View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18047_high_18 (Length: 305)

Name: NF18047_high_18
Description: NF18047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18047_high_18
NF18047_high_18
[»] chr8 (13 HSPs)
chr8 (16-287)||(36202462-36202733)
chr8 (16-284)||(36207934-36208202)
chr8 (16-284)||(36184750-36185018)
chr8 (16-261)||(36199055-36199300)
chr8 (16-284)||(36213363-36213631)
chr8 (16-284)||(36196906-36197171)
chr8 (16-284)||(36201077-36201345)
chr8 (16-284)||(36210021-36210289)
chr8 (16-159)||(36188588-36188731)
chr8 (240-284)||(36214831-36214875)
chr8 (225-284)||(36188749-36188808)
chr8 (111-157)||(36183441-36183487)
chr8 (223-275)||(36183540-36183592)


Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 287
Target Start/End: Original strand, 36202462 - 36202733
Alignment:
Q  16 aatatcttgcaacccttatgatcttcgccaaaggggataccaatttcacttaaatcaagtctaccatggagatcatacattacaactaggattgtttgca 115  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  36202462 aatatcttgcaacccttatgatcttcaccaaagggcataccaatttcacttaaatcaagtctaccatggagatcatacattacaactaggactgtttgca 36202561  T
Q  116 gctccttcatcttagcacacagtagaagagctctttctgcagttctttttcttttgttattaccataaaacaggcaacaggatgattcagctagagcaat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||| |||||||||||||||||||||| ||||    
T  36202562 gctccttcatcttagcacacagtagaagagctctttctgcagttcttattcttttgttattaccgtaagacatgcaacaggatgattcagctagatcaat 36202661  T
Q  216 cttatcatcaaaattcagacatattgcatcaccaatttgtgtttgaatctgtgtaatgtctggcttcttcgt 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36202662 cttatcatcaaaattcagacatattgcatcaccaatttgtgtttgaatctgtgtaatgtctggcttcttcgt 36202733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 16 - 284
Target Start/End: Original strand, 36207934 - 36208202
Alignment:
Q  16 aatatcttgcaacccttatgatcttcgccaaaggggataccaatttcacttaaatcaagtctaccatggagatcatacattacaactaggattgtttgca 115  Q
    |||||||||||||| ||||||||||| ||||||||||||||||| |||| |||||||||||||||||| |||||||||| ||||||||| | ||||||||    
T  36207934 aatatcttgcaaccattatgatcttcaccaaaggggataccaatctcacctaaatcaagtctaccatgaagatcatacagtacaactagtactgtttgca 36208033  T
Q  116 gctccttcatcttagcacacagtagaagagctctttctgcagttctttttcttttgttattaccataaaacaggcaacaggatgattcagctagagcaat 215  Q
    | | ||| |||||||||||||| ||||||||||||||||||||| |  |||||||||||||||||||| ||| |||||| |||| ||||| |||| | ||    
T  36208034 gtttctttatcttagcacacagaagaagagctctttctgcagttgtcattcttttgttattaccataacacacgcaacaagatgtttcagatagatcgat 36208133  T
Q  216 cttatcatcaaaattcagacatattgcatcaccaatttgtgtttgaatctgtgtaatgtctggcttctt 284  Q
    |||||||||||||||||||| |||||||  |||||| |||||||||||||   |||||||||| |||||    
T  36208134 cttatcatcaaaattcagacctattgcaataccaatctgtgtttgaatcttgctaatgtctggtttctt 36208202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 16 - 284
Target Start/End: Original strand, 36184750 - 36185018
Alignment:
Q  16 aatatcttgcaacccttatgatcttcgccaaaggggataccaatttcacttaaatcaagtctaccatggagatcatacattacaactaggattgtttgca 115  Q
    |||||||||||||| ||||||||||| ||||||||||||||||| |||| |||||||||||||||||| |||||| ||| ||||||||| | ||||||||    
T  36184750 aatatcttgcaaccattatgatcttcaccaaaggggataccaatctcacctaaatcaagtctaccatgaagatcacacaatacaactagtactgtttgca 36184849  T
Q  116 gctccttcatcttagcacacagtagaagagctctttctgcagttctttttcttttgttattaccataaaacaggcaacaggatgattcagctagagcaat 215  Q
    | ||||| |||||||| ||||| ||||||||||||||||||||| |  |||||||||||||||||||| ||| |||||| |||| ||||| |||| | ||    
T  36184850 gttcctttatcttagcgcacagaagaagagctctttctgcagttgtcattcttttgttattaccataacacacgcaacaagatgtttcagatagatcgat 36184949  T
Q  216 cttatcatcaaaattcagacatattgcatcaccaatttgtgtttgaatctgtgtaatgtctggcttctt 284  Q
    |||||||||||||||||||| |||||||  |||||| |||||||||||||   |||||||||| |||||    
