View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18045_low_7 (Length: 335)

Name: NF18045_low_7
Description: NF18045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18045_low_7
NF18045_low_7
[»] chr7 (3 HSPs)
chr7 (92-189)||(32845599-32845696)
chr7 (13-91)||(32845723-32845801)
chr7 (262-316)||(32845472-32845528)


Alignment Details
Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 92 - 189
Target Start/End: Complemental strand, 32845696 - 32845599
Alignment:
Q  92 taaattgagttagaggaagatgtcgttttgcacacgtccgtgacatatagcaaattagcaatgagtagtgggcagctctttattgatgataatatatg 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32845696 taaattgagttagaggaagatgtcgttttgcacacgtccgtgacatatagcaaattagcaatgagtagtgggcagctctttattgatgataatatatg 32845599  T

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Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 32845801 - 32845723
Alignment:
Q  13 aatattagatattttcatagagaaagggtttgccattttaacnnnnnnncaactttatctttctatttaaagaagaaaa 91  Q
    ||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  32845801 aatattagatattttcatagagaaagggtttgccattttaactttttttcaactttatctttctatttaaagaagaaaa 32845723  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 262 - 316
Target Start/End: Complemental strand, 32845528 - 32845472
Alignment:
Q  262 atctatacttagtatttgctacttttacatttgtg--tgtgagtgtataatgtgtgt 316  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  32845528 atctatacttagtatttgctacttttacatttgtgtatgtgagtgtataatgtgtgt 32845472  T

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