View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18047_low_1 (Length: 843)
Name: NF18047_low_1
Description: NF18047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18047_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 632 - 828
Target Start/End: Complemental strand, 3285518 - 3285322
Alignment:
| Q |
632 |
ctgatgaattcctctgtcatgtctaattaagaaagtttcactgttctcattcatcacagttatttcttctttcttgatctcttttcttaaagcctttaat |
731 |
Q |
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| T |
3285518 |
ctgatgaattcctctgtcatgtctaattaagaaagtttcactgttctcattcatcacagttatttcttctttcttgatctcttttcttaaagcctttaat |
3285419 |
T |
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| Q |
732 |
gtgtattttactgttccattattttaaggatgtgtgttcttctttgatccttgaatttgtcaaactttcatactagtatgcttaagcttttcttcat |
828 |
Q |
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| T |
3285418 |
gtgtattttactgttccattattttaaggatgtgtgttcttctttgatccttgaatttgtcaaactttcatactagtatgcttaagcttttcttcat |
3285322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 247 - 443
Target Start/End: Complemental strand, 3285903 - 3285707
Alignment:
| Q |
247 |
tttgatagttctgttaatgctgtctcctttggttttgttgctactgctgttcttatttcaatgttcttactcatggccatttttgaaaggtttcttgcac |
346 |
Q |
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| T |
3285903 |
tttgatagttctgttaatgctgtctcctttggttttgttgctactgctgttcttatttcaatgttcttactcatggccatttttgaaaggtttcttgcac |
3285804 |
T |
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| Q |
347 |
cttcttcacaagctttgtttcctaatcttcgccggaaccgtcgtgccgttgagtctccgatcagaaaacttggtcaccaccaatcacctaacgtgag |
443 |
Q |
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| T |
3285803 |
cttcttcacaagctttgtttcctaatcttcgccggaaccgtcgtgccgttgagtctccgatcagaaaacttggtcaccaccaatcacctaaagtgag |
3285707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 3286136 - 3285952
Alignment:
| Q |
17 |
aaggtgaacactgaagagtgaagagaatcataattattatggtaagagaagaagggtaaaactggaaaaggtgaaaaaagagcaaaggaacagtgatggt |
116 |
Q |
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| T |
3286136 |
aaggtgaacactgaagagtgaagagaatcataattattatggtaagagaagaagggtaaaactggaaaaggtgaaaaaagagcaaaggaacagtgatggt |
3286037 |
T |
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| Q |
117 |
aatggtactaggaacagaggagcatgttgttgagaatggttggagtccaataggggccccactaaatgtacaaagagatgatcat |
201 |
Q |
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| T |
3286036 |
aatggtactcggaacagaggagcatgttgttgagaatggttggagtccaataggggccccactaaatgtacaaagagatgatcat |
3285952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 499 - 598
Target Start/End: Complemental strand, 3285651 - 3285552
Alignment:
| Q |
499 |
gtaatgtgactttcctaaacaatgatgattatttatttatctgacaaaaatgttttgttgtttgtttctattggttgcttttacttctcatctaattaat |
598 |
Q |
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| T |
3285651 |
gtaatgtgactttcctaaacaatgatgattatttatttatctgacaaaaatgttttgttgtttgtttctataggttgcttttacttctcatcttattaat |
3285552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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