View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18046_low_9 (Length: 261)

Name: NF18046_low_9
Description: NF18046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18046_low_9
NF18046_low_9
[»] chr5 (2 HSPs)
chr5 (73-201)||(1012055-1012183)
chr5 (70-201)||(1010822-1010953)
[»] scaffold0035 (2 HSPs)
scaffold0035 (76-201)||(21135-21260)
scaffold0035 (77-201)||(22464-22587)
[»] chr1 (3 HSPs)
chr1 (76-160)||(51694537-51694621)
chr1 (76-160)||(40723071-40723155)
chr1 (75-131)||(21218600-21218656)
[»] chr3 (3 HSPs)
chr3 (23-86)||(11256050-11256112)
chr3 (93-125)||(44116756-44116788)
chr3 (93-125)||(44115447-44115479)
[»] scaffold0041 (1 HSPs)
scaffold0041 (96-160)||(54655-54719)
[»] chr7 (4 HSPs)
chr7 (76-160)||(19219019-19219103)
chr7 (96-160)||(40918376-40918440)
chr7 (93-131)||(24653735-24653773)
chr7 (93-160)||(24651529-24651596)
[»] chr4 (5 HSPs)
chr4 (98-160)||(23756629-23756691)
chr4 (71-160)||(5470185-5470274)
chr4 (93-125)||(5574216-5574248)
chr4 (95-131)||(5575578-5575614)
chr4 (76-124)||(35927187-35927235)
[»] scaffold0081 (1 HSPs)
scaffold0081 (77-160)||(43043-43126)
[»] chr2 (1 HSPs)
chr2 (76-160)||(44800871-44800955)
[»] chr6 (4 HSPs)
chr6 (77-160)||(7628324-7628407)
chr6 (95-160)||(18499942-18500007)
chr6 (96-160)||(18497948-18498012)
chr6 (72-160)||(24318102-24318190)
[»] chr8 (1 HSPs)
chr8 (73-125)||(20066068-20066120)


Alignment Details
Target: chr5 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 73 - 201
Target Start/End: Complemental strand, 1012183 - 1012055
Alignment:
Q  73 ttaaggcttaattaaacacacggtcccttaacttaattcttttatttaaattgctcccaaaagtattaaaatgttcaatttggtccttcacatgcgtttt 172  Q
    ||||||||||||| ||||| |||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| | ||| |||||    
T  1012183 ttaaggcttaattgaacacccggtcctttaacttaattcttttatttaaattggtcccaaaagtatcaaaatgttcaatttggtcctttatatgggtttt 1012084  T
Q  173 cattgaacaatttggtccaatttaatcaa 201  Q
    |||||||||||||||||||||||||||||    
T  1012083 cattgaacaatttggtccaatttaatcaa 1012055  T

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Target: chr5; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 70 - 201
Target Start/End: Original strand, 1010822 - 1010953
Alignment:
Q  70 aaattaaggcttaattaaacacacggtcccttaacttaattcttttatttaaattgctcccaaaagtattaaaatgttcaatttggtccttcacatgcgt 169  Q
    |||| ||||||||||| ||||  ||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||| | ||| ||    
T  1010822 aaatgaaggcttaattgaacatccggtcccttaatttaattcttttattcaaattggtcccaaaagtattaaaatgttcaatttggtcctttatatgggt 1010921  T
Q  170 tttcattgaacaatttggtccaatttaatcaa 201  Q
    ||||||||||||||||||||||||||||||||    
T  1010922 tttcattgaacaatttggtccaatttaatcaa 1010953  T

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Target: scaffold0035 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 76 - 201
Target Start/End: Original strand, 21135 - 21260
Alignment:
Q  76 aggcttaattaaacacacggtcccttaacttaattcttttatttaaattgctcccaaaagtattaaaatgttcaatttggtccttcacatgcgttttcat 175  Q
    |||||||||| ||| | |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| | ||| ||||||||    
T  21135 aggcttaattgaacgcccggtcccttaacttaattcttttattcaaattggtcccaaaagtattaaaatgttcaatttggtcctttatatgtgttttcat 21234  T
Q  176 tgaacaatttggtccaatttaatcaa 201  Q
    ||||||||||||||||||||||||||    
T  21235 tgaacaatttggtccaatttaatcaa 21260  T

