View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18044_low_6 (Length: 220)
Name: NF18044_low_6
Description: NF18044
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18044_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 33251224 - 33251033
Alignment:
| Q |
15 |
aaaataaatgtcagctactccaccgtacatgtatcccttcttaatcttgggtcccacctttttcaccaactcctcccttattacattataagcttcgtcc |
114 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33251224 |
aaaacaaatgtcagctactccaccgtacatgtatcccttcttaatcttgggtcccacctttttcaccaactcctcccttattacattataagcttcgtcc |
33251125 |
T |
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| Q |
115 |
acgagataagtaaattctgatcccgaatcaatcatggtttgacctgacccaccagcgtttggtttaaaaacagaaggtggaatgttcaattt |
206 |
Q |
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| T |
33251124 |
acgagataagtaaattctgatcccgaatcaatcatggtttgacctgacccaccagcgtttggtttaaaaacagaaggtggaatgttcaattt |
33251033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 33265322 - 33265131
Alignment:
| Q |
15 |
aaaataaatgtcagctactccaccgtacatgtatcccttcttaatcttgggtcccacctttttcaccaactcctcccttattacattataagcttcgtcc |
114 |
Q |
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|||| ||||||| |||||||||||||| ||||| ||||||||||||||| || |||||||| || | ||| | || ||| ||||||||||||| ||| |
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| T |
33265322 |
aaaacaaatgtctgctactccaccgtatatgtagtccttcttaatcttggacccaacctttttaactagctcattccgtatcacattataagctttgtct |
33265223 |
T |
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| Q |
115 |
acgagataagtaaattctgatcccgaatcaatcatggtttgacctgacccaccagcgtttggtttaaaaacagaaggtggaatgttcaattt |
206 |
Q |
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| T |
33265222 |
accatgtaagagaattctgatccagaatcaataatggtttggccaaacccagtagtgtccggtttgaaaacagaaggcggaatgttcaattt |
33265131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 161
Target Start/End: Complemental strand, 29395849 - 29395808
Alignment:
| Q |
120 |
ataagtaaattctgatcccgaatcaatcatggtttgacctga |
161 |
Q |
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| T |
29395849 |
ataagtaaattctgatccggaatcaatcatggtttgacctga |
29395808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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