T  36184950 cttatcatcaaaattcagacctattgcaataccaatctgtgtttgaatcttgctaatgtctggtttctt 36185018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 16 - 261
Target Start/End: Original strand, 36199055 - 36199300
Alignment:
Q  16 aatatcttgcaacccttatgatcttcgccaaaggggataccaatttcacttaaatcaagtctaccatggagatcatacattacaactaggattgtttgca 115  Q
    |||||||||||||| ||||||||||| ||||||||||||||||| | ||||||||||||||||||||  |||||||||| ||||||||||| ||||||||    
T  36199055 aatatcttgcaaccattatgatcttcaccaaaggggataccaatcttacttaaatcaagtctaccataaagatcatacactacaactaggactgtttgca 36199154  T
Q  116 gctccttcatcttagcacacagtagaagagctctttctgcagttctttttcttttgttattaccataaaacaggcaacaggatgattcagctagagcaat 215  Q
    |||| ||||||||||||||||| |||||||||||||||| |||| |   |||||| |||||| || || ||| |||||| |  |||||||||| | |  |    
T  36199155 gctctttcatcttagcacacagaagaagagctctttctgtagttgtcaatcttttattattaacaaaacacatgcaacaagtagattcagctatatctgt 36199254  T
Q  216 cttatcatcaaaattcagacatattgcatcaccaatttgtgtttga 261  Q
    | |||||||||||||||||| ||||||||| || ||| ||||||||    
T  36199255 cgtatcatcaaaattcagacctattgcatccccgattagtgtttga 36199300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 284
Target Start/End: Original strand, 36213363 - 36213631
Alignment:
Q  16 aatatcttgcaacccttatgatcttcgccaaaggggataccaatttcacttaaatcaagtctaccatggagatcatacattacaactaggattgtttgca 115  Q
    |||||||||||||| ||||||||||| |||||||||| |||||| |||| |||||| ||||| ||||| ||||||||||||||||  |||| ||||||||    
T  36213363 aatatcttgcaaccattatgatcttcaccaaaggggacaccaatctcacctaaatcgagtctcccatgaagatcatacattacaatcaggactgtttgca 36213462  T
Q  116 gctccttcatcttagcacacagtagaagagctctttctgcagttctttttcttttgttattaccataaaacaggcaacaggatgattcagctagagcaat 215  Q
    |||| |||||||||||||| |  ||| ||||||||||||||||| |   | ||||  |||||||| || ||| |||||| | |||||| |||| |   ||    
T  36213463 gctctttcatcttagcacaaataagatgagctctttctgcagttgtcactgttttactattaccaaaacacatgcaacaagttgattcggctacattcat 36213562  T
Q  216 cttatcatcaaaattcagacatattgcatcaccaatttgtgtttgaatctgtgtaatgtctggcttctt 284  Q
    |||||||| |||||| |||| ||||||||||||||||||||||||||||  ||||||||||||||||||    
T  36213563 cttatcattaaaattgagacctattgcatcaccaatttgtgtttgaatcattgtaatgtctggcttctt 36213631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 16 - 284
Target Start/End: Original strand, 36196906 - 36197171
Alignment:
Q  16 aatatcttgcaacccttatgatcttcgccaaagggg---ataccaatttcacttaaatcaagtctaccatggagatcatacattacaactaggattgttt 112  Q
    |||||||||||||| ||||||||||| |||||||||   |||||||| |||| |||||| ||||| ||| | |||||||||| ||||||||||| |||||    
T  36196906 aatatcttgcaaccattatgatcttcaccaaagggggggataccaatctcacctaaatcgagtctcccacgaagatcatacagtacaactaggactgttt 36197005  T
Q  113 gcagctccttcatcttagcacacagtagaagagctctttctgcagttctttttcttttgttattaccataaaacaggcaacaggatgattcagctagagc 212  Q
    ||||||| ||||||||||||||||  ||| |||||||||||||||||    |||||||  |||||||| |||||| |||||| | |||||||||| || |    
T  36197006 gcagctctttcatcttagcacacaaaagatgagctctttctgcagttgccattctttttctattaccaaaaaacatgcaacaagttgattcagctggatc 36197105  T
Q  213 aatcttatcatcaaaattcagacatattgcatcaccaatttgtgtttgaatctgtgtaatgtctggcttctt 284  Q
      |||||||||||||||       |||||||||||||||| |||||||||||| ||||||||||||||||||    
T  36197106 cgtcttatcatcaaaat------ctattgcatcaccaattagtgtttgaatctttgtaatgtctggcttctt 36197171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 16 - 284
Target Start/End: Original strand, 36201077 - 36201345
Alignment:
Q  16 aatatcttgcaacccttatgatcttcgccaaaggggataccaatttcacttaaatcaagtctaccatggagatcatacattacaactaggattgtttgca 115  Q
    |||| ||||||||| ||||||||||| |||||||||| |||||| || | |||||||| ||||||||| |||||||||| ||||||||||| ||||||||    
T  36201077 aataccttgcaaccattatgatcttcaccaaaggggacaccaatctcccctaaatcaaatctaccatgaagatcatacagtacaactaggactgtttgca 36201176  T
