View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18046_low_5 (Length: 323)

Name: NF18046_low_5
Description: NF18046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18046_low_5
NF18046_low_5
[»] chr6 (10 HSPs)
chr6 (17-323)||(2307225-2307531)
chr6 (21-319)||(2339910-2340208)
chr6 (17-319)||(2351359-2351661)
chr6 (17-319)||(2362990-2363292)
chr6 (16-315)||(2261319-2261618)
chr6 (70-317)||(2357728-2357975)
chr6 (17-319)||(2368736-2369038)
chr6 (243-319)||(14711374-14711450)
chr6 (17-323)||(2297126-2297432)
chr6 (253-323)||(14753441-14753511)
[»] chr4 (1 HSPs)
chr4 (17-323)||(5804272-5804578)
[»] chr3 (1 HSPs)
chr3 (17-323)||(4305688-4305994)
[»] scaffold0408 (1 HSPs)
scaffold0408 (254-323)||(553-622)


Alignment Details
Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 17 - 323
Target Start/End: Original strand, 2307225 - 2307531
Alignment:
Q  17 aaaagcaaaagaagaactcgacgctcaaattggcaaagagagatgtgtaagggagtcggatataaataaattgacataccttcaagctatagttaaagaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  2307225 aaaagcaaaagaagaactcgacgctcaaattggcaaagagagatgtgtatgtgagtcagatataaataaattgacataccttcaagctatagtcaaagaa 2307324  T
Q  117 acactacgattatatccacccgctcctctttcaggacctcgtgaattctcggagaattgtactttaggaggttatcatgttataaagggaactcgattaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2307325 acactacgattatatccacccgctcctctttcaggacctcgtgaattctcggagaattgtactttaggaggttatcatgttataaagggaactcgattaa 2307424  T
Q  217 tcacaaatctttggaggattaacacggatcctaatatttggccagatccattagagttcaaaccagaaagatttcttaccactcataaagatgttgatgt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2307425 tcacaaatctttggaggattaacacggatcctaatatttggccagatccattagagttcaaaccagaaagatttcttaccactcataaagatgttgatgt 2307524  T
Q  317 taggggt 323  Q
    |||||||    
T  2307525 taggggt 2307531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 21 - 319
Target Start/End: Original strand, 2339910 - 2340208
Alignment:
Q  21 gcaaaagaagaactcgacgctcaaattggcaaagagagatgtgtaagggagtcggatataaataaattgacataccttcaagctatagttaaagaaacac 120  Q
    |||||||||||||| || |||||| ||||||||||||||||| |||| ||||  |||||||||||||||| |||||||||||||||||| ||||||||||    
T  2339910 gcaaaagaagaacttgatgctcaagttggcaaagagagatgtttaagcgagtttgatataaataaattgatataccttcaagctatagtcaaagaaacac 2340009  T
Q  121 tacgattatatccacccgctcctctttcaggacctcgtgaattctcggagaattgtactttaggaggttatcatgttataaagggaactcgattaatcac 220  Q
    || |||| |||||||| | |||||| || ||||| |||||||||||  ||||||||| |||||| |||||||| ||||||||||||||||||||||||||    
T  2340010 taagattgtatccaccgggtcctctctccggaccacgtgaattctcaaagaattgtaatttaggtggttatcaagttataaagggaactcgattaatcac 2340109  T
Q  221 aaatctttggaggattaacacggatcctaatatttggccagatccattagagttcaaaccagaaagatttcttaccactcataaagatgttgatgttag 319  Q
    ||||||||||| |||| | || ||||||| | |||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||    
T  2340110 aaatctttggaagattcaaacagatcctagtgtttggccagatccattagagttcaaaccagaaaggttttttaccactcataaagctgttgatgttag 2340208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 17 - 319
Target Start/End: Original strand, 2351359 - 2351661
Alignment:
Q  17 aaaagcaaaagaagaactcgacgctcaaattggcaaagagagatgtgtaagggagtcggatataaataaattgacataccttcaagctatagttaaagaa 116  Q
    |||||||||||||||||| ||| ||||  |||||||||| ||   |||||  |||||||||||   ||| |||  |||||||||||||||||| ||||||    
T  2351359 aaaagcaaaagaagaacttgacactcacgttggcaaagaaaggcttgtaaacgagtcggatattggtaagttggtataccttcaagctatagtaaaagaa 2351458  T
