View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18045_low_10 (Length: 291)
Name: NF18045_low_10
Description: NF18045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18045_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 37319485 - 37319213
Alignment:
| Q |
1 |
aaagaactaggtaggtcgattaatgattatggaagacggggagaccttggagtaactggtaaaataggtgacttagcagggcttggactttgataatatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37319485 |
aaagaactaggtaggtcgattaatgattatggaagacggggaaaccttggagtaactggtaaaataggtgacttagcagggcttggactttgataatatt |
37319386 |
T |
|
| Q |
101 |
gtttaactgagtatacagtttgaacaatagttaaagcaaaaaggaaaatagcagcaacaagagaaacaatagcccacgggtttctaaaataagtttgaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
37319385 |
gtttaactgagtatacagtttgaacaatagttaaagcaaaaaggaaaatagcagcaacaagagagacaatagcccacgggtttctaaaataagtttgaat |
37319286 |
T |
|
| Q |
201 |
gagattagcacgccatcttttccacggtttcttgcagtaatcactcatactcatcctcaccacaccaagtact |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
37319285 |
gagattagcacgccatcttttccacggtttcttgcagtaatcactcatactcatcctcaccacatcaagtact |
37319213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 105 - 240
Target Start/End: Complemental strand, 37283634 - 37283499
Alignment:
| Q |
105 |
aactgagtatacagtttgaacaatagttaaagcaaaaaggaaaatagcagcaacaagagaaacaatagcccacgggtttctaaaataagtttgaatgaga |
204 |
Q |
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||||| ||||| |||||||| |||||| | |||||||||||| | ||||||||||||||| || |||||||| ||||| ||||||||||||||||||||| |
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| T |
37283634 |
aactgtgtatatagtttgaataatagtaagagcaaaaaggaagaaagcagcaacaagagacaccatagcccaagggttcctaaaataagtttgaatgaga |
37283535 |
T |
|
| Q |
205 |
ttagcacgccatcttttccacggtttcttgcagtaa |
240 |
Q |
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| T |
37283534 |
cttgcacgccaacttttccacggcttcttacagtaa |
37283499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 105 - 230
Target Start/End: Complemental strand, 37245172 - 37245047
Alignment:
| Q |
105 |
aactgagtatacagtttgaacaatagttaaagcaaaaaggaaaatagcagcaacaagagaaacaatagcccacgggtttctaaaataagtttgaatgaga |
204 |
Q |
| |
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||||| ||||| |||||||| |||||| | |||||||||||| | ||||||||||||||| || |||||||| ||||| ||||||||||||||||||||| |
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| T |
37245172 |
aactgtgtatatagtttgaataatagtaagagcaaaaaggaagaaagcagcaacaagagacaccatagcccaagggttcctaaaataagtttgaatgaga |
37245073 |
T |
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| Q |
205 |
ttagcacgccatcttttccacggttt |
230 |
Q |
| |
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| T |
37245072 |
cttgcacgccaacttttccaaggttt |
37245047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 149 - 252
Target Start/End: Complemental strand, 37965793 - 37965690
Alignment:
| Q |
149 |
tagcagcaacaagagaaacaatagcccacgggtttctaaaataagtttgaatgagattagcacgccatcttttccacggtttcttgcagtaatcactcat |
248 |
Q |
| |
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||||| |||||||||| || |||||||| ||| | ||||||||||| |||||||| ||||||||||||||||||| |||||||| |||| | |||||| |
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| T |
37965793 |
tagcaacaacaagagacaccatagcccaagggctcctaaaataagtacgaatgagactagcacgccatcttttccaaggtttcttatagtagtgactcat |
37965694 |
T |
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| Q |
249 |
actc |
252 |
Q |
| |
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|||| |
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|
| T |
37965693 |
actc |
37965690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 116 - 236
Target Start/End: Original strand, 16571869 - 16571989
Alignment:
| Q |
116 |
cagtttgaacaatagttaaagcaaaaaggaaaatagcagcaacaagagaaacaatagcccacgggtttctaaaataagtttgaatgagattagcacgcca |
215 |
Q |
| |
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||||||||| | |||| | ||||||||| || || ||||||||||| || || |||| ||| ||||| ||||||||||| ||| ||||||| |||||||| |
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| T |
16571869 |
cagtttgaatactagtaagagcaaaaagaaagatggcagcaacaagtgacaccatagaccaagggttcctaaaataagtgtgagtgagattggcacgcca |
16571968 |
T |
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| Q |
216 |
tcttttccacggtttcttgca |
236 |
Q |
| |
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| | ||||||||||||||||| |
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| T |
16571969 |
tttattccacggtttcttgca |
16571989 |
T |
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