Q  116 gctccttcatcttagcacacagtagaagagctctttctgcagttctttttcttttgttattaccataaaacaggcaacaggatgattcagctagagcaat 215  Q
    ||||||||||||||||||| |  ||| ||||||| ||||||||| |  |||||||  |||||||| || ||| |||||| | |||||  |||    |  |    
T  36201177 gctccttcatcttagcacaaataagatgagctctatctgcagttgtcattcttttactattaccaaaacacatgcaacaagttgattttgctgcctccgt 36201276  T
Q  216 cttatcatcaaaattcagacatattgcatcaccaatttgtgtttgaatctgtgtaatgtctggcttctt 284  Q
    | |||||| |||||| |||| ||||||||||||||| |||||||||||||   ||||||||||||||||    
T  36201277 catatcattaaaattgagacctattgcatcaccaatctgtgtttgaatcttattaatgtctggcttctt 36201345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 16 - 284
Target Start/End: Original strand, 36210021 - 36210289
Alignment:
Q  16 aatatcttgcaacccttatgatcttcgccaaaggggataccaatttcacttaaatcaagtctaccatggagatcatacattacaactaggattgtttgca 115  Q
    |||||||||||||| ||||||||||| ||||||||||||||||| || | |||||  |||| |||||| ||||||||||||||||  |||| ||||||||    
T  36210021 aatatcttgcaaccattatgatcttcaccaaaggggataccaatctctcctaaattgagtcgaccatgaagatcatacattacaatcaggactgtttgca 36210120  T
Q  116 gctccttcatcttagcacacagtagaagagctctttctgcagttctttttcttttgttattaccataaaacaggcaacaggatgattcagctagagcaat 215  Q
    |||| |||||||||||||| || |||  |||||||||||||||| |  |||||||  |||||||| ||  |  |||||  | |||| | |||| |    |    
T  36210121 gctctttcatcttagcacaaagaagatcagctctttctgcagttatcattcttttactattaccaaaacgcgtgcaaccagttgatacggctacatacgt 36210220  T
Q  216 cttatcatcaaaattcagacatattgcatcaccaatttgtgtttgaatctgtgtaatgtctggcttctt 284  Q
    |||||||| |||||| |||| ||||||||  ||||||| ||||||||||| ||||||||||||||||||    
T  36210221 cttatcattaaaattgagacctattgcattgccaatttctgtttgaatctttgtaatgtctggcttctt 36210289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 16 - 159
Target Start/End: Original strand, 36188588 - 36188731
Alignment:
Q  16 aatatcttgcaacccttatgatcttcgccaaaggggataccaatttcacttaaatcaagtctaccatggagatcatacattacaactaggattgtttgca 115  Q
    |||||||||||||| ||||||||||| ||||||||||||||||| || | |||||  |||| |||||| ||||||||||||||||  |||| ||||||||    
T  36188588 aatatcttgcaaccattatgatcttcaccaaaggggataccaatctctcctaaattgagtcgaccatgaagatcatacattacaatcaggactgtttgca 36188687  T
Q  116 gctccttcatcttagcacacagtagaagagctctttctgcagtt 159  Q
    |||| |||||||||||||| || |||  ||||||||||||||||    
T  36188688 gctctttcatcttagcacaaagaagatcagctctttctgcagtt 36188731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 36214831 - 36214875
Alignment:
Q  240 tgcatcaccaatttgtgtttgaatctgtgtaatgtctggcttctt 284  Q
    |||||||||||||||||||||||||| ||||||||||||||||||    
T  36214831 tgcatcaccaatttgtgtttgaatctttgtaatgtctggcttctt 36214875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 284
Target Start/End: Original strand, 36188749 - 36188808
Alignment:
Q  225 aaaattcagacatattgcatcaccaatttgtgtttgaatctgtgtaatgtctggcttctt 284  Q
    |||||| |||| ||||||||  ||||||| ||||||||||| ||||||||||||||||||    
T  36188749 aaaattgagacctattgcatagccaatttctgtttgaatctttgtaatgtctggcttctt 36188808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 157
Target Start/End: Original strand, 36183441 - 36183487
Alignment:
Q  111 ttgcagctccttcatcttagcacacagtagaagagctctttctgcag 157  Q
    ||||||||||||||||||||||||||  | |||||||||||||||||    
T  36183441 ttgcagctccttcatcttagcacacaaaataagagctctttctgcag 36183487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 275
Target Start/End: Original strand, 36183540 - 36183592
Alignment:
Q  223 tcaaaattcagacatattgcatcaccaatttgtgtttgaatctgtgtaatgtc 275  Q
    |||||||| |||| |||||||  ||||||||||||| |||||| |||||||||    
T  36183540 tcaaaattgagacctattgcaataccaatttgtgttcgaatctatgtaatgtc 36183592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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