View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18045_high_1 (Length: 548)
Name: NF18045_high_1
Description: NF18045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18045_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 161 - 494
Target Start/End: Original strand, 27701313 - 27701646
Alignment:
| Q |
161 |
tcacatgccaagattaaagaatattaattgtcaatnnnnnnngagattaaagaaaaacaatgtacataacattggaactagcaaaagagaaaatgaactc |
260 |
Q |
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| T |
27701313 |
tcacatgccaagattaaagaatattaattttcaataaaaaaagagattaaagaaaaacaatgcacataacattggaactagcaaaagagaaaatgaactc |
27701412 |
T |
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| Q |
261 |
acatatagttgaaaccctaaaaattaatgagaaattaagaatcaaataaatgtggaccccaccttttccatccaatcaatggattccatcctgccctgca |
360 |
Q |
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| T |
27701413 |
acatatagttgaaaccctaaaaattaatgagaaattaagaatcaaataaatgtggaccccaccttttccatccaatcaatggattccatcctgccctgca |
27701512 |
T |
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| Q |
361 |
aatccaattcaccatttttcagcctattgacataatcactagcaggcaagtgatgacattctttttcaatcaaaaccttcaaattctcctcactcagcaa |
460 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27701513 |
aatccaattctccatttttcagcctattgacataatcactagcaggcaagtgatgacattctttttcaatcaaaaccttcaaattctcctcactcagcaa |
27701612 |
T |
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| Q |
461 |
tggaggtggcagcaatggtggtggcacatactca |
494 |
Q |
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||||||||||| |||||||||||||||||||||| |
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| T |
27701613 |
tggaggtggcaacaatggtggtggcacatactca |
27701646 |
T |
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