View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18047_high_10 (Length: 395)
Name: NF18047_high_10
Description: NF18047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18047_high_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 184 - 377
Target Start/End: Original strand, 25525714 - 25525907
Alignment:
| Q |
184 |
gtgaaaagtagatgaacaatctaattaactaatttggcataaataaaagcattattgacttcaaaacctgctatcactcttctcttcacgtgaaacaaat |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25525714 |
gtgaaaagtagatgaacaatctaattaactaatttggcataaataaaagcattattgacttcaaaacctgctatcactcttctcttcacgtgaaacaaat |
25525813 |
T |
|
| Q |
284 |
aaaggaaggtaaactacatgaggatcatctctctattgtttcaacctctccccgcccctttcaccttaataatcaatccatctgttgtgtacaa |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25525814 |
aaaggaaggtaaactacatgaggatcatctctctattgtttcaacctctccccgcccctttcaccttaataatcaatccatctgttgtgtacaa |
25525907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 9 - 111
Target Start/End: Original strand, 25525539 - 25525641
Alignment:
| Q |
9 |
atcatcatcatcaccaaaacagaaatcagaaactaagatgcatacatataaagcacgttgcagatgagaaaatgaaaacaactaaactggtataaacagg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25525539 |
atcatcatcatcaccaaaacagaaatcagaaactaagatgcatacatataaagcacgttgcagatgagaaaatgaaaacaactaaactggtataaacagg |
25525638 |
T |
|
| Q |
109 |
tga |
111 |
Q |
| |
|
||| |
|
|
| T |
25525639 |
tga |
25525641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 274 - 365
Target Start/End: Complemental strand, 25516566 - 25516476
Alignment:
| Q |
274 |
tgaaacaaataaaggaaggtaaactacatgaggatcatctctctattgtttcaacctctccccgcccctttcaccttaataatcaatccatc |
365 |
Q |
| |
|
||||||| ||||||||||||||| ||||| ||||||||||||||||||| ||||||| || | ||||||||||||||||||||||||||| |
|
|
| T |
25516566 |
tgaaacacataaaggaaggtaaataacatggggatcatctctctattgttccaacctc-accagtccctttcaccttaataatcaatccatc |
25516476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 25539212 - 25539248
Alignment:
| Q |
70 |
agatgagaaaatgaaaacaactaaactggtataaaca |
106 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
25539212 |
agatgagaaaatgaaaacaactaaactcgcataaaca |
25539248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University