View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18047_high_14 (Length: 343)
Name: NF18047_high_14
Description: NF18047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18047_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 38674129 - 38674456
Alignment:
| Q |
1 |
tacactatttactctttcttgttcagttttttgacatggtcatattctagtgatatgggtcgcgtgtttggagtccaagttattgctattcaaaattttc |
100 |
Q |
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| T |
38674129 |
tacactgtttactctttcttgttcagttttttgacatggtcatattctagtgatatgggtcgcgggtttggagtccaagttattgctattcaaatttttc |
38674228 |
T |
|
| Q |
101 |
aatattcaaaagccttcaaagtcaaagtaaaacaataaacacttcaaattccactcc-ctatatatatgagttgtgcca-cccctcattccatcaaaaca |
198 |
Q |
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| T |
38674229 |
aatattcaaaagccttcacagtcaaagcaaaacaataaaca-ttttaattccactcctctatataaatgagttatgccaccccctcctttcatcaaaaca |
38674327 |
T |
|
| Q |
199 |
catcaacatatcacaatttaatttc-----atcatatcatatcatatagtttgtgagaattaatataaaatccttcaaagcacaacaacagttcatagat |
293 |
Q |
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||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
38674328 |
cattaacatatcacaatttaatttcatcatatcatatcatatcatatagtttgtgagaatta--ataaactccttcaaagcacaacaacagttcatagat |
38674425 |
T |
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| Q |
294 |
tgatattagttgaatcaaacaaacatacatg |
324 |
Q |
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| T |
38674426 |
tgatattagttgaatcaaacaaacatacatg |
38674456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 2 - 324
Target Start/End: Original strand, 38666388 - 38666705
Alignment:
| Q |
2 |
acactatttactctttcttgttcagttttttgacatggtcatattctagtgatatgggtcgcgtgtttggagtccaagttattgctattcaaaattttca |
101 |
Q |
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| T |
38666388 |
acactgtttactctttcttgttcaatattttgacatagtcatgttttagtgatatgggt---gtgtttggagtccaaggtattgctattccaatttttca |
38666484 |
T |
|
| Q |
102 |
atattcaaaagccttcaaagtcaaagtaaaacaataaacacttcaaattccactcc-ctatatatatgagttgtgccacccc-tcattccatcaaaacac |
199 |
Q |
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| T |
38666485 |
atattcaaac-ctttcacagtcaaagcaaaacaataaacattttaa-ttccactcctctatataaatgagttatgccaccccctcctttcatcaaaacac |
38666582 |
T |
|
| Q |
200 |
atcaacatatcacaatttaatttcatcatatcatatcatatagtttgtgagaattaatataaaatccttcaaagcacaacaacagttcatagattgatat |
299 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
38666583 |
attaacatatcacaatttaatttcatcatatcatatcatatagtttgtgagaatta--ataaactccttcaaagcacaacaacagttcatagattgatat |
38666680 |
T |
|
| Q |
300 |
tagttgaatcaaacaaacatacatg |
324 |
Q |
| |
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| T |
38666681 |
tagttgaatcaaacaaacatacatg |
38666705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 115 - 324
Target Start/End: Complemental strand, 38669171 - 38668966
Alignment:
| Q |
115 |
ttcaaagtcaaagtaaaacaataaacacttcaaattccactccctatatatatgagttgtgccacccctcattccatcaaaacacatcaacatatcacaa |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||| |
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| T |
38669171 |
ttcaaagtcaaagtaaaacaataaacacttcaaattccactccctatatatatgagttg--ccacccctccttccatcaaaacacattaacatatcacaa |
38669074 |
T |
|
| Q |
215 |
tttaatttcatcatatcatatcatatagtttgtgagaattaatataaaatccttcaaagcacaacaacagttcatagattgatattagttgaatcaaaca |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38669073 |
tttaatttcatcatatcatatcatatagtttgtgagaatta--ataaactccttcaaagcacaacaacagttcatagattgatattagttgaatcaaaca |
38668976 |
T |
|
| Q |
315 |
aacatacatg |
324 |
Q |
| |
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|||||||||| |
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| T |
38668975 |
aacatacatg |
38668966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 38669273 - 38669218
Alignment:
| Q |
9 |
ttactctttcttgttcagttttttgacatggtcatattctagtgatatgggtcgcg |
64 |
Q |
| |
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||||||||||||||||| ||||||||||||||| | || ||||| ||||||||||| |
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| T |
38669273 |
ttactctttcttgttcaattttttgacatggtcgtgttttagtgttatgggtcgcg |
38669218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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