View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18045_low_9 (Length: 313)
Name: NF18045_low_9
Description: NF18045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18045_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 11345570 - 11345871
Alignment:
| Q |
1 |
tgtgagatcgaaaatgaactccagacatggtgcaaataacaacatcaactagtttcacagcatctaccaaactttgatgattagagaaagaaccttccac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11345570 |
tgtgagatcgaaaatgaactccagacatggtgcaaataacaacatcaactagtttcacagcatctaccaaactttgatgattagagaaagaaccttccac |
11345669 |
T |
|
| Q |
101 |
aagatgagcacctagtttcttatatgaaagaagcatttgcaccttctcagtttcaagccctatatctagacgttgaagtacataggtttcatgaccttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11345670 |
aagatgagcacctagtttcttatatgaaagaagcatttgcaccttctcagtttcaagccctatatctagacgttgaagtacataggtttcatgaccttgt |
11345769 |
T |
|
| Q |
201 |
tctaaacttgccttcactattctcctcccaatatacccggtaccccccacaactagaaccttactctttcccattattgattttctctcttgtagcctat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11345770 |
tctaaacttgccttcactattctcctcccaatatacccagtaccccccacaactagaaccttactctttcccattattgattttctctcttgtagcctat |
11345869 |
T |
|
| Q |
301 |
ag |
302 |
Q |
| |
|
|| |
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| T |
11345870 |
ag |
11345871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 11310897 - 11311194
Alignment:
| Q |
1 |
tgtgagatcgaaaatgaactccagacatggtgcaaataacaacatcaactagtttcacagcatctaccaaactttgatgattagagaaagaaccttccac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
11310897 |
tgtgagatcgaaaatgaactccagacatggtgcaaataacaacatcaactagtttcacagcatctaccaaactttgatgattagaaaaagaaccttccac |
11310996 |
T |
|
| Q |
101 |
aagatgagcacctagtttcttatatgaaagaagcatttgcaccttctcagtttcaagccctatatctagacgttgaagtacataggtttcatgaccttgt |
200 |
Q |
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|
||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
11310997 |
aagatgagcacctagtttcttgaatgaaagaagcatttgcactttctcagtttcaagccctatatctggacgttgaagtacataggtttcatgaccttgt |
11311096 |
T |
|
| Q |
201 |
tctaaacttgccttcactattctcctcccaatatacccggtaccccccacaactagaaccttactctttcccattattgattttctctcttgtagcct |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
11311097 |
tctaaacttgccttcactattctcctcccaatatacccagttccccccacaactagaaccttactctttcccattattgtttttctctcttgtagcct |
11311194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 275
Target Start/End: Original strand, 30182457 - 30182633
Alignment:
| Q |
99 |
acaagatgagcacctagtttcttatatgaaagaagcatttgcaccttctcagtttcaagccctatatctagacgttgaagtacataggtttcatgacctt |
198 |
Q |
| |
|
|||| |||||||||| ||||||| |||| ||||| |||| | ||||||| ||| ||| || | ||| | | ||||| |||||||||||||| |||| |
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| T |
30182457 |
acaatatgagcaccttgtttcttgaatgatagaagtctttgaagcttctcaatttgaagtcccaactctggcctttgaatcacataggtttcatgtcctt |
30182556 |
T |
|
| Q |
199 |
gttctaaacttgccttcactattctcctcccaatatacccggtaccccccacaactagaaccttactctttcccatt |
275 |
Q |
| |
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||||||||||||||||||||||||| || || || || || || || ||||| |||| |||||| |||||| ||||| |
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| T |
30182557 |
gttctaaacttgccttcactattcttcttcctatgtatcctgttcctcccactactaaaaccttgctcttttccatt |
30182633 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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