View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18047_low_34 (Length: 227)
Name: NF18047_low_34
Description: NF18047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18047_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 27536621 - 27536400
Alignment:
| Q |
1 |
cttttgtaagccttttcttggaactcttgacattgttgtatttatattctaatttatcaaacttgatagacttttaaatttcatttgaaatccttttcat |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
27536621 |
cttttgtaagcctttttttggaactcttgacattgttgtatttatattctaatttatcaaacttgatagacttttaaatttcacttgaaagccttttcat |
27536522 |
T |
|
| Q |
101 |
taaccattactttaataactaatgtttctaaagtttatcacttctgttaagttaaacatctcttatgttgaattttatttttccagatttaacattccaa |
200 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27536521 |
taaccattactttagcaactaatgtttctaaagtttatcacttctgttaagttaaacatctcttatgttgaattttatttttccagatttaacattccaa |
27536422 |
T |
|
| Q |
201 |
gaggtcgacatgggtctgattt |
222 |
Q |
| |
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|| ||||||||||||||||||| |
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| T |
27536421 |
gaagtcgacatgggtctgattt |
27536400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 15643152 - 15642931
Alignment:
| Q |
1 |
cttttgtaagccttttcttggaactcttgacattgttgtatttatattctaatttatcaaacttgatagacttttaaatttcatttgaaatccttttcat |
100 |
Q |
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|||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
15643152 |
cttttgtaagcctttttttggaactcttgacgttgctgtatttatattctaatttatcaaactcgatagacttttaaatttcatttgaaagccttttcat |
15643053 |
T |
|
| Q |
101 |
taaccattactttaataactaatgtttctaaagtttatcacttctgttaagttaaacatctcttatgttgaattttatttttccagatttaacattccaa |
200 |
Q |
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|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15643052 |
taaccattactttagcaactaatgattctaaagtttatcacttctgttaagttaaacatctcttatgttgaattttatttttccagatttaacattccaa |
15642953 |
T |
|
| Q |
201 |
gaggtcgacatgggtctgattt |
222 |
Q |
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|| |||||||||||||||||| |
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| T |
15642952 |
gaaatcgacatgggtctgattt |
15642931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 41 - 222
Target Start/End: Complemental strand, 15654438 - 15654257
Alignment:
| Q |
41 |
tttatattctaatttatcaaacttgatagacttttaaatttcatttgaaatccttttcattaaccattactttaataactaatgtttctaaagtttatca |
140 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
15654438 |
tttattttctaatttatcaaacttgatagacttttaaatttcatttgaaagccttttcattaaccattactttagcaattaatgtttctaaagtttatca |
15654339 |
T |
|
| Q |
141 |
cttctgttaagttaaacatctcttatgttgaattttatttttccagatttaacattccaagaggtcgacatgggtctgattt |
222 |
Q |
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| T |
15654338 