View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18047_low_29 (Length: 243)
Name: NF18047_low_29
Description: NF18047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18047_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 10 - 238
Target Start/End: Original strand, 33627516 - 33627744
Alignment:
| Q |
10 |
agaagaacttattaggtcaacaaaaattgcaaaatcactgcaacaagagccctttaaaaccatattcaaaagggagtatcgacctcacttggtaatggcg |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33627516 |
agaagaacttattaggtcaacaaaaattgcaaaatcactgcaacaagagccctttaaaaccatattcaaaagggagtatcgacctcacttggtaatggcg |
33627615 |
T |
|
| Q |
110 |
atagcaatcccgttttttcaacaagttacagggatcaacattattgctttctattcacctaacctctttagatctttggggttgggacacaatgcttctt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33627616 |
atagcaatcccgttttttcaacaagttacagggatcaacattattgctttctattcacctaacctctttagatctttggggttgggacacaatgcttctt |
33627715 |
T |
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| Q |
210 |
tactttctgcgattatacttggcgttgtt |
238 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
33627716 |
tactttctgcgattatacttggcgttgtt |
33627744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 10 - 177
Target Start/End: Original strand, 33609126 - 33609293
Alignment:
| Q |
10 |
agaagaacttattaggtcaacaaaaattgcaaaatcactgcaacaagagccctttaaaaccatattcaaaagggagtatcgacctcacttggtaatggcg |
109 |
Q |
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|||||||||||||| ||||| | || |||||||||| | | ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
33609126 |
agaagaacttattaagtcaatagaacttgcaaaatcggttaaccaagagccctttaaaaccatattaaaaagggagtatcgacctcacttggtgatggca |
33609225 |
T |
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| Q |
110 |
atagcaatcccgttttttcaacaagttacagggatcaacattattgctttctattcacctaacctctt |
177 |
Q |
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| T |
33609226 |
tttgcaatcccatttttccaacaacttaccgggatcaacatcgtcgctttctattcacctaacctctt |
33609293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 10 - 231
Target Start/End: Original strand, 33618301 - 33618522
Alignment:
| Q |
10 |
agaagaacttattaggtcaacaaaaattgcaaaatcactgcaacaagagccctttaaaaccatattcaaaagggagtatcgacctcacttggtaatggcg |
109 |
Q |
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|||||||||||| | || ||| ||||||| |||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| |
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| T |
33618301 |
agaagaacttatcaagtggacagaaattgcgaaatcagtgcaacaagagccctttaaaaccatattaaaaagggaatatcgacctcacttggtgatggca |
33618400 |
T |
|
| Q |
110 |
atagcaatcccgttttttcaacaagttacagggatcaacattattgctttctattcacctaacctctttagatctttggggttgggacacaatgcttctt |
209 |
Q |
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| |||||||||||||| ||||| ||||||||||||| ||| | || || |||||||| ||||||||| ||| |||| || |||||| | | ||| |
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| T |
33618401 |
tttgcaatcccgtttttccaacagcttacagggatcaatattgtagccttttattcacccaacctctttcactctgtgggttttggacacgacggagctt |
33618500 |
T |
|
| Q |
210 |
tactttctgcgattatacttgg |
231 |
Q |
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||||||| || ||||||||||| |
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| T |
33618501 |
tactttccgccattatacttgg |
33618522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 11 - 198
Target Start/End: Original strand, 33622491 - 33622678
Alignment:
| Q |
11 |
gaagaacttattaggtcaacaaaaattgcaaaatcactgcaacaagagccctttaaaaccatattcaaaagggagtatcgacctcacttggtaatggcga |
110 |
Q |
| |
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||||||| ||||| ||||||| |||||| ||||||| | || |||| ||||||||||||||| | ||||| ||||||| |||||| | ||||||| |
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| T |
33622491 |
gaagaacatattaagtcaacacaaattgtaaaatcagtaaaaaaagatccctttaaaaccatactaaaaagagagtatcaacctcagattttaatggcct |
33622590 |
T |
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| Q |
111 |
