View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18047_low_2 (Length: 678)
Name: NF18047_low_2
Description: NF18047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18047_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 450; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 135 - 667
Target Start/End: Complemental strand, 27422930 - 27422399
Alignment:
| Q |
135 |
accccctacaacacaatttgtcagctacaaagcagtagacaccaacacataatccaagcagaaataaatggcttgcttccacctgttaataagcggctaa |
234 |
Q |
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| T |
27422930 |
accccgtacaacacaatttgtcagctacaaagcagtagccaccaacacataatccaagcagaaataaatggcttgcttccacctgttaataagcggctaa |
27422831 |
T |
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| Q |
235 |
agacttcaacaagccaaaataggtaaggaattccctttacgcgcctgaatcgccaacatgattaaataa-ataatataggagcgtcaattttgaagggca |
333 |
Q |
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| T |
27422830 |
agacttcaacaagccaaaataggtaaggaattccctttacgcgcctgaatcgccaacatgattaaataacataatataggagcgtcaattttgaagggca |
27422731 |
T |
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| Q |
334 |
acaaacgcaacactatataggggaattcagcataaccaacacaccagcaaaagaattcaatatgctctttattttaaagactcgatatactcatctagtt |
433 |
Q |
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| T |
27422730 |
acaaacgcaacactatataggggaaatcagcataaccaacacaccagcaa--gaattcaatatgctctttattttaaagactcgatatactcatctagtt |
27422633 |
T |
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| Q |
434 |
ttattgcataacataacacaatgttgtattttgataaagnnnnnnnggaagaatgaaattcaatacgttctttgcttaagaacttaaaatttcctcaagc |
533 |
Q |
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| T |
27422632 |
ttattgcataacacaacacaatgttatattttgataaagaaaaaaaggaagaatgaaattcaatacgttctttgcttaagaacttaaaatttcctcaagc |
27422533 |
T |
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| Q |
534 |
aaaatatttagcatgaatggtaggagacaaccattagatccaatttaagactcacagaaaccataaaatgcatatcaaaatcgcaaacttcatgctaaat |
633 |
Q |
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| T |
27422532 |
aaaatatttagcctgaatggtaggagacaaccaatatatccaattcaagactcacaaaaaccataaaatacatatcaaaatcgcaaacttcatgctaaat |
27422433 |
T |
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| Q |
634 |
aatagttcttttttataatcaagccaatagtata |
667 |
Q |
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| T |
27422432 |
aatagttcttttttataatcaagccaatagtata |
27422399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 27423146 - 27423075
Alignment:
| Q |
44 |
agatgaggctgcagtgacgcgatgagttttggggctcgtggttgaaatcacagtgttggaattcatgatgtg |
115 |
Q |
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| T |
27423146 |
agatgaggctgcagtgacgcgatgagttttggggctcgtggttgaaatcacagtgttggaattcatgatgtg |
27423075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 212 - 268
Target Start/End: Original strand, 19683587 - 19683642
Alignment:
| Q |
212 |
tccacctgttaataagcggctaaagacttcaacaagccaaaataggtaaggaattcc |
268 |
Q |
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| T |
19683587 |
tccacctgttaataagcagctaaagacttcaa-aagccaaaataattaaggagttcc |
19683642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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