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Target: scaffold0035; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 77 - 201
Target Start/End: Complemental strand, 22587 - 22464
Alignment:
Q  77 ggcttaattaaacacacggtcccttaacttaattcttttatttaaattgctcccaaaagtattaaaatgttcaatttggtccttcacatgcgttttcatt 176  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||| |||||||||    
T  22587 ggcttaattgaacacccggtcccttaacttaattcttttatttaaattggtcccaaaagtattaaaatgttcaatttggtcctttatatgtgttttcatt 22488  T
Q  177 gaacaatttggtccaatttaatcaa 201  Q
    |||||| ||||||||||||||||||    
T  22487 gaacaa-ttggtccaatttaatcaa 22464  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 76 - 160
Target Start/End: Complemental strand, 51694621 - 51694537
Alignment:
Q  76 aggcttaattaaacacacggtcccttaacttaattcttttatttaaattgctcccaaaagtattaaaatgttcaatttggtcctt 160  Q
    |||||||||| ||||| ||||||||||||||||||||||| || |||||| ||| | || | ||||||||||||| |||||||||    
T  51694621 aggcttaattgaacacccggtcccttaacttaattcttttcttcaaattggtcctataactcttaaaatgttcaagttggtcctt 51694537  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 160
Target Start/End: Complemental strand, 40723155 - 40723071
Alignment:
Q  76 aggcttaattaaacacacggtcccttaacttaattcttttatttaaattgctcccaaaagtattaaaatgttcaatttggtcctt 160  Q
    |||||||||| ||| | |||||| |||||||||||||||| || |||||| ||| | || | ||||||  |||||||||||||||    
T  40723155 aggcttaattgaactcccggtcctttaacttaattctttttttcaaattgatcctataacttttaaaagtttcaatttggtcctt 40723071  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 21218656 - 21218600
Alignment:
Q  75 aaggcttaattaaacacacggtcccttaacttaattcttttatttaaattgctccca 131  Q
    ||||||| ||| ||| | ||||||||||||||||||||||| || |||||| |||||    
T  21218656 aaggcttcattgaactcccggtcccttaacttaattcttttcttcaaattgatccca 21218600  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 11256050 - 11256112
Alignment:
Q  23 tgacatactctatcaatttcaaagtataagtaaaaattggtcaataaaaattaaggcttaatta 86  Q
    |||||||||| ||| ||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  11256050 tgacatactccatctattccaaagtataagtaaaaattggtcaataaaaatt-aggcttaatta 11256112  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 125
Target Start/End: Complemental strand, 44116788 - 44116756
Alignment:
Q  93 cggtcccttaacttaattcttttatttaaattg 125  Q
    |||||||||||||||||||||||||||||||||    
T  44116788 cggtcccttaacttaattcttttatttaaattg 44116756  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 125
Target Start/End: Original strand, 44115447 - 44115479
Alignment:
Q  93 cggtcccttaacttaattcttttatttaaattg 125  Q
    ||||||||||||||||||||||| |||||||||    
T  44115447 cggtcccttaacttaattcttttttttaaattg 44115479  T

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Target: scaffold0041 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 160
Target Start/End: Original strand, 54655 - 54719
Alignment:
Q  96 tcccttaacttaattcttttatttaaattgctcccaaaagtattaaaatgttcaatttggtcctt 160  Q
    |||||||||||||||||||||||||||||| | | | || ||||||||| |||||||||||||||    
T  54655 tcccttaacttaattcttttatttaaattggttctataactattaaaattttcaatttggtcctt 54719  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 160
Target Start/End: Complemental strand, 19219103 - 19219019
Alignment:
Q  76 aggcttaattaaacacacggtcccttaacttaattcttttatttaaattgctcccaaaagtattaaaatgttcaatttggtcctt 160  Q
    |||||||||| ||||| |||||||| |||||||||||||| || |||||| ||| | || | ||||||||||||| |||||||||    
T  19219103 aggcttaattgaacacccggtccctgaacttaattcttttcttcaaattggtcctataactcttaaaatgttcaagttggtcctt 19219019  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 160
Target Start/End: Complemental strand, 40918440 - 40918376
Alignment:
Q  96 tcccttaacttaattcttttatttaaattgctcccaaaagtattaaaatgttcaatttggtcctt 160  Q
    |||||||||||||||||||||||||||||| | | | || ||||||||| |||||||||||||||    
T  40918440 tcccttaacttaattcttttatttaaattggttctataactattaaaattttcaatttggtcctt 40918376  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 24653773 - 24653735
Alignment:
Q  93 cggtcccttaacttaattcttttatttaaattgctccca 131  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  24653773 cggtcccttaacttaattcttttatttaaattggtccca 24653735  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 160
Target Start/End: Original strand, 24651529 - 24651596
Alignment:
Q  93 cggtcccttaacttaattcttttatttaaattgctcccaaaagtattaaaatgttcaatttggtcctt 160  Q
    ||||||||||||||||||||||| ||||||||| ||||| |  | |||||||  |||| |||||||||    
T  24651529 cggtcccttaacttaattcttttttttaaattggtcccatatcttttaaaattctcaagttggtcctt 24651596  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 160
Target Start/End: Original strand, 23756629 - 23756691
Alignment:
Q  98 ccttaacttaattcttttatttaaattgctcccaaaagtattaaaatgttcaatttggtcctt 160  Q
    ||||||||||||||||||||| || ||| |||||||| ||||||||| |||||| ||||||||    
T  23756629 ccttaacttaattcttttattcaagttggtcccaaaactattaaaattttcaatgtggtcctt 23756691  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 160
Target Start/End: Complemental strand, 5470274 - 5470185
Alignment:
Q  71 aattaaggcttaattaaacacacggtcccttaacttaattcttttatttaaattgctcccaaaagtattaaaatgttcaatttggtcctt 160  Q
    |||| |||||||||| |||   || |||||||||||||||| |||||| || ||| |||||||| ||||||||| |||||| ||||||||    
T  5470274 aatttaggcttaattgaactgccgatcccttaacttaattcatttattcaagttggtcccaaaactattaaaattttcaatgtggtcctt 5470185  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 125
Target Start/End: Original strand, 5574216 - 5574248
Alignment:
Q  93 cggtcccttaacttaattcttttatttaaattg 125  Q
    |||||||||||||||||||||||||||||||||    
T  5574216 cggtcccttaacttaattcttttatttaaattg 5574248  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 131
Target Start/End: Complemental strand, 5575614 - 5575578
Alignment:
Q  95 gtcccttaacttaattcttttatttaaattgctccca 131  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  5575614 gtcccttaacttaattcttttttttaaattggtccca 5575578  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 35927235 - 35927187
Alignment:
Q  76 aggcttaattaaacacacggtcccttaacttaattcttttatttaaatt 124  Q
    |||||||||||||| | ||||||||||| ||||||||||| || |||||    
T  35927235 aggcttaattaaactcccggtcccttaaattaattcttttcttcaaatt 35927187  T