Q  117 acactacgattatatccacccgctcctctttcaggacctcgtgaattctcggagaattgtactttaggaggttatcatgttataaagggaactcgattaa 216  Q
    || ||| ||||  ||||||| | ||||||  | | ||||||||||||||| |||||||| ||| | || ||||| ||||||| ||| |||||||| ||||    
T  2351459 accctaagattgcatccaccaggtcctctcgccgcacctcgtgaattctcagagaattgcactattggtggttaccatgttagaaaaggaactcggttaa 2351558  T
Q  217 tcacaaatctttggaggattaacacggatcctaatatttggccagatccattagagttcaaaccagaaagatttcttaccactcataaagatgttgatgt 316  Q
    |   ||||||||||| |||| | || ||||||| | ||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  2351559 tgctaaatctttggaagattcaaactgatcctagtgtttggtcagatccattagagttcaaaccagaaaggtttcttaccactcataaagttgttgatgt 2351658  T
Q  317 tag 319  Q
    |||    
T  2351659 tag 2351661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 17 - 319
Target Start/End: Original strand, 2362990 - 2363292
Alignment:
Q  17 aaaagcaaaagaagaactcgacgctcaaattggcaaagagagatgtgtaagggagtcggatataaataaattgacataccttcaagctatagttaaagaa 116  Q
    |||||||||||||||||| || |||||| |||| |||||||| ||||||||  |||| |||||| | || |||   ||||||||||| ||||| ||||||    
T  2362990 aaaagcaaaagaagaacttgatgctcaagttggaaaagagaggtgtgtaagaaagtcagatatagacaagttggtgtaccttcaagccatagtcaaagaa 2363089  T
Q  117 acactacgattatatccacccgctcctctttcaggacctcgtgaattctcggagaattgtactttaggaggttatcatgttataaagggaactcgattaa 216  Q
    |||||| ||||||||||||| |  ||| | || |  |||||||||||||| |||||||||| |||||| || ||| |||| | ||| ||||| |||||||    
T  2363090 acactaagattatatccacctggccctttatctgtgcctcgtgaattctcagagaattgtaatttaggtggatatgatgtaagaaatggaacacgattaa 2363189  T
Q  217 tcacaaatctttggaggattaacacggatcctaatatttggccagatccattagagttcaaaccagaaagatttcttaccactcataaagatgttgatgt 316  Q
    |    |||||||||| |||| |||| ||||||||| ||||| ||||||||||||  |||||||| || || |||||||| || ||||||||| ||||| |    
T  2363190 ttttgaatctttggaagattcacactgatcctaatgtttggtcagatccattagtattcaaaccggagaggtttcttacaacgcataaagatattgattt 2363289  T
Q  317 tag 319  Q
    |||    
T  2363290 tag 2363292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 16 - 315
Target Start/End: Complemental strand, 2261618 - 2261319
Alignment:
Q  16 caaaagcaaaagaagaactcgacgctcaaattggcaaagagagatgtgtaagggagtcggatataaataaattgacataccttcaagctatagttaaaga 115  Q
    |||||||||||||||||||| ||  |||||||||  |||| ||||   |||  || || || |||||||| |||  ||| |||||||| ||||| |||||    
T  2261618 caaaagcaaaagaagaactcaacaatcaaattggagaagaaagattcataaatgactcagacataaataagttggtatatcttcaagcaatagtcaaaga 2261519  T
Q  116 aacactacgattatatccacccgctcctctttcaggacctcgtgaattctcggagaattgtactttaggaggttatcatgttataaagggaactcgatta 215  Q
    ||| ||| |||| ||||| || | |||||| |||| ||||||||||||| | ||  ||||||| ||||| || |||| | | | ||| |||||| || |     
T  2261518 aaccctaagattgtatcctccaggtcctctctcagcacctcgtgaattcacagaagattgtacgttaggtggctatcgtatcaaaaaaggaactagactt 2261419  T
Q  216 atcacaaatctttggaggattaacacggatcctaatatttggccagatccattagagttcaaaccagaaagatttcttaccactcataaagatgttgatg 315  Q
    ||||||||||||||||  ||| | || ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  2261418 atcacaaatctttggaaaattcaaaccgatccaagtatttggccagatccattagagttcaaaccagaaagatttcttaccactcacaaaaatgttgatg 2261319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 70 - 317
Target Start/End: Original strand, 2357728 - 2357975
Alignment:
Q  70 agtcggatataaataaattgacataccttcaagctatagttaaagaaacactacgattatatccacccgctcctctttcaggacctcgtgaattctcgga 169  Q
    ||||||||||||| || |||   ||||||||||| ||| | |||||||| ||| |||||||||||   | |||||| || | ||||||||| ||  | ||    
T  2357728 agtcggatataaacaagttggtgtaccttcaagcgataatcaaagaaaccctaagattatatccagttggtcctctctctgcacctcgtgagtttaccga 2357827  T
Q  170 gaattgtactttaggaggttatcatgttataaagggaactcgattaatcacaaatctttggaggattaacacggatcctaatatttggccagatccatta 269  Q
     |||||||   |||| |||||| |||| ||||| ||||||||| |||||  |||||||||||  ||  | || || | |||| ||||| | |||||||||    
T  2357828 aaattgtaacataggtggttatgatgtcataaaaggaactcgactaatcttaaatctttggaaaatccaaacagaccataatgtttggtcggatccatta 2357927  T
Q  270 gagttcaaaccagaaagatttcttaccactcataaagatgttgatgtt 317  Q
     |||| ||||||||||||||||||| |||| |||||||||||||||||    
T  2357928 aagtttaaaccagaaagatttcttaacacttataaagatgttgatgtt 2357975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 319
Target Start/End: Original strand, 2368736 - 2369038
Alignment:
Q  17 aaaagcaaaagaagaactcgacgctcaaattggcaaagagagatgtgtaagggagtcggatataaataaattgacataccttcaagctatagttaaagaa 116  Q
    |||||||||||||||||| ||  ||||| |||| |||||||| |||||||| ||| | || ||| | || |||   || |||||||| || || ||||||    
T  2368736 aaaagcaaaagaagaacttgatactcaagttggaaaagagaggtgtgtaagagagacagacatagacaagttggtgtatcttcaagccattgtcaaagaa 2368835  T
Q  117 acactacgattatatccacccgctcctctttcaggacctcgtgaattctcggagaattgtactttaggaggttatcatgttataaagggaactcgattaa 216  Q
    || ||| ||||||||||| | |  ||| | || | ||||||||||||||| |||||||| | |||||  || ||| |||| | ||| ||||| || ||||    
T  2368836 accctaagattatatccagctggccctttatcggcacctcgtgaattctcagagaattgcaatttagatggatatgatgtaagaaaaggaacacggttaa 2368935  T
Q  217 tcacaaatctttggaggattaacacggatcctaatatttggccagatccattagagttcaaaccagaaagatttcttaccactcataaagatgttgatgt 316  Q
    |    |||||| | | |||| |||| ||||| ||||||||| || ||||||| || |||||||||||  | |||||||| || |||||||| ||||||||    
T  2368936 ttttgaatcttagaaagattcacactgatccaaatatttggtcaaatccattggaattcaaaccagagcggtttcttactacccataaagacgttgatgt 2369035  T
Q  317 tag 319  Q
    |||    
T  2369036 tag 2369038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 243 - 319
Target Start/End: Complemental strand, 14711450 - 14711374
Alignment:
Q  243 gatcctaatatttggccagatccattagagttcaaaccagaaagatttcttaccactcataaagatgttgatgttag 319  Q
    ||||||| | ||||||| |||||||| ||||||||||| || ||||||||||| |||||||||||||||||||||||    
T  14711450 gatcctagtgtttggccggatccattggagttcaaacctgagagatttcttacaactcataaagatgttgatgttag 14711374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 17 - 323
Target Start/End: Original strand, 2297126 - 2297432
Alignment:
Q  17 aaaagcaaaagaagaactcgacgctcaaattggcaaagagagatgtgtaagggagtcggatataaataaattgacataccttcaagctatagttaaagaa 116  Q
    ||||||||||||||||||  || | |||||||| ||||| |  |||||||| ||||| ||| | ||||||||   ||| ||| | |||||| |||||||     
T  2297126 aaaagcaaaagaagaacttaacacacaaattggaaaagaaaattgtgtaagagagtcagatgttaataaattagtatatcttgatgctataattaaagag 2297225  T
Q  117 acactacgattatatccacccgctcctctttcaggacctcgtgaattctcggagaattgtactttaggaggttatcatgttataaagggaactcgattaa 216  Q
    |||||| |||| |||||||| |||||  ||||   |||||| |||||| | ||  |||| ||  |||| || || ||| | | ||||||||||||||| |    
T  2297226 acactaagattctatccaccagctccattttcgtcacctcgcgaattcacagaagattgcacaataggtggataccatatcaaaaagggaactcgattga 2297325  T
Q  217 tcacaaatctttggaggattaacacggatcctaatatttggccagatccattagagttcaaaccagaaagatttcttaccactcataaagatgttgatgt 316  Q
    |  ||||||| |||| |||| | |  ||  |||   ||||| ||||||||||||| || ||||| ||||| |||||||||||| | |||||||||||| |    
T  2297326 tgccaaatctatggaagattcatagagactctagggtttggtcagatccattagaatttaaacctgaaaggtttcttaccactaacaaagatgttgatct 2297425  T
Q  317 taggggt 323  Q
    | |||||    
T  2297426 tgggggt 2297432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 253 - 323
Target Start/End: Complemental strand, 14753511 - 14753441
Alignment:
Q  253 tttggccagatccattagagttcaaaccagaaagatttcttaccactcataaagatgttgatgttaggggt 323  Q
    ||||||| |||||||| |||||||| || |  ||||||||||| |||||||||||||||||||||| ||||    
T  14753511 tttggccggatccattggagttcaagcctgggagatttcttacaactcataaagatgttgatgttaagggt 14753441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 17 - 323
Target Start/End: Complemental strand, 5804578 - 5804272
Alignment:
Q  17 aaaagcaaaagaagaactcgacgctcaaattggcaaagagagatgtgtaagggagtcggatataaataaattgacataccttcaagctatagttaaagaa 116  Q
    |||||||||||||||||| ||| ||||  |||| | |||||||| ||| |  ||||| ||||||| ||| |||  |||||||||||||||||| || |||    
T  5804578 aaaagcaaaagaagaacttgacactcatgttggtagagagagatttgtgaatgagtcagatataattaagttggtataccttcaagctatagtcaaggaa 5804479  T
Q  117 acactacgattatatccacccgctcctctttcaggacctcgtgaattctcggagaattgtactttaggaggttatcatgttataaagggaactcgattaa 216  Q
    |||||  |||| |||||| | ||||||||    ||||||||||||||||| |||||||| |||||||| ||||||||||||| ||| |||||||||||||    
T  5804478 acactgagattgtatccatctgctcctctaggcggacctcgtgaattctcagagaattgcactttaggtggttatcatgttacaaaaggaactcgattaa 5804379  T
Q  217 tcacaaatctttggaggattaacacggatcctaatatttggccagatccattagagttcaaaccagaaagatttcttaccactcataaagatgttgatgt 316  Q
    ||||||||||||||| |||  | || |||| || | |||||||| |||||||||| || || |||||||| |||||||| |||||||||||| |||||||    
T  5804378 tcacaaatctttggaagatccaaacagatcttagtgtttggccaaatccattagattttaagccagaaaggtttcttacaactcataaagatattgatgt 5804279  T
Q  317 taggggt 323  Q
    |||||||    
T  5804278 taggggt 5804272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 17 - 323
Target Start/End: Original strand, 4305688 - 4305994
Alignment:
Q  17 aaaagcaaaagaagaactcgacgctcaaattggcaaagagagatgtgtaagggagtcggatataaataaattgacataccttcaagctatagttaaagaa 116  Q
    ||||||| |||||||||| |||   ||| ||||||||||||| |||||||  |||||||||||| | || |||  |||||||||||| ||||| ||||||    
T  4305688 aaaagcacaagaagaacttgacatccaagttggcaaagagaggtgtgtaaaagagtcggatatagacaagttggtataccttcaagcgatagtcaaagaa 4305787  T
Q  117 acactacgattatatccacccgctcctctttcaggacctcgtgaattctcggagaattgtactttaggaggttatcatgttataaagggaactcgattaa 216  Q
    || ||| | |||| ||||||||| ||||| |||||||| ||||| ||| | ||||| |  | |||||| |||||| |||| | ||| |||||| || |||    
T  4305788 accctaaggttatgtccacccgcccctctctcaggaccacgtgagttcacagagaactcaaatttaggtggttatgatgtcaaaaaaggaactagactaa 4305887  T
Q  217 tcacaaatctttggaggattaacacggatcctaatatttggccagatccattagagttcaaaccagaaagatttcttaccactcataaagatgttgatgt 316  Q
    |||  ||||| |||| |||  | || ||||||||  |||||  ||| || |||||||||||||||||| | |||||||| |||||||||| |||||||||    
T  4305888 tcatgaatctatggaagatccatactgatcctaaggtttggttagaacctttagagttcaaaccagaacggtttcttactactcataaaggtgttgatgt 4305987  T
Q  317 taggggt 323  Q
    || ||||    
T  4305988 taagggt 4305994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 254 - 323
Target Start/End: Original strand, 553 - 622
Alignment:
Q  254 ttggccagatccattagagttcaaaccagaaagatttcttaccactcataaagatgttgatgttaggggt 323  Q
    |||||| |||||||| |||||||| || |  ||||||||||| |||||||||||||||||||||| ||||    
T  553 ttggccggatccattggagttcaagcctgggagatttcttacaactcataaagatgttgatgttaagggt 622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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