View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18047_low_30 (Length: 239)
Name: NF18047_low_30
Description: NF18047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18047_low_30 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 42 - 239
Target Start/End: Original strand, 8490988 - 8491192
Alignment:
| Q |
42 |
tgagggaatttttgtgttagttgtatacaaatgattgaaaatgaattagataaacttaagtaagaacaattcttatgaaaaaatgattggttacatacgt |
141 |
Q |
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| T |
8490988 |
tgagggaatttttgtgttagttgtattcaaatgattgaaaatgaattagataaacttaagtaagaacaatgcttatgaaaaaatgattggttacatacgt |
8491087 |
T |
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| Q |
142 |
tctcaacaattcagtcgac-----tttcctagtagttttagttttaccgatagacatatgcatcagacttccacgaatttctgtggt--aagtgttagac |
234 |
Q |
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| T |
8491088 |
tctcaacagttcggtcgactttaatttcctagtagttttagttttaccgatagacatatgcatcagacttccacgaatttctgtggtgacagtgttagac |
8491187 |
T |
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| Q |
235 |
atggc |
239 |
Q |
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||||| |
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| T |
8491188 |
atggc |
8491192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 121 - 237
Target Start/End: Original strand, 3594668 - 3594789
Alignment:
| Q |
121 |
aaaatgattggttacatacgttctcaacaat---tcagtcgactttcctagtagttttagttttaccgatagacatatgcatcagacttccacgaatttc |
217 |
Q |
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| T |
3594668 |
aaaatgattggttacgtacgttctcaacagtggctcggtcgactttcccagtagttttagttttaccgatagacatatgcatcagacttccacgaatttc |
3594767 |
T |
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| Q |
218 |
tgtggta--agtgttagacatg |
237 |
Q |
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| T |
3594768 |
tgtggtaacagtgttagacatg |
3594789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 88
Target Start/End: Original strand, 3594613 - 3594659
Alignment:
| Q |
42 |
tgagggaatttttgtgttagttgtatacaaatgattgaaaatgaatt |
88 |
Q |
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| T |
3594613 |
tgagggaatttttgtgttagttgtatacaaattattgaaaatgaatt |
3594659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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