View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18046_low_1 (Length: 871)

Name: NF18046_low_1
Description: NF18046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18046_low_1
NF18046_low_1
[»] chr7 (7 HSPs)
chr7 (35-853)||(25026467-25027324)
chr7 (253-319)||(1706598-1706664)
chr7 (269-311)||(16706713-16706755)
chr7 (269-311)||(17680949-17680991)
chr7 (269-311)||(35016093-35016135)
chr7 (269-317)||(12287091-12287139)
chr7 (269-311)||(35015935-35015977)
[»] chr1 (12 HSPs)
chr1 (256-317)||(43728655-43728716)
chr1 (269-311)||(48379485-48379527)
chr1 (256-317)||(8259508-8259569)
chr1 (254-310)||(14624965-14625021)
chr1 (269-311)||(15342902-15342944)
chr1 (285-317)||(33016403-33016435)
chr1 (269-317)||(47024318-47024366)
chr1 (269-309)||(51776556-51776596)
chr1 (269-311)||(9694120-9694162)
chr1 (269-311)||(25389758-25389800)
chr1 (278-315)||(42693542-42693579)
chr1 (269-306)||(48941596-48941633)
[»] chr3 (4 HSPs)
chr3 (269-317)||(18090375-18090423)
chr3 (269-317)||(26952578-26952626)
chr3 (269-306)||(37333185-37333222)
chr3 (338-396)||(46940962-46941020)
[»] chr4 (11 HSPs)
chr4 (269-317)||(16529841-16529889)
chr4 (269-317)||(36755123-36755171)
chr4 (253-311)||(12832468-12832526)
chr4 (269-319)||(38476301-38476351)
chr4 (269-317)||(45549204-45549252)
chr4 (276-309)||(55693130-55693163)
chr4 (273-317)||(3534073-3534117)
chr4 (271-319)||(15024721-15024769)
chr4 (330-396)||(6866007-6866073)
chr4 (269-311)||(56192225-56192267)
chr4 (269-306)||(37996916-37996953)
[»] chr2 (5 HSPs)
chr2 (269-319)||(9032740-9032790)
chr2 (256-311)||(840329-840384)
chr2 (272-312)||(5732573-5732613)
chr2 (272-312)||(5803091-5803131)
chr2 (276-317)||(19494750-19494791)
[»] chr8 (3 HSPs)
chr8 (269-317)||(8845568-8845616)
chr8 (279-320)||(43417931-43417971)
chr8 (272-311)||(41407210-41407249)
[»] chr6 (6 HSPs)
chr6 (269-317)||(32183786-32183834)
chr6 (269-310)||(22746984-22747025)
chr6 (269-317)||(20969802-20969850)
chr6 (279-317)||(2912701-2912739)
chr6 (273-311)||(15135085-15135123)
chr6 (279-317)||(15489397-15489435)
[»] chr5 (6 HSPs)
chr5 (269-317)||(9622416-9622464)
chr5 (269-314)||(35377976-35378021)
chr5 (269-311)||(27903562-27903604)
chr5 (269-311)||(43100986-43101028)
chr5 (269-306)||(19279440-19279477)
chr5 (272-317)||(23418875-23418920)
[»] scaffold0355 (1 HSPs)
scaffold0355 (269-319)||(2796-2846)
[»] scaffold0001 (1 HSPs)
scaffold0001 (269-311)||(428296-428338)
[»] scaffold0009 (1 HSPs)
scaffold0009 (339-421)||(102967-103049)
[»] scaffold1940 (1 HSPs)
scaffold1940 (276-317)||(567-608)


Alignment Details
Target: chr7 (Bit Score: 612; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 612; E-Value: 0
Query Start/End: Original strand, 35 - 853
Target Start/End: Original strand, 25026467 - 25027324
Alignment:
Q  35 gctagggaccacaaccatttgtcaaattgtcgtcataattatcatacttatattaattatttcaaattcctcttcacaaagtaattatttcaaattcaaa 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25026467 gctagggaccacaaccatttgtcaaattgtcgtcataattatcatacttatattaattatttcaaattcctcttcacaaagtaattatttcaaattcaaa 25026566  T
Q  135 tctaattaattaacaccaaactggttgataagcctc-----tgaaaagaatttttgaagtggagttaggtttctctctatgttgattgagtgaggatagg 229  Q
    ||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  25026567 tctaattaattaacaccaaactggttgataagcctcaaatatgaaaagaatttttgaagtggagttaggttcctctctatgttgcttgagtgaggatagg 25026666  T
Q  230 agac--gagattttaa----------aatatca---tgttaagaccatttgcattggtgggtgcttcatctatttagcaccacattaaataggcacctcc 314  Q
    ||||  ||||||||||          ||| | |   | | | ||||||| | | ||||||||||||||| |||||||||||| ||||||||| |||||||    
T  25026667 agacaagagattttaatggagggagaaattttaaaatatcatgaccattcgtaatggtgggtgcttcatttatttagcaccatattaaatagacacctcc 25026766  T
Q  315 attataaaaaggaacatatcaaagattacttacacgtcaatagaaggtaaacaagcaacaagttgtgccgctagatctttttagattgcaaaactaatcc 414  Q
    ||| | |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  25026767 attgtgaaaaggaacatatcaaagattacttacacgtcaatagaagataaacaaccaacaagttgtgccgctagatctttttagattgcaaaactaatcc 25026866  T