tagcaatcccgttttttcaacaagttacagggatcaacattattgctttctattcacctaacctctttagatctttggggttgggaca |
198 |
Q |
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|||||||| ||| ||| |||| |||||||||| ||||||| |||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
33622591 |
tagcaatctcgtgtttcgaacatgttacagggaacaacattgttgctttctattcacctaacctctttagttctttgggtttgggaca |
33622678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 48 - 219
Target Start/End: Original strand, 33588448 - 33588619
Alignment:
| Q |
48 |
tgcaacaagagccctttaaaaccatattcaaaagggagtatcgacctcacttggtaatggcgatagcaatcccgttttttcaacaagttacagggatcaa |
147 |
Q |
| |
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||||||||||||| |||| |||||||| | || | ||||||||||||||||| ||||| | ||||||| ||||||||||| ||||||||||||| |
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| T |
33588448 |
tgcaacaagagccatttatgaccatattagagagacaatatcgacctcacttggtcatggcattttcaatcccattttttcaacagtttacagggatcaa |
33588547 |
T |
|
| Q |
148 |
cattattgctttctattcacctaacctctttagatctttggggttgggacacaatgcttctttactttctgc |
219 |
Q |
| |
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|||| | |||||||||||||| ||||||||| |||| |||| || ||| |||| | | ||||||||||||| |
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| T |
33588548 |
cattgtcgctttctattcaccaaacctctttcaatctgtgggtttaggaaacaacggtgctttactttctgc |
33588619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 48 - 219
Target Start/End: Original strand, 33595620 - 33595791
Alignment:
| Q |
48 |
tgcaacaagagccctttaaaaccatattcaaaagggagtatcgacctcacttggtaatggcgatagcaatcccgttttttcaacaagttacagggatcaa |
147 |
Q |
| |
|
||||||||||||| |||| |||||||| | || | ||||||||||||||||| ||||| | ||||||| ||||||||||| ||||||||||||| |
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| T |
33595620 |
tgcaacaagagccatttatgaccatatttgagagacaatatcgacctcacttggtcatggcattttcaatcccattttttcaacagtttacagggatcaa |
33595719 |
T |
|
| Q |
148 |
cattattgctttctattcacctaacctctttagatctttggggttgggacacaatgcttctttactttctgc |
219 |
Q |
| |
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|||| | |||||||||||||| ||||||||| |||| |||| || ||| |||| | | ||||||||||||| |
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| T |
33595720 |
cattgtcgctttctattcaccaaacctctttcaatctgtgggtttaggaaacaacggtgctttactttctgc |
33595791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 48 - 219
Target Start/End: Original strand, 33602751 - 33602922
Alignment:
| Q |
48 |
tgcaacaagagccctttaaaaccatattcaaaagggagtatcgacctcacttggtaatggcgatagcaatcccgttttttcaacaagttacagggatcaa |
147 |
Q |
| |
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||||||||||||| |||| |||||||| | || | ||||||||||||||||| ||||| | ||||||| ||||||||||| ||||||||||||| |
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| T |
33602751 |
tgcaacaagagccatttatgaccatatttgagagacaatatcgacctcacttggtcatggcattttcaatcccattttttcaacagtttacagggatcaa |
33602850 |
T |
|
| Q |
148 |
cattattgctttctattcacctaacctctttagatctttggggttgggacacaatgcttctttactttctgc |
219 |
Q |
| |
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|||| | |||||||||||||| ||||||||| |||| |||| || ||| |||| | | ||||||||||||| |
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| T |
33602851 |
cattgtcgctttctattcaccaaacctctttcaatctgtgggtttaggaaacaacggtgctttactttctgc |
33602922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 174
Target Start/End: Original strand, 33562981 - 33563069
Alignment:
| Q |
86 |
tatcgacctcacttggtaatggcgatagcaatcccgttttttcaacaagttacagggatcaacattattgctttctattcacctaacct |
174 |
Q |
| |
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||||||||||||||||| || || | || || ||| ||||||||||| | || ||||||||||| |||| |||||| |||||||||| |
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| T |
33562981 |
tatcgacctcacttggtgatagcagttgctattccgctttttcaacaactcacggggatcaacatggttgcattctatgcacctaacct |
33563069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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