View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18047_low_14 (Length: 353)

Name: NF18047_low_14
Description: NF18047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18047_low_14
NF18047_low_14
[»] chr3 (3 HSPs)
chr3 (116-343)||(31261825-31262052)
chr3 (131-192)||(5846059-5846120)
chr3 (123-192)||(11432721-11432790)
[»] chr8 (5 HSPs)
chr8 (117-343)||(40745971-40746196)
chr8 (18-116)||(31041279-31041380)
chr8 (136-210)||(24777581-24777655)
chr8 (107-218)||(11018881-11018993)
chr8 (64-104)||(31076242-31076282)
[»] chr4 (5 HSPs)
chr4 (116-191)||(51779117-51779192)
chr4 (117-189)||(51750672-51750744)
chr4 (117-192)||(50535029-50535104)
chr4 (116-189)||(14273573-14273646)
chr4 (116-188)||(33282246-33282318)
[»] chr1 (2 HSPs)
chr1 (123-240)||(39933072-39933190)
chr1 (295-343)||(39932940-39932988)
[»] chr5 (1 HSPs)
chr5 (134-215)||(35195508-35195588)
[»] chr2 (1 HSPs)
chr2 (117-199)||(40606089-40606171)
[»] chr7 (2 HSPs)
chr7 (115-192)||(42149988-42150065)
chr7 (144-192)||(29892282-29892330)


Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 116 - 343
Target Start/End: Original strand, 31261825 - 31262052
Alignment:
Q  116 aggaaagtttacccaatacccctacacttatactttcacccttacgaattatgaaaaattccaattttaccctttttataatttgactttacccctacaa 215  Q
    |||||| ||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31261825 aggaaattttaccctatacccctacacttatactttcatccttacaaattatgaaaaattccaattttaccctttttataatttgacttcacccctacaa 31261924  T
Q  216 aatatttctactaattaaaagttacccagaattcctcacttaaccttcaatcaagaaattcttccatgatcattgatgtattaacaacaaatcttccaca 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31261925 aatatttctactaattaaaagttacccagaattcctcacttaaccttcaatcaagaaattcttccatgatcattgatgtattaacaacaaatcttccaca 31262024  T
Q  316 aactcaaactcacgaggttaaacctatg 343  Q
    ||||||||||||||||||||||||||||    
T  31262025 aactcaaactcacgaggttaaacctatg 31262052  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 131 - 192
Target Start/End: Complemental strand, 5846120 - 5846059
Alignment:
Q  131 atacccctacacttatactttcacccttacgaattatgaaaaattccaattttacccttttt 192  Q
    |||||| ||||| |||||||||||||| || |||| | || |||||||||||||||||||||    
T  5846120 atacccttacacatatactttcaccctaacaaattttcaagaattccaattttacccttttt 5846059  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 192
Target Start/End: Original strand, 11432721 - 11432790
Alignment:
Q  123 tttacccaatacccctacacttatactttcacccttacgaattatgaaaaattccaattttacccttttt 192  Q
    ||||||| ||||||| || | | ||||||||||| ||| |||| | ||| ||||||||||||||||||||    
T  11432721 tttaccccataccccaacgcatgtactttcacccctactaatttttaaatattccaattttacccttttt 11432790  T

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Target: chr8 (Bit Score: 191; Significance: 1e-103; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 117 - 343
Target Start/End: Complemental strand, 40746196 - 40745971
Alignment:
Q  117 ggaaagtttacccaatacccctacacttatactttcacccttacgaattatgaaaaattccaattttaccctttttataatttgactttacccctacaaa 216  Q
    ||||| ||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  40746196 ggaaattttaccctatacccctacacttatactttccaccttacgaattatgaaaaattccaattttacc-tttttataatttgacttcacccctacaaa 40746098  T
Q  217 atatttctactaattaaaagttacccagaattcctcacttaaccttcaatcaagaaattcttccatgatcattgatgtattaacaacaaatcttccacaa 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  40746097 atatttctactaattaaaagttacccagaattcctcacttaaccttcaatcaagaaattattccatgatcattgatgtattaacaacaaatcttccacaa 40745998  T
Q  317 actcaaactcacgaggttaaacctatg 343  Q
    ||||||||||||||||||||| |||||    
T  40745997 actcaaactcacgaggttaaatctatg 40745971  T