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Target: scaffold0081 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 160
Target Start/End: Complemental strand, 43126 - 43043
Alignment:
Q  77 ggcttaattaaacacacggtcccttaacttaattcttttatttaaattgctcccaaaagtattaaaatgttcaatttggtcctt 160  Q
    ||||||||| ||||   |||||||||||||||||||||| || |||||| ||| | || | ||||||||||||| |||||||||    
T  43126 ggcttaattgaacatctggtcccttaacttaattcttttcttcaaattggtcctataactcttaaaatgttcaagttggtcctt 43043  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 160
Target Start/End: Original strand, 44800871 - 44800955
Alignment:
Q  76 aggcttaattaaacacacggtcccttaacttaattcttttatttaaattgctcccaaaagtattaaaatgttcaatttggtcctt 160  Q
    |||||||||| ||| | ||||||||||| |||||| ||||  | |||||| ||||| || |||||||||  ||||||||||||||    
T  44800871 aggcttaattgaactcccggtcccttaatttaattttttttgtcaaattggtcccataactattaaaatcatcaatttggtcctt 44800955  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 160
Target Start/End: Original strand, 7628324 - 7628407
Alignment:
Q  77 ggcttaattaaacacacggtcccttaacttaattcttttatttaaattgctcccaaaagtattaaaatgttcaatttggtcctt 160  Q
    ||||||||| ||| | ||||||||||| |||||||||||  | |||||| ||||| || | |||||||  ||||||||||||||    
T  7628324 ggcttaattgaactcccggtcccttaatttaattctttttgtcaaattggtcccataacttttaaaatcatcaatttggtcctt 7628407  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 160
Target Start/End: Complemental strand, 18500007 - 18499942
Alignment:
Q  95 gtcccttaacttaattcttttatttaaattgctcccaaaagtattaaaatgttcaatttggtcctt 160  Q
    |||||||||||||||| |||||||||||||| | | | || |||||| || |||||| ||||||||    
T  18500007 gtcccttaacttaatttttttatttaaattggttctataactattaacattttcaatctggtcctt 18499942  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 160
Target Start/End: Original strand, 18497948 - 18498012
Alignment:
Q  96 tcccttaacttaattcttttatttaaattgctcccaaaagtattaaaatgttcaatttggtcctt 160  Q
    |||||||  |||||||| |||||||||||| ||| | || ||||||||| |||||| ||||||||    
T  18497948 tcccttagattaattctgttatttaaattggtcctataactattaaaattttcaatctggtcctt 18498012  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 160
Target Start/End: Complemental strand, 24318190 - 24318102
Alignment:
Q  72 attaaggcttaattaaacacacggtcccttaacttaattcttttatttaaattgctcccaaaagtattaaaatgttcaatttggtcctt 160  Q
    |||||||||||||| | ||   |||||||||||||||||||||| ||  ||||| ||||  || ||||||| | || ||||||||||||    
T  24318190 attaaggcttaattgatcatttggtcccttaacttaattctttttttcgaattggtcccttaattattaaactttttaatttggtcctt 24318102  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 20066068 - 20066120
Alignment:
Q  73 ttaaggcttaattaaacacacggtcccttaacttaattcttttatttaaattg 125  Q
    ||||||||||||| ||| | |||||| |||| ||||||||||| |||||||||    
T  20066068 ttaaggcttaattgaactcccggtcctttaatttaattcttttttttaaattg 20066120  T

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