Q  415 tcataaagattttttattttaacaaatgtttaaattttgttaagtgataggccaaattgatagccatatatcattt---------------------aat 493  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                     |||    
T  25026867 tcataaagattttttattttaacaaatgtttaaattttgttaagtgataggccaaattgatagccatatatcattttaaagaagaaatcgattatttaat 25026966  T
Q  494 tattccactttaaaatttaacaagttggaatacacttccaaattgcaattacaaattacatccaagagtgactctgactacctattcaaaatacaccaaa 593  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25026967 tattccactttaaaatttaacaagttggaatacacttccaaattgcaattacaaattacatccaagagtgactctgactacctattcaaaatacaccaaa 25027066  T
Q  594 tatttaggaattcaaatgaaaactaaaactacattttactccccaagaaattgtgggaccatttccatatcccacaagattgtagaatatttcacaatat 693  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25027067 tatttaggaattcaaatgaaaactaaaactacattttactccccaagaaattgtgggaccatttccatatcccacaagattgtagaatatttcacaatat 25027166  T
Q  694 actctattataaccatatattcattattagttttgtcatatgcataagtctaactgtcatataattactcatcacctatagggatcacatggttgaagta 793  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||    
T  25027167 actctattataaccatatattcattattacttttgtcacatgcataagtctaactgtcatataggt-ctcatcacctatagggatcacatggttgaagta 25027265  T
Q  794 gcaacaagctgattcactctttgttttgttcaaaatgaatgagaagtgagaattcagaat 853  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  25027266 gcaacaagctgattcac-ctttgttttgttcaaaatgaatgagaagtgagaattcagaat 25027324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 253 - 319
Target Start/End: Complemental strand, 1706664 - 1706598
Alignment:
Q  253 ttaagaccatttgcattggtgggtgcttcatctatttagcaccacattaaataggcacctccattat 319  Q
    |||||||||||  || ||||||||||||||||||||  ||||||||||||||||||||| |||||||    
T  1706664 ttaagaccattaacaatggtgggtgcttcatctattcggcaccacattaaataggcacccccattat 1706598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 269 - 311
Target Start/End: Complemental strand, 16706755 - 16706713
Alignment:
Q  269 tggtgggtgcttcatctatttagcaccacattaaataggcacc 311  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  16706755 tggtgggtgcttcacctatttagcaccacattaaataggcacc 16706713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 269 - 311
Target Start/End: Complemental strand, 17680991 - 17680949
Alignment:
Q  269 tggtgggtgcttcatctatttagcaccacattaaataggcacc 311  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  17680991 tggtgggtgcttcacctatttagcaccacattaaataggcacc 17680949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 269 - 311
Target Start/End: Complemental strand, 35016135 - 35016093
Alignment:
Q  269 tggtgggtgcttcatctatttagcaccacattaaataggcacc 311  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  35016135 tggtgggtgcttcatctatttagcaccatattaaataggcacc 35016093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 269 - 317
Target Start/End: Original strand, 12287091 - 12287139
Alignment:
Q  269 tggtgggtgcttcatctatttagcaccacattaaataggcacctccatt 317  Q
    |||||||||||| | ||||||| ||||||||||||||||||||||||||    
T  12287091 tggtgggtgctttacctatttaacaccacattaaataggcacctccatt 12287139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 269 - 311
Target Start/End: Complemental strand, 35015977 - 35015935
Alignment:
Q  269 tggtgggtgcttcatctatttagcaccacattaaataggcacc 311  Q
    ||||||||| |||||||||||||||||| ||||||||||||||    
T  35015977 tggtgggtgtttcatctatttagcaccatattaaataggcacc 35015935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 4e-19; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 256 - 317
Target Start/End: Complemental strand, 43728716 - 43728655
Alignment:
Q  256 agaccatttgcattggtgggtgcttcatctatttagcaccacattaaataggcacctccatt 317  Q
    ||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  43728716 agaccatttacaatggtggatgcttcatctatttagcaccacattaaataggcacctccatt 43728655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 269 - 311
Target Start/End: Original strand, 48379485 - 48379527
Alignment:
Q  269 tggtgggtgcttcatctatttagcaccacattaaataggcacc 311  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  48379485 tggtgggtgcttcacctatttagcaccacattaaataggcacc 48379527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 256 - 317
Target Start/End: Complemental strand, 8259569 - 8259508
Alignment:
Q  256 agaccatttgcattggtgggtgcttcatctatttagcaccacattaaataggcacctccatt 317  Q
    ||||||| | || ||||||||||||||||||||||||| || |||||||||||||| |||||    
T  8259569 agaccatctacaatggtgggtgcttcatctatttagcatcatattaaataggcacccccatt 8259508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 254 - 310
Target Start/End: Original strand, 14624965 - 14625021
Alignment:
Q  254 taagaccatttgcattggtgggtgcttcatctatttagcaccacattaaataggcac 310  Q
    ||||||||| | || |||||||||||||| |||||||||||||||||||| ||||||    
T  14624965 taagaccatctacaatggtgggtgcttcacctatttagcaccacattaaagaggcac 14625021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 269 - 311
Target Start/End: Complemental strand, 15342944 - 15342902
Alignment:
Q  269 tggtgggtgcttcatctatttagcaccacattaaataggcacc 311  Q
    |||||||||||||| |||||||||||||||||||||| |||||    
T  15342944 tggtgggtgcttcacctatttagcaccacattaaataagcacc 15342902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 285 - 317
Target Start/End: Original strand, 33016403 - 33016435
Alignment:
Q  285 tatttagcaccacattaaataggcacctccatt 317  Q
    |||||||||||||||||||||||||||||||||    
T  33016403 tatttagcaccacattaaataggcacctccatt 33016435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 269 - 317
Target Start/End: Original strand, 47024318 - 47024366
Alignment:
Q  269 tggtgggtgcttcatctatttagcaccacattaaataggcacctccatt 317  Q
    |||||||||| | ||||||||  ||||||||||||||||||||||||||    
T  47024318 tggtgggtgcgtaatctatttcacaccacattaaataggcacctccatt 47024366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 269 - 309
Target Start/End: Original strand, 51776556 - 51776596
Alignment:
Q  269 tggtgggtgcttcatctatttagcaccacattaaataggca 309  Q
    ||||||||| |||| ||||||||||||||||||||||||||    
T  51776556 tggtgggtgtttcacctatttagcaccacattaaataggca 51776596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 269 - 311
Target Start/End: Complemental strand, 9694162 - 9694120
Alignment:
Q  269 tggtgggtgcttcatctatttagcaccacattaaataggcacc 311  Q
    |||||||||||||| ||||||||||||| | ||||||||||||    
T  9694162 tggtgggtgcttcacctatttagcaccatactaaataggcacc 9694120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 269 - 311
Target Start/End: Complemental strand, 25389800 - 25389758
Alignment:
Q  269 tggtgggtgcttcatctatttagcaccacattaaataggcacc 311  Q
    |||||||||||| | ||||||||||||||||||||||| ||||    
T  25389800 tggtgggtgcttaacctatttagcaccacattaaatagacacc 25389758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 42693579 - 42693542
Alignment:
Q  278 cttcatctatttagcaccacattaaataggcacctcca 315  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  42693579 cttcatttatttagcaccatattaaataggcacctcca 42693542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 269 - 306
Target Start/End: Complemental strand, 48941633 - 48941596
Alignment:
Q  269 tggtgggtgcttcatctatttagcaccacattaaatag 306  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  48941633 tggtgggtgtttcatctatttagcaccatattaaatag 48941596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 269 - 317
Target Start/End: Original strand, 18090375 - 18090423
Alignment:
Q  269 tggtgggtgcttcatctatttagcaccacattaaataggcacctccatt 317  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  18090375 tggtggatgcttcatctatttagcaccacattaaataggcacctccatt 18090423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 269 - 317
Target Start/End: Complemental strand, 26952626 - 26952578
Alignment:
Q  269 tggtgggtgcttcatctatttagcaccacattaaataggcacctccatt 317  Q
    |||||||||||||| ||||||||||||| ||||||||| ||||||||||    
T  26952626 tggtgggtgcttcacctatttagcaccatattaaatagacacctccatt 26952578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 269 - 306
Target Start/End: Original strand, 37333185 - 37333222
