View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18047_low_21 (Length: 297)
Name: NF18047_low_21
Description: NF18047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18047_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 14 - 281
Target Start/End: Original strand, 35697625 - 35697892
Alignment:
| Q |
14 |
ttgaataatgaatgatttaatcaaaatttgtatcacaaggaggctgctttgtatgtatggttttcgtgtttcattt-gcttttttcattgacaaaagatc |
112 |
Q |
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| T |
35697625 |
ttgaataatgaatgatttaatcaaaatttgtatcacaaggaggctgctttgtatgtatggttttggtatttcattttgcttttttcattgacaaaagatc |
35697724 |
T |
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| Q |
113 |
ttcattaataattaagcatacaacaaggtacaaagaagtggtgtaattactaaattacaagcaatgaagcaaaagtaatattgctaacatagtgatcgag |
212 |
Q |
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| T |
35697725 |
ttcattaataattaagcatacaacaaggtacaa-gaagtggtgtaattactaaattacaagcaatgaagcaaaagtaatattgctaacatagtgattgag |
35697823 |
T |
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| Q |
213 |
tgcttgcagataaaatcaagaagacatgtaaaatgtttaacaccaatgaattttaactcagcataaaag |
281 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||| |
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| T |
35697824 |
tgcttgcagataaaatcaagaagacatgtaaaatgtctaacaccagtgaattttaactctgcataaaag |
35697892 |
T |
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