View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18047_low_12 (Length: 366)
Name: NF18047_low_12
Description: NF18047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18047_low_12 |
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| [»] scaffold0580 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 15 - 351
Target Start/End: Original strand, 28992609 - 28992945
Alignment:
| Q |
15 |
gggcagatcatattggtcattccctaatcccactagatcatggtccagagcgtccatctagaccgtccaatatgtatcatatgatgtgattgtctccaga |
114 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||| |
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| T |
28992609 |
gggcagaccatattggtcattccctaatcccactagatcatggtccagagcgtccatctaaaccgtccgatatgtatcatatgatgtgactgtctccaga |
28992708 |
T |
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| Q |
115 |
tcattacaagtgtccttaaatgatacatgtctaggtgaaggcctaacatccaaaaacctactcattctctataaatattattgcatagtgttgggtcagg |
214 |
Q |
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| T |
28992709 |
tcattacaagtgtccttaaatgatacatgtctaggtgaaggcctaacagccaaaaacctactcattctctataaatattattgcatagtgttgggtcagg |
28992808 |
T |
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| Q |
215 |
tatctcactctttaccctaatattcgtgtcactaac--gaccactcgttgacttgagcattccggaacacgtgcaggtacaacaccccttccggtggaga |
312 |
Q |
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| T |
28992809 |
tatctcactctttaccctaatattcgcgtcactaacttgaccactcgttgacttgagcat--cgaaacacgtacaggtacaacaccccttccggtggaga |
28992906 |
T |
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| Q |
313 |
aggattcacgacagaccaacgatggactcatggcggatt |
351 |
Q |
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| T |
28992907 |
aggattcacgacagaccaacgatggactcatggcggatt |
28992945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0580 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0580
Description:
Target: scaffold0580; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 233
Target Start/End: Original strand, 1230 - 1369
Alignment:
| Q |
95 |
atgatgtgattgtctccagatcattacaagtgtccttaaatgatacatgtctaggtgaaggcctaacatccaaaaacc-tactcattctctataaatatt |
193 |
Q |
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| T |
1230 |
atgatgtgactatcaccagattattacaagtgtcccataaggacatttgtccaggtgaagacctgacaaccaaaaatcatactcattccctataaatatt |
1329 |
T |
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| Q |
194 |
attgcatagtgttgggtcaggtatctcactctttacccta |
233 |
Q |
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| || | |||||||||| |||||||||||||||||||| |
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| T |
1330 |
tatacacaatgttgggtcatgtatctcactctttacccta |
1369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0580; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 233
Target Start/End: Original strand, 8969 - 9108
Alignment:
| Q |
95 |
atgatgtgattgtctccagatcattacaagtgtccttaaatgatacatgtctaggtgaaggcctaacatccaaaaacc-tactcattctctataaatatt |
193 |
Q |
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| T |
8969 |
atgatgtgactatcaccagattattacaagtgtcccataaggacatttgtccaggtgaagacctgacaaccaaaaatcatactcattccctataaatatt |
9068 |
T |
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| Q |
194 |
attgcatagtgttgggtcaggtatctcactctttacccta |
233 |
Q |
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| || | |||||||||| |||||||||||||||||||| |
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| T |
9069 |
tatacacaatgttgggtcatgtatctcactctttacccta |
9108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 230
Target Start/End: Original strand, 40410191 - 40410327
Alignment:
| Q |
95 |
atgatgtgattgtctccagatcattacaagtgtccttaaatgatacatgtctaggtgaaggcctaacatccaaaaa-cctactcattctctataaatatt |
193 |
Q |
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||||||||| | || |||||| ||||||||||||| | | || | |||| |||||||| ||| ||| ||||||| ||||||||||| ||||||||||| |
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| T |
40410191 |
atgatgtgactatcaccagattattacaagtgtcccttgaggacatttgtccaggtgaagacctgacaaccaaaaatcctactcattccctataaatatt |
40410290 |
T |
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| Q |
194 |
attgcatagtgttgggtcaggtatctcactctttacc |
230 |
Q |
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| || | | || ||||| ||||||||||||||||| |
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| T |
40410291 |
tatacacaatattcggtcatgtatctcactctttacc |
40410327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 3421820 - 3421881
Alignment:
| Q |
177 |
cattctctataaatattattgcatagtgttgggtcaggtatctcactctttaccctaatatt |
238 |
Q |
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| T |
3421820 |
cattctctataaatattaatgcacaatattcggttaggtatctcactctttatcttaatatt |
3421881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 238
Target Start/End: Original strand, 24411904 - 24412029
Alignment:
| Q |
114 |
atcattacaagtgtccttaaatgatacatgtctaggtgaaggcctaacatccaaaaa-cctactcattctctataaatattattgcatagtgttgggtca |
212 |
Q |
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||||||||||| ||||||| | || ||||||||||||||||| ||||| ||||||| | || | || |||||||| || |||| | | |||||||| |
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| T |
24411904 |
atcattacaagcgtccttagaagacacatgtctaggtgaaggtctaacggccaaaaatcatatttatcacttataaatactaatgcacaatattgggtca |
24412003 |
T |
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| Q |
213 |
ggtatctcactctttaccctaatatt |
238 |
Q |
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| T |
24412004 |
gatatcttcctctttaccctaatatt |
24412029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 191
Target Start/End: Original strand, 19630606 - 19630690
Alignment:
| Q |
108 |
ctccagatcattacaagtgtccttaaatgatacatgtctaggtgaaggcctaaca-tccaaaaacctactcattctctataaata |
191 |
Q |
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| T |
19630606 |
ctccagatcaatacaagtgtcctttgaggacaactgtcaaggtgaaggcctaacagtcataaagcctactcattctcgataaata |
19630690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 191
Target Start/End: Original strand, 19654867 - 19654951
Alignment:
| Q |
108 |
ctccagatcattacaagtgtccttaaatgatacatgtctaggtgaaggcctaacatccaaaaacc-tactcattctctataaata |
191 |
Q |
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| T |
19654867 |
ctccagatcaatacaagtgtcctttgaagacatatgtcaaggtgaaggcctgacagtcataaaccttactcattctcgataaata |
19654951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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