View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18047_high_5 (Length: 533)
Name: NF18047_high_5
Description: NF18047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18047_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 433; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 14 - 516
Target Start/End: Original strand, 31718097 - 31718593
Alignment:
| Q |
14 |
agatgaagaagcttgggggaaaagaagttcttagtttgagaggtgat-ccaaggtctgatactaactcaatggtgtttattataaattgcaatgagtata |
112 |
Q |
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| T |
31718097 |
agatgaagaaacttgggggaaaagaagtttttagtttgagaggtgattccaaggtctgatactaactcaatggtgtttattataaattgcaatgagtata |
31718196 |
T |
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| Q |
113 |
ttattggctgtttgttttcttgcttcccatctttagctgaacagtgggaatgatgaagatgatcttactgatgaccgggaagatcttgatgaagcgggaa |
212 |
Q |
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| T |
31718197 |
tt---ggctgtttgttttcttgcttcccatctttagctgaacagtgggaatgatgaagatgatcttactgatgaccgggaagatcttgatgaagcgggaa |
31718293 |
T |
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| Q |
213 |
attcgtgtcaagatgcatcagatgaatgccttaaaagtgaatcgatcgatttccatgtgcctagccaccctcagtatgatattgaacttcaataactctt |
312 |
Q |
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| T |
31718294 |
attcgtgtcaatatgcatcagatgaatgccttaagagtgaatcg----atttccatgtgcctagccacccccagtatgatattgaacttcaataactctt |
31718389 |
T |
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| Q |
313 |
tggtttggaaatgttgtaaaatttggctgttgcattggctcttgtttcaatcttttatggttgccgaagttaaagaaatatgaaatcaatactagacagt |
412 |
Q |
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| T |
31718390 |
tggtttggaaatgttgtaaaatttggctgttgcattggctcttgtttcaatcttttatggttgccgaagttaaagaaatatgaaatgaatactagacagt |
31718489 |
T |
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| Q |
413 |
ccttgactacaattgacatgatgtgttctttatttgctaatggaatgtaaggtattgattttctgattagtgacaggtttactcagtagaatatgacgcg |
512 |
Q |
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| T |
31718490 |
ccttgactacaattgacatgatgtgttctttatttgctaatggaatgtaaggtattgattttctgattagtgacaggtttactcggtagaatatgatgcg |
31718589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 432 - 506
Target Start/End: Complemental strand, 31011383 - 31011309
Alignment:
| Q |
432 |
gatgtgttctttatttgctaatggaatgtaaggtattgattttctgattagtgacaggtttactcagtagaatat |
506 |
Q |
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|||||||||||||||||| |||| ||||| || ||||||| ||||||| ||||||||| |||||| ||||||| |
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| T |
31011383 |
gatgtgttctttatttgcaaatgaaatgtgagttattgatcctctgattgttgacaggttcactcagcagaatat |
31011309 |
T |
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