Alignment:
Q  269 tggtgggtgcttcatctatttagcaccacattaaatag 306  Q
    |||||||||||||| |||||||||||||||||||||||    
T  37333185 tggtgggtgcttcacctatttagcaccacattaaatag 37333222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 338 - 396
Target Start/End: Complemental strand, 46941020 - 46940962
Alignment:
Q  338 gattacttacacgtcaatagaaggtaaacaagcaacaagttgtgccgctagatcttttt 396  Q
    ||||| |||||| | ||||||||||||||| |||||||||||  ||||||| |||||||    
T  46941020 gattaattacacatgaatagaaggtaaacaggcaacaagttgcaccgctaggtcttttt 46940962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 269 - 317
Target Start/End: Original strand, 16529841 - 16529889
Alignment:
Q  269 tggtgggtgcttcatctatttagcaccacattaaataggcacctccatt 317  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||    
T  16529841 tggtgggtgcttcacctatttagcaccacattaaataggcacccccatt 16529889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 269 - 317
Target Start/End: Original strand, 36755123 - 36755171
Alignment:
Q  269 tggtgggtgcttcatctatttagcaccacattaaataggcacctccatt 317  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  36755123 tggtgggtgcttcatctatttagcaccatattaaatagacacctccatt 36755171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 12832526 - 12832468
Alignment:
Q  253 ttaagaccatttgcattggtgggtgcttcatctatttagcaccacattaaataggcacc 311  Q
    |||||||||| | || |||||||||||||| ||||||||||||||||||||| ||||||    
T  12832526 ttaagaccatctacaatggtgggtgcttcacctatttagcaccacattaaatcggcacc 12832468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 269 - 319
Target Start/End: Complemental strand, 38476351 - 38476301
Alignment:
Q  269 tggtgggtgcttcatctatttagcaccacattaaataggcacctccattat 319  Q
    |||||||||||||| ||||||||||||||||||||||| |||| |||||||    
T  38476351 tggtgggtgcttcacctatttagcaccacattaaatagacacccccattat 38476301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 269 - 317
Target Start/End: Complemental strand, 45549252 - 45549204
Alignment:
Q  269 tggtgggtgcttcatctatttagcaccacattaaataggcacctccatt 317  Q
    ||||||||| |||| ||||||||||||||||||||||| ||||||||||    
T  45549252 tggtgggtgtttcacctatttagcaccacattaaatagacacctccatt 45549204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 276 - 309
Target Start/End: Complemental strand, 55693163 - 55693130
Alignment:
Q  276 tgcttcatctatttagcaccacattaaataggca 309  Q
    ||||||||||||||||||||||||||||||||||    
T  55693163 tgcttcatctatttagcaccacattaaataggca 55693130  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 273 - 317
Target Start/End: Complemental strand, 3534117 - 3534073
Alignment:
Q  273 gggtgcttcatctatttagcaccacattaaataggcacctccatt 317  Q
    |||||||||| |||||||||| ||||||||||||||||| |||||    
T  3534117 gggtgcttcacctatttagcatcacattaaataggcacccccatt 3534073  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 271 - 319
Target Start/End: Complemental strand, 15024769 - 15024721
Alignment:
Q  271 gtgggtgcttcatctatttagcaccacattaaataggcacctccattat 319  Q
    |||| ||||||| |||||||||| || ||||||||||||||||||||||    
T  15024769 gtggatgcttcacctatttagcatcatattaaataggcacctccattat 15024721  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 330 - 396
Target Start/End: Complemental strand, 6866073 - 6866007
Alignment:
Q  330 atatcaaagattacttacacgtcaatagaaggtaaacaagcaacaagttgtgccgctagatcttttt 396  Q
    ||||||| |||||||||||| | |||||||| |||| |  |||||||||||| ||||||| ||||||    
T  6866073 atatcaatgattacttacacatgaatagaagataaaaagacaacaagttgtgtcgctagaccttttt 6866007  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 269 - 311
Target Start/End: Original strand, 56192225 - 56192267
Alignment:
Q  269 tggtgggtgcttcatctatttagcaccacattaaataggcacc 311  Q
    |||||||||||| | ||||||| ||||||||||||||||||||    
T  56192225 tggtgggtgctttacctatttaacaccacattaaataggcacc 56192267  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 269 - 306
Target Start/End: Original strand, 37996916 - 37996953
Alignment:
Q  269 tggtgggtgcttcatctatttagcaccacattaaatag 306  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  37996916 tggtggatgcttcttctatttagcaccacattaaatag 37996953  T

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Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 269 - 319
Target Start/End: Complemental strand, 9032790 - 9032740
Alignment:
Q  269 tggtgggtgcttcatctatttagcaccacattaaataggcacctccattat 319  Q
    |||||||||||||| ||||||| |||||||||||||||||||||| |||||    
T  9032790 tggtgggtgcttcacctatttaacaccacattaaataggcacctctattat 9032740  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 256 - 311
Target Start/End: Complemental strand, 840384 - 840329
Alignment:
Q  256 agaccatttgcattggtgggtgcttcatctatttagcaccacattaaataggcacc 311  Q
    ||||||||  || |||||||||||||| ||| ||||||||||||||||||||||||    
T  840384 agaccattcacaatggtgggtgcttcacctacttagcaccacattaaataggcacc 840329  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 5732573 - 5732613
Alignment:
Q  272 tgggtgcttcatctatttagcaccacattaaataggcacct 312  Q
    ||||||||| | |||||||||||||||||||||||||||||    
T  5732573 tgggtgcttaacctatttagcaccacattaaataggcacct 5732613  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 5803091 - 5803131
Alignment:
Q  272 tgggtgcttcatctatttagcaccacattaaataggcacct 312  Q
    ||||||||| | |||||||||||||||||||||||||||||    
T  5803091 tgggtgcttaacctatttagcaccacattaaataggcacct 5803131  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 276 - 317
Target Start/End: Original strand, 19494750 - 19494791
Alignment:
Q  276 tgcttcatctatttagcaccacattaaataggcacctccatt 317  Q
    |||||||||||||||| |||| |||||||||||||| |||||    
T  19494750 tgcttcatctatttagtaccatattaaataggcacccccatt 19494791  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 269 - 317
Target Start/End: Original strand, 8845568 - 8845616
Alignment:
Q  269 tggtgggtgcttcatctatttagcaccacattaaataggcacctccatt 317  Q
    |||||||||||| | ||||||||||||||||||||||||||| ||||||    
T  8845568 tggtgggtgctttacctatttagcaccacattaaataggcacttccatt 8845616  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 279 - 320
Target Start/End: Complemental strand, 43417971 - 43417931
Alignment:
Q  279 ttcatctatttagcaccacattaaataggcacctccattata 320  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  43417971 ttcatctatttagcaccacattaaataggca-ctccattata 43417931  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 272 - 311
Target Start/End: Original strand, 41407210 - 41407249
Alignment:
Q  272 tgggtgcttcatctatttagcaccacattaaataggcacc 311  Q
    ||||||||||||||||||| ||||| ||||||||||||||    
T  41407210 tgggtgcttcatctatttaacaccatattaaataggcacc 41407249  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 269 - 317
Target Start/End: Original strand, 32183786 - 32183834
Alignment:
Q  269 tggtgggtgcttcatctatttagcaccacattaaataggcacctccatt 317  Q
    ||||||||||||||||||||||||| || |||||||||||||| |||||    
T  32183786 tggtgggtgcttcatctatttagcatcatattaaataggcacccccatt 32183834  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 269 - 310
Target Start/End: Original strand, 22746984 - 22747025
Alignment:
Q  269 tggtgggtgcttcatctatttagcaccacattaaataggcac 310  Q
    |||||||||||||||||||||||||| | |||||||||||||    
T  22746984 tggtgggtgcttcatctatttagcactatattaaataggcac 22747025  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 269 - 317
Target Start/End: Complemental strand, 20969850 - 20969802
Alignment:
Q  269 tggtgggtgcttcatctatttagcaccacattaaataggcacctccatt 317  Q
    |||||||| ||||| ||||||||||||||||||| |||||||| |||||    
T  20969850 tggtgggtacttcacctatttagcaccacattaagtaggcacccccatt 20969802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 279 - 317
Target Start/End: Original strand, 2912701 - 2912739
Alignment:
Q  279 ttcatctatttagcaccacattaaataggcacctccatt 317  Q
    |||| |||||||| |||||||||||||||||||||||||    
T  2912701 ttcacctatttagaaccacattaaataggcacctccatt 2912739  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 273 - 311
Target Start/End: Complemental strand, 15135123 - 15135085
Alignment:
Q  273 gggtgcttcatctatttagcaccacattaaataggcacc 311  Q
    |||| ||||| ||||||||||||||||||||||||||||    
T  15135123 gggtacttcacctatttagcaccacattaaataggcacc 15135085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 279 - 317
Target Start/End: Original strand, 15489397 - 15489435
Alignment:
Q  279 ttcatctatttagcaccacattaaataggcacctccatt 317  Q
    |||| |||||||||||||||||||||||||||| |||||    
T  15489397 ttcacctatttagcaccacattaaataggcacccccatt 15489435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 269 - 317
Target Start/End: Complemental strand, 9622464 - 9622416
Alignment:
Q  269 tggtgggtgcttcatctatttagcaccacattaaataggcacctccatt 317  Q
    |||||||||||||| ||||||||||||||||||||||| |||| |||||    
T  9622464 tggtgggtgcttcacctatttagcaccacattaaatagacacccccatt 9622416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 269 - 314
Target Start/End: Complemental strand, 35378021 - 35377976
Alignment:
Q  269 tggtgggtgcttcatctatttagcaccacattaaataggcacctcc 314  Q
    |||||||||||||||||||||| || || |||||||||||||||||    
T  35378021 tggtgggtgcttcatctatttaacatcatattaaataggcacctcc 35377976  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 269 - 311
Target Start/End: Original strand, 27903562 - 27903604
Alignment:
Q  269 tggtgggtgcttcatctatttagcaccacattaaataggcacc 311  Q
    ||||||||| |||| ||||||||||| ||||||||||||||||    
T  27903562 tggtgggtgtttcacctatttagcactacattaaataggcacc 27903604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 269 - 311
Target Start/End: Complemental strand, 43101028 - 43100986
Alignment:
Q  269 tggtgggtgcttcatctatttagcaccacattaaataggcacc 311  Q
    |||||||||||| | |||||||||||||||||||||| |||||    
T  43101028 tggtgggtgcttaacctatttagcaccacattaaataagcacc 43100986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 269 - 306
Target Start/End: Original strand, 19279440 - 19279477
Alignment:
Q  269 tggtgggtgcttcatctatttagcaccacattaaatag 306  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  19279440 tggtgggtgcttcacctatttagcatcacattaaatag 19279477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 272 - 317
Target Start/End: Original strand, 23418875 - 23418920
Alignment:
Q  272 tgggtgcttcatctatttagcaccacattaaataggcacctccatt 317  Q
    ||||||||||||||||||| ||||  |||||||||||||| |||||    
T  23418875 tgggtgcttcatctatttaacaccgtattaaataggcacccccatt 23418920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 269 - 319
Target Start/End: Complemental strand, 2846 - 2796
Alignment:
Q  269 tggtgggtgcttcatctatttagcaccacattaaataggcacctccattat 319  Q
    ||||||||| |||| ||||||||||||| ||||||||||||| ||||||||    
T  2846 tggtgggtgtttcacctatttagcaccatattaaataggcacttccattat 2796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 269 - 311
Target Start/End: Original strand, 428296 - 428338
Alignment:
Q  269 tggtgggtgcttcatctatttagcaccacattaaataggcacc 311  Q
    |||||||||||||| ||||||||||||| ||||||||||||||    
T  428296 tggtgggtgcttcacctatttagcaccagattaaataggcacc 428338  T

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Target: scaffold0009 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 339 - 421
Target Start/End: Original strand, 102967 - 103049
Alignment:
Q  339 attacttacacgtcaatagaaggtaaacaagcaacaagttgtgccgctagatctttttagattgcaaaactaatcctcataaa 421  Q
    |||| |||||| | ||||||||| || |  ||||||||||| ||||||||| |||||| ||| ||||||| ||||||| ||||    
T  102967 attatttacacttgaatagaaggcaagcgggcaacaagttgcgccgctagacctttttggatggcaaaaccaatcctcgtaaa 103049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1940 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold1940
Description:

Target: scaffold1940; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 276 - 317
Target Start/End: Original strand, 567 - 608
Alignment:
Q  276 tgcttcatctatttagcaccacattaaataggcacctccatt 317  Q
    ||||||| ||||||| |||||||||||||||||||| |||||    
T  567 tgcttcacctatttaacaccacattaaataggcacccccatt 608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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