View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18046_high_10 (Length: 224)
Name: NF18046_high_10
Description: NF18046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18046_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 56046597 - 56046808
Alignment:
| Q |
1 |
ccttggacttgtcccaaataccgagtgacatttgatgcatctgttatatgggggttaatcggaccgaagcggctattcggaccaggtggattgtaccgaa |
100 |
Q |
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| T |
56046597 |
ccttggacttgtcccaaataccgagtgacatttgatgcatctgttatatgggggttaatcggaccgaagcggctattcggaccaggtggattgtaccgaa |
56046696 |
T |
|
| Q |
101 |
accttgtatggctattcttggttggagcagtgttgccagttcctgtttgggtgtttagcaaaatctaccctaacaagaaatggattcctctgataaacat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56046697 |
accttgtatggctattcttggttggagcagtgttgccagttcctgtttgggtgtttagcaaaatctaccctaacaagaaatggattcctctgataaacat |
56046796 |
T |
|
| Q |
201 |
accagttatatc |
212 |
Q |
| |
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|||||||||||| |
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| T |
56046797 |
accagttatatc |
56046808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 55707902 - 55708116
Alignment:
| Q |
1 |
ccttggacttgtcccaaataccgagtgacatttgatgcatctgttatatgggggttaatcggaccgaagcggctat---tcggaccaggtggattgtacc |
97 |
Q |
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|||| |||||||||||||||| ||||| |||||||||||||| ||||||| | || || |||| | |||||||| | ||||| ||||||||||| | |
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| T |
55707902 |
ccttcgacttgtcccaaatacagagtggcatttgatgcatcttttatatgcagtttgatttgaccaaggcggctataatttggacccggtggattgtatc |
55708001 |
T |
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| Q |
98 |
gaaaccttgtatggctattcttggttggagcagtgttgccagttcctgtttgggtgtttagcaaaatctaccctaacaagaaatggattcctctgataaa |
197 |
Q |
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| T |
55708002 |
gaaaccttgtatggttattctttattggggctgtgttaccagttcttgtttaggcattcagcaaaatatatgctgacaagaaatgcttttctctgataaa |
55708101 |
T |
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| Q |
198 |
cataccagttatatc |
212 |
Q |
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||||||||||||||| |
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| T |
55708102 |
cataccagttatatc |
55708116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 47294808 - 47294947
Alignment:
| Q |
1 |
ccttggacttgtcccaaataccgagtgacatttgatgcatctgttatatgggggttaatcggaccgaagcggctattcggaccaggtggattgtaccgaa |
100 |
Q |
| |
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||||| ||||| ||||||||| ||||||||||||||||||||||||| ||| | | || || | || ||||||||| ||||| ||||||||||| ||| |
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| T |
47294808 |
ccttgtacttgccccaaatacagagtgacatttgatgcatctgttatttggtgttcgattgggctgaggcggctatttggacccggtggattgtattgaa |
47294907 |
T |
|
| Q |
101 |
accttgtatggctattcttggttggagcagtgttgccagt |
140 |
Q |
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|||||||||||||||||||| ||||||| ||||| ||||| |
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| T |
47294908 |
accttgtatggctattcttgattggagctgtgttaccagt |
47294947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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