View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18047_high_3 (Length: 669)

Name: NF18047_high_3
Description: NF18047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18047_high_3
NF18047_high_3
[»] chr3 (1 HSPs)
chr3 (7-656)||(54494179-54494828)


Alignment Details
Target: chr3 (Bit Score: 626; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 626; E-Value: 0
Query Start/End: Original strand, 7 - 656
Target Start/End: Original strand, 54494179 - 54494828
Alignment:
Q  7 taaattatactgcattaaattggattggaataagttttttaaatgagtgatccaaactgaatccaaccataggtgattttgtctttgaatcagaattacc 106  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  54494179 taaattacactgcattaaattggattggaataagttttttaaatgagtgatccaaactgaatccaaccataggtgattttgtctttgaatcagaattgcc 54494278  T
Q  107 aaaatcgcacctcgaacactactagcagaaagctttcccaactattgtcataactatgaagcttctcttcaatgaaagcatcctcacccaatgacaattt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54494279 aaaatcgcacctcgaacactactagcagaaagctttcccaactattgtcataactatgaagcttctcttcaatgaaagcatcctcacccaatgacaattt 54494378  T
Q  207 cttgtcaccgtgtctacaagtaaacaatgtcatcacctctcataatctatcgtgtagtcgacagaatctctaagaagtatcacaaatggcatctatgtac 306  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  54494379 cttgtcaccgagtctacaagtaaacaatgccatcacctctcataatctatcgtgtagtcgacagaatctctaagaagtatcgcaaatggcatctatgtac 54494478  T
Q  307 attatctaatggtgttctatcgtgtgtcattggctgcaaacacgcttttcaggtgtgggtaaggtgcacaagtatctcgattctctcttcaaagttcaag 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54494479 attatctaatggtgttctatcgtgtgtcattggctgcaaacacgcttttcaggtgtgggtaaggtgcacaagtatctcgattctctcttcaaagttcaag 54494578  T
Q  407 atcgtcaactcaagtgtgaacttaagaacacaaaattgacaagatatatcgatgaatgtcatatcaagaacatgtatatgatttatacttgaaggatcac 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54494579 atcgtcaactcaagtgtgaacttaagaacacaaaattgacaagatatatcgatgaatgtcatatcaagaacatgtatatgatttatacttgaaggatcac 54494678  T
Q  507 aggaggaattcaattcctttgtaataatgatttataatcatctttacacgcactttgtagaagacattgagatattactcatggtagatgaggcacaatt 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54494679 aggaggaattcaattcctttgtaataatgatttataatcatctttacacgcactttgtagaagacattgagatattactcatggtagatgaggcacaatt 54494778  T
Q  607 tgacaattttcctcaagaatttgttaaatgtagcgtctctgcaaatattg 656  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  54494779 tgacaattttcctcaagaatttgttaaaggtagcgtctctgcaaatattg 54494828  T

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