View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18046_low_2 (Length: 480)

Name: NF18046_low_2
Description: NF18046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18046_low_2
NF18046_low_2
[»] chr6 (5 HSPs)
chr6 (207-446)||(33216902-33217150)
chr6 (16-135)||(33216711-33216830)
chr6 (229-284)||(31668790-31668845)
chr6 (229-274)||(3217305-3217350)
chr6 (428-468)||(32171560-32171600)
[»] chr8 (1 HSPs)
chr8 (229-279)||(12972766-12972816)
[»] chr2 (3 HSPs)
chr2 (235-289)||(2400072-2400126)
chr2 (418-464)||(34927046-34927092)
chr2 (243-297)||(35809857-35809911)
[»] chr1 (1 HSPs)
chr1 (430-468)||(5924108-5924146)


Alignment Details
Target: chr6 (Bit Score: 177; Significance: 3e-95; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 207 - 446
Target Start/End: Original strand, 33216902 - 33217150
Alignment:
Q  207 aaacttttaggctttgtttggatatagtataagcaattatcatataagtccttatgtagaagttatttcaataccaaagataaaagaaaataaatatgct 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33216902 aaacttttaggctttgtttggatatagtataagcaattatcatataagtccttatgtagaagttatttcaataccaaagataaaagaaaataaatatgct 33217001  T
Q  307 tttatat---------gttattttcacaagctattctggaaagcatatgtaaataagctccataggcggttatcaataagatgaaaatatcatatgaatc 397  Q
    |||||||         ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  33217002 tttatataagttacacgttatgttcacaagctattctggaaagcatatgtaaataagctccataagcggttatcaataagatgaaaatatcacatgaatc 33217101  T
Q  398 ttttataagttgnnnnnnnnataaattcttccaaacagtcttacaaatg 446  Q
    | ||||||||||        |||||||||||||||||||||||||||||    
T  33217102 tgttataagttgttttttttataaattcttccaaacagtcttacaaatg 33217150  T

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Target: chr6; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 16 - 135
Target Start/End: Original strand, 33216711 - 33216830
Alignment:
Q  16 tttttcagatgccattgatatgagaagaagttccaaccaacaaggttctgttgcgaaagatcaaacaaatcctttgaatgagaagaagaagtctcagata 115  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33216711 tttttcagatgccattgatatgagaaaaagttccaaccaacaaggttctgttgcgaaagatcaaacaaatcctttgaacgagaagaagaagtctcagata 33216810  T
Q  116 tctggttcagctgcaaagta 135  Q
    ||||||||||||||||||||    
T  33216811 tctggttcagctgcaaagta 33216830  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 284
Target Start/End: Complemental strand, 31668845 - 31668790
Alignment:
Q  229 tatagtataagcaattatcatataagtccttatgtagaagttatttcaataccaaa 284  Q
    ||||| ||||||||||||||||||||| |||||||| ||| |||||| ||| ||||    
T  31668845 tatagcataagcaattatcatataagtgcttatgtataagctatttctataacaaa 31668790  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 274
Target Start/End: Complemental strand, 3217350 - 3217305
Alignment:
Q  229 tatagtataagcaattatcatataagtccttatgtagaagttattt 274  Q
    |||||||||||| |||||||||||||| |||||||| ||| |||||    
T  3217350 tatagtataagcgattatcatataagtgcttatgtataagctattt 3217305  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 428 - 468
Target Start/End: Original strand, 32171560 - 32171600
Alignment:
Q  428 ccaaacagtcttacaaatgcttatgtctgtaaataagttca 468  Q
    |||| |||||| ||||||||||||||| |||||||||||||    
T  32171560 ccaaccagtctcacaaatgcttatgtcagtaaataagttca 32171600  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 279
Target Start/End: Original strand, 12972766 - 12972816
Alignment:
Q  229 tatagtataagcaattatcatataagtccttatgtagaagttatttcaata 279  Q
    ||||| ||||||| ||||||||||||| |||||||| ||| ||||||||||    
T  12972766 tatagcataagcatttatcatataagtgcttatgtataagctatttcaata 12972816  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 289
Target Start/End: Original strand, 2400072 - 2400126
Alignment:
Q  235 ataagcaattatcatataagtccttatgtagaagttatttcaataccaaagataa 289  Q
    |||| |||||||||||||||| |||||||| ||||| |||| ||| |||||||||    
T  2400072 ataaacaattatcatataagtgcttatgtataagttgtttctataacaaagataa 2400126  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 464
Target Start/End: Original strand, 34927046 - 34927092
Alignment:
Q  418 ataaattcttccaaacagtcttacaaatgcttatgtctgtaaataag 464  Q
    |||| |||||||||||||||||| || |||||||||| |||||||||    
T  34927046 ataagttcttccaaacagtcttataagtgcttatgtcagtaaataag 34927092  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 297
Target Start/End: Original strand, 35809857 - 35809911
Alignment:
Q  243 ttatcatataagtccttatgtagaagttatttcaataccaaagataaaagaaaat 297  Q
    ||||||||||||| |||||||| |||||||||| ||  ||||||||||| |||||    
T  35809857 ttatcatataagtgcttatgtataagttatttccatgacaaagataaaataaaat 35809911  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 430 - 468
Target Start/End: Original strand, 5924108 - 5924146
Alignment:
Q  430 aaacagtcttacaaatgcttatgtctgtaaataagttca 468  Q
    |||||||||||||||||| |||||| |||||||||||||    
T  5924108 aaacagtcttacaaatgcgtatgtcagtaaataagttca 5924146  T

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