View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18047_high_30 (Length: 237)
Name: NF18047_high_30
Description: NF18047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18047_high_30 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 24616743 - 24616524
Alignment:
| Q |
1 |
gcaaaatttagacggaagtattaaagtaatttaataaagatactgacataactgcattaacattaatgtcttctaaatgaagaacacatcttgaactttc |
100 |
Q |
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| T |
24616743 |
gcaaaatttagacggaagtattaaagtaatttaataaagatactgacataactgcattaacattaatgtcttctaaatgaaggacacatcttgaactttc |
24616644 |
T |
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| Q |
101 |
ttgactatatttggagaatgcacaagatctgtgggaacttggaagagatcaattttagggctctactttctctgaaatgtttccagtcatctgaaacaat |
200 |
Q |
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| T |
24616643 |
ttgactatatttggagaatgcacaagatctgtgggaacttggaagagatcaagtttagggctctactttctctgaaatgtttccagtcatctgaaacaat |
24616544 |
T |
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| Q |
201 |
taacaataaaatataatgaa |
220 |
Q |
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||||||||||||||||||| |
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| T |
24616543 |
caacaataaaatataatgaa |
24616524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 24107032 - 24107150
Alignment:
| Q |
1 |
gcaaaatttagacggaagtattaaagtaatttaataaagatactgacataactgcattaacattaatgtcttctaaatgaa-gaacacatcttgaacttt |
99 |
Q |
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|||||||||||||||||| ||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
24107032 |
gcaaaatttagacggaagaattaaagtactttcataaagatgctgacataactgcattaacattaatgtcttctaaatgaaggagcacatcttgaacttt |
24107131 |
T |
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| Q |
100 |
cttgactatatttggagaa |
118 |
Q |
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| T |
24107132 |
cttgactatatttggagaa |
24107150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 24114063 - 24114144
Alignment:
| Q |
1 |
gcaaaatttagacggaagtattaaagtaatttaataaagatactgacataactgcattaacattaatgtcttctaaatgaag |
82 |
Q |
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| T |
24114063 |
gcaaaatataggcggaagaattaaagtaatttaataaagatgctgacataactgcattaactttaatgccttctaaatgaag |
24114144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 113 - 212
Target Start/End: Original strand, 24114144 - 24114243
Alignment:
| Q |
113 |
ggagaatgcacaagatctgtgggaacttggaagagatcaattttagggctctactttctctgaaatgtttccagtcatctgaaacaattaacaataaaat |
212 |
Q |
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| T |
24114144 |
ggagaatgcacaagatctctgggaactgggaagacgtcaagtttaggcctctactttctctgaaatgtttcaagtcatctcaatcaaacaacaataaaat |
24114243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 145
Target Start/End: Original strand, 24107488 - 24107523
Alignment:
| Q |
110 |
tttggagaatgcacaagatctgtgggaacttggaag |
145 |
Q |
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| T |
24107488 |
tttggagaatgcacaagatctgtgggaactgggaag |
24107523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 137
Target Start/End: Complemental strand, 29132841 - 29132768
Alignment:
| Q |
65 |
aatgtcttctaaatgaagaa-cacatcttgaactttcttgactatatttggagaatgcacaagatctgtgggaa |
137 |
Q |
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| T |
29132841 |
aatgtcttctaaatgacgaagcttgtcttgaactctcataactaaatttggagaatacacaagatctgtgggaa |
29132768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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