View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18045_low_5 (Length: 355)
Name: NF18045_low_5
Description: NF18045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18045_low_5 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 2 - 355
Target Start/End: Original strand, 31056241 - 31056594
Alignment:
| Q |
2 |
cacatatagccacgtgattattgtttgtttactttaagctcaaacttatatatacagatctgtgaaaaatttgtaaatcatccaccaatattgattaaaa |
101 |
Q |
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| T |
31056241 |
cacatatagccacgtgattattgtttgtttgctttaagctcaaacttatatatacagatctgtgaaaaatttgtaaatcatccaccaatattgattaaaa |
31056340 |
T |
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| Q |
102 |
ataaatccagctacttgaataatggtactatccacgttgatcatgattctgtgtgtccttccaacactctctgttgctgaagatagtgaagcaaaattag |
201 |
Q |
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| T |
31056341 |
ataaatccagctacttgaatgatggtactacccacgttgatcatgattctgtgtgtccttccaacactctctgttgctgaagatagtgaagcaaaattag |
31056440 |
T |
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| Q |
202 |
cactattgaaatggaaagatagctttgacgaccaaagtcaaactctcttgtcaacttggaaaaataacacaaatccatgcaaacccaaatggagaggaat |
301 |
Q |
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| T |
31056441 |
cactattgaaatggaaagatagctttgacgaccaaagtcaaactctcttgtcaacttggaaaaataacacaaatccatgcaaacccaaatggagaggaat |
31056540 |
T |
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| Q |
302 |
taagtgtgacaaatccaatttcatttctaccataggtcttgcaaatttaggatt |
355 |
Q |
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| T |
31056541 |
taagtgtgacaaatccaatttcatttctaccataggtcttgcaaatttaggatt |
31056594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 49 - 353
Target Start/End: Original strand, 31100728 - 31101027
Alignment:
| Q |
49 |
atatatacagatctgtgaaaaatttgtaaatcatccaccaatattgattaaaaataaatccagctacttgaataatggtactatccacgttgatca---t |
145 |
Q |
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| T |
31100728 |
atatatacagatccgtgaataatttgcaaaccttccactaatatttattataaat-----ctgctacatcaataatggtactacccacgttcatcatcat |
31100822 |
T |
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| Q |
146 |
gattctgtgtgtccttccaacactctctgttgctgaagatagtgaagcaaaattagcactattgaaatggaaagatagctttgacgaccaaagtcaaact |
245 |
Q |
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| T |
31100823 |
gattctgtgtgtccttccaacactttctgtggctgaagacagtgaagcaaaattagcactcttaaaatggaaagctagctttgacaaccaaagtcaaagt |
31100922 |
T |
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| Q |
246 |
ctcttgtcaacttggaaaaataacacaaatccatgcaaacccaaatggagaggaattaagtgtgacaaatccaatttcatttctaccataggtcttgcaa |
345 |
Q |
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| T |
31100923 |
atcttgtcaacttggaaaaataccacaaatccatgca---gcaaatggagaggaattgagtgtgacaaatccaatctcatttctaccatagatcttgcaa |
31101019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 172 - 282
Target Start/End: Original strand, 31181944 - 31182054
Alignment:
| Q |
172 |
ctgttgctgaagatagtgaagcaaaattagcactattgaaatggaaagatagctttgacgaccaaagtcaaactctcttgtcaacttggaaaaataacac |
271 |
Q |
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|||| ||| |||| ||||||||||||| ||||||||| ||||||||| ||||||||||| | | ||||||| |||||||| ||||||||||||||| ||| |
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| T |
31181944 |
ctgtagctcaagacagtgaagcaaaatcagcactattaaaatggaaaaatagctttgacaatccaagtcaagctctcttgccaacttggaaaaataccac |
31182043 |
T |
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| Q |
272 |
aaatccatgca |
282 |
Q |
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| T |
31182044 |
aaatccatgca |
31182054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 210 - 335
Target Start/End: Original strand, 31138264 - 31138386
Alignment:
| Q |
210 |
aaatggaaagatagctttgacgaccaaagtcaaactctcttgtcaacttggaaaaataacacaaatccatgcaaacccaaatggagaggaattaagtgtg |
309 |
Q |
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||||||||| ||||||||||| ||||||| || |||||||||||||||||||||||| ||||||| |||||| | ||||||| ||||||| |||| |
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| T |
31138264 |
aaatggaaacatagctttgacaaccaaagccagtctctcttgtcaacttggaaaaataccacaaatacatgca---caaaatggaaaggaattttttgtg |
31138360 |
T |
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| Q |
310 |
acaaatccaatttcatttctaccata |
335 |
Q |
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| T |
31138361 |
acaactcgaaatccatttctaccata |
31138386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 153
Target Start/End: Original strand, 31181799 - 31181913
Alignment:
| Q |
41 |
tcaaacttata--tatacagatctgtgaaaaatttgtaaatcatccaccaatattgattaaaaataaatccagctacttgaataatggtactatccacgt |
138 |
Q |
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| T |
31181799 |
tcaaacttataaatatacagatccctgaaaaattcataaatcatctaacaatattcattagaaaacaatccatctacttgaataatggcactatccacat |
31181898 |
T |
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| Q |
139 |
tgatcatgattctgt |
153 |
Q |
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| T |
31181899 |
tcatcatgattctgt |
31181913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 261
Target Start/End: Original strand, 31213668 - 31213722
Alignment:
| Q |
207 |
ttgaaatggaaagatagctttgacgaccaaagtcaaactctcttgtcaacttgga |
261 |
Q |
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| T |
31213668 |
ttgaaatggaaagatagctttgacaaccacagccaagctctgctgtcaacttgga |
31213722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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