96  Q
    |||||||| || ||||| |||| |||||| |||||||||||||| | || ||||| |||||||||||    
T  122550 tgagtttaacttagttggtaggaacattgtataatatatgtaggggtcgaagttcgaaccccagaca 122616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 50073 - 50024
Alignment:
Q  24 ttcctgtgagtttatctcagttgatagggacattgcataatatatgtagg 73  Q
    |||| ||||| ||| ||||||||||||||| |||||||| ||||||||||    
T  50073 ttcccgtgagcttaactcagttgatagggatattgcatattatatgtagg 50024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0370 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0370
Description:

Target: scaffold0370; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 10552 - 10504
Alignment:
Q  27 ctgtgagtttatctcagttgatagggacattgcataatatatgtaggag 75  Q
    ||||||||||| |||| ||  ||||||||| ||||||||||||||||||    
T  10552 ctgtgagtttagctcaattattagggacatagcataatatatgtaggag 10504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0370; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 15842 - 15794
Alignment:
Q  27 ctgtgagtttatctcagttgatagggacattgcataatatatgtaggag 75  Q
    ||||||||||| |||| ||  ||||||||| ||||||||||||||||||    
T  15842 ctgtgagtttagctcaattattagggacatagcataatatatgtaggag 15794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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