View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18047_low_31 (Length: 238)
Name: NF18047_low_31
Description: NF18047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18047_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 29135287 - 29135066
Alignment:
| Q |
1 |
ttgaattaacaataattttgattcgtaaattgaattaatcatttacttaagtgatcaatcagatgtcacactagtatacgataagtgtgtccatgtgtta |
100 |
Q |
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| T |
29135287 |
ttgaattaacaataattttgat-cgtaaattgaattaatcatttacttaagtgatcaatcagatgtcacactagtataggataagtgtgtccatgtgtta |
29135189 |
T |
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| Q |
101 |
ttagtgcttaaaaaataagtggtgtttggtgaatattccaaaaacatttcatggctattgttttagaaatggaaatgaaggaatgatgaaataagtggtc |
200 |
Q |
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| T |
29135188 |
ttagtgcttaaaaaataagtggtgtttggtgaatattccaaaaacatttcatggctattgttttagaaatggaaatgaaggaatgatgaaataagtggtc |
29135089 |
T |
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| Q |
201 |
aaagtgggaatgtgaggttgatg |
223 |
Q |
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| T |
29135088 |
aaagtgggaatgtgaggttgatg |
29135066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 29135462 - 29135396
Alignment:
| Q |
1 |
ttgaattaacaataattttgattcgtaaattgaattaatcatttacttaagtgatcaatcagatgtcac |
69 |
Q |
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| T |
29135462 |
ttgaattaaccatagttttgat-cgtaa-ttgaatcaatcatttactcaagtgattaatcaggtgtcac |
29135396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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