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Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 31041279 - 31041380
Alignment:
Q  18 tatgtcttatcttatcatttgtgacacatatctcataaattactaatataataataagtgacattgaatta-ttttctttt--gtttattcattaacttt 114  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||   ||||||||||||||||    
T  31041279 tatgtcttatcttatcatttgtgtcacatatgtcataaattactaatataataataagtgacattgaattatttttctttttgttttattcattaacttt 31041378  T
Q  115 ga 116  Q
    ||    
T  31041379 ga 31041380  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 210
Target Start/End: Original strand, 24777581 - 24777655
Alignment:
Q  136 cctacacttatactttcacccttacgaattatgaaaaattccaattttaccctttttataatttgactttacccc 210  Q
    ||||| |||| |||||||||||||| ||  ||  |||||||||||||||||| |||||| ||||||||| |||||    
T  24777581 cctacgcttaaactttcacccttacaaaccatataaaattccaattttaccccttttatcatttgacttcacccc 24777655  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 218
Target Start/End: Original strand, 11018881 - 11018993
Alignment:
Q  107 ttaactttgaggaaagtttacccaatacccctacacttatactttcacccttacgaattatgaaaaattccaattttaccctttttataa-tttgacttt 205  Q
    |||| ||| |||||| | ||||| ||||||||||||||  || |||||||  || |||||| |||| |  |||||||||||| ||| ||| ||||||||     
T  11018881 ttaaatttcaggaaattataccctatacccctacacttcaaccttcaccccaacaaattataaaaactgtcaattttaccctctttttaattttgacttc 11018980  T
Q  206 acccctacaaaat 218  Q
    ||||| |||||||    
T  11018981 accccaacaaaat 11018993  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 31076242 - 31076282
Alignment:
Q  64 tataataataagtgacattgaattattttcttttgtttatt 104  Q
    |||||||||||||||||||| |||||| || ||||||||||    
T  31076242 tataataataagtgacattggattattatcatttgtttatt 31076282  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 51779117 - 51779192
Alignment:
Q  116 aggaaagtttacccaatacccctacacttatactttcacccttacgaattatgaaaaattccaattttaccctttt 191  Q
    |||||| |||||||||||||||||||| ||||||||||||||||| |||| |  ||||||||||||||| ||||||    
T  51779117 aggaaattttacccaatacccctacacatatactttcacccttacaaatttttcaaaattccaattttatcctttt 51779192  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 189
Target Start/End: Original strand, 51750672 - 51750744
Alignment:
Q  117 ggaaagtttacccaatacccctacacttatactttcacccttacgaattatgaaaaattccaattttaccctt 189  Q
    ||||| ||||||| ||||||||| || ||||||||||||| ||| |||  | | |||||||||||||||||||    
T  51750672 ggaaattttaccctatacccctatacatatactttcacccctacaaatcttcacaaattccaattttaccctt 51750744  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 192
Target Start/End: Original strand, 50535029 - 50535104
Alignment:
Q  117 ggaaagtttacccaatacccctacacttatactttcacccttacgaattatgaaaaattccaattttacccttttt 192  Q
    ||||| |||| || ||||||| |||  ||||||||||||| ||| ||| || ||||| ||||||||||||||||||    
T  50535029 ggaaattttatcctataccccaacatatatactttcacccctacaaataatcaaaaactccaattttacccttttt 50535104  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 189
Target Start/End: Complemental strand, 14273646 - 14273573
Alignment:
Q  116 aggaaagtttacccaatacccctacacttatactttcacccttacgaattatgaaaaattccaattttaccctt 189  Q
    |||||| ||||||| |||||||||||  ||  ||||||||| ||| |||| | |||||||||||||||| ||||    
T  14273646 aggaaattttaccctatacccctacaaataatctttcacccctacaaattttcaaaaattccaattttatcctt 14273573  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 188
Target Start/End: Original strand, 33282246 - 33282318
Alignment:
Q  116 aggaaagtttacccaatacccctacacttatactttcacccttacgaattatgaaaaattccaattttaccct 188  Q
    |||||| ||||||| |||||||||||  | | ||||||||| ||| |||  | ||||||||||||||||||||    
T  33282246 aggaaattttaccctatacccctacaaatgttctttcacccctacaaatattcaaaaattccaattttaccct 33282318  T

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Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 123 - 240
Target Start/End: Complemental strand, 39933190 - 39933072
Alignment:
Q  123 tttacccaatacccctacacttatactttcacccttacgaattatgaaaaatt-ccaattttaccctttttataatttgactttacccctacaaaatatt 221  Q
    ||||||| | ||||| ||| ||| || ||||||| ||| |||||| ||||||| |||||||||| |||||||| | ||||||| ||||||||||||||||    
T  39933190 tttaccctacaccccaacatttacacattcacccctaccaattataaaaaatttccaattttacactttttatgacttgacttcacccctacaaaatatt 39933091  T
Q  222 tctactaattaaaagttac 240  Q
    |||| || |||||| ||||    
T  39933090 tctattagttaaaatttac 39933072  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 295 - 343
Target Start/End: Complemental strand, 39932988 - 39932940
Alignment:
Q  295 attaacaacaaatcttccacaaactcaaactcacgaggttaaacctatg 343  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  39932988 attaacaacaaatcttccacaaacttaaattcacgaggttaaacctatg 39932940  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 215
Target Start/End: Original strand, 35195508 - 35195588
Alignment:
Q  134 cccctacacttatactttcacccttacgaattatgaaaaattccaattttaccctttttataatttgactttacccctacaa 215  Q
    ||||||||||| ||| ||||||||||| ||  || |||||||||||||||||||  ||||| ||||||||| ||||| ||||    
T  35195508 cccctacacttttaccttcacccttacaaaccatcaaaaattccaattttaccc-ctttatcatttgacttcacccccacaa 35195588  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 199
Target Start/End: Original strand, 40606089 - 40606171
Alignment:
Q  117 ggaaagtttacccaatacccctacacttatactttcacccttacgaattatgaaaaattccaattttaccctttttataattt 199  Q
    ||||| ||||||| |||||||  ||| | ||||||||||| |||  ||| | |||||||||||||||||||| ||||| ||||    
T  40606089 ggaaattttaccctataccccagcacatgtactttcacccctacatattttcaaaaattccaattttaccctctttattattt 40606171  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 192
Target Start/End: Complemental strand, 42150065 - 42149988
Alignment:
Q  115 gaggaaagtttacccaatacccctacacttatactttcacccttacgaattatgaaaaattccaattttacccttttt 192  Q
    ||||||| ||||||| | ||||| |||| | ||||||||||| ||| ||| || |||||||||||||||  |||||||    
T  42150065 gaggaaattttaccctacaccccaacacatgtactttcacccctacaaatcatcaaaaattccaattttgtccttttt 42149988  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 192
Target Start/End: Complemental strand, 29892330 - 29892282
Alignment:
Q  144 tatactttcacccttacgaattatgaaaaattccaattttacccttttt 192  Q
    ||||||||||||||||| |||||  ||||| |||||| |||||||||||    
T  29892330 tatactttcacccttacaaattaacaaaaaatccaatattacccttttt 29892282  T

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