View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18047_high_6 (Length: 509)
Name: NF18047_high_6
Description: NF18047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18047_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 78 - 493
Target Start/End: Original strand, 32275893 - 32276308
Alignment:
| Q |
78 |
aatggtctatctatcatataatatatataaattataatgtagaaaatcaacaaagaaattgactaaacataaattaaaataaagagattacaatagcatt |
177 |
Q |
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| T |
32275893 |
aatggtctatctatcatataatatatataaattataatgtagcaaaccaacaaagaaattgactaaacataaattaaaataaagagattacaatagcatt |
32275992 |
T |
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| Q |
178 |
taacacaagtgagtgaaaatgacaacctcgaccttcttaagacaaatgaaaccaatcaaaatacctaagctataaaactaaggaacacactaaagagcat |
277 |
Q |
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| T |
32275993 |
taacacaagtgagtgaaaatgacaacctcgaccttcttaagacaaatgaaaccaatcaaaatacctaagctataaaactaaggaacacactaaagagcat |
32276092 |
T |
|
| Q |
278 |
aataccaacaattgcagctacacaatccaatctagttgaactagaggacttttctcctgaacttggtgccggtgctggtgcagatgcctcagcctcatga |
377 |
Q |
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| T |
32276093 |
aataccaacaattgcagctacacaatccaatctagttgaactagaggacttttctcctgaacttggtgccggtgctggtgcagatgcctcagcctcataa |
32276192 |
T |
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| Q |
378 |
ggagcttcagaggaactcattggagtagggaaaaatgaagaaatatctggagaagtcacataaggtaaaacacctggagaagctgagattgttggctcag |
477 |
Q |
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| T |
32276193 |
ggagcttcagaggaactcattggagtagggaaaaatgaagaaatatctggagaagtcacataaggtaaaacacctggagaagctgagattgttggctcag |
32276292 |
T |
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| Q |
478 |
tagtagtagaactcac |
493 |
Q |
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| T |
32276293 |
tagtagtagaactcac |
32276308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 32275797 - 32275878
Alignment:
| Q |
13 |
aaaatatggaacaaagatcattagaattacaaatacaaaccaaaattgcatagttcaccatgattaatggtctatctatcat |
94 |
Q |
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|||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
32275797 |
aaaatatggaacaaagatcagtagaattacaaaaacaaaccaaaattgcatagtacaccatgattaatggtctatctatcat |
32275878 |
T |
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