View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18046_low_6 (Length: 311)
Name: NF18046_low_6
Description: NF18046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18046_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 15 - 297
Target Start/End: Original strand, 36820472 - 36820754
Alignment:
| Q |
15 |
aaagggagccaaaaaattgagtttccctctctcaaaacccaaatcaaacgaatcacaccattttcctctcacaaaatctcaatctccaccaccacacaat |
114 |
Q |
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| T |
36820472 |
aaagggagccaaaaaattgagtttccctctctcaaaacccaaatcaaacgaatcacaacattttcctctcacaaaatctcaatctccaccaccacacaat |
36820571 |
T |
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| Q |
115 |
gaagttcaaagcgttcatgacagaaaccggcgtaaacctacttgagaaacgtttcatcccatccctagaaaaaacctcaaaaacctgccatctctacttc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
36820572 |
gaagttcaaagcgttcatgacagaaaccggcgtaaacctacttgagaaacgtttcatcccatccctagaaaaaaccgcaaaaacctgccatctctacttc |
36820671 |
T |
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| Q |
215 |
acaaaaacccacacactcttcctccacaacctcctcaacggcgacggaatccaatccatcgcacaattcaccaaccaactcct |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36820672 |
acaaaaacccacacactcttcctccacaacctcctcaacggcgacggaatccaatccatcgcacaattcaccaaccaactcct |
36820754 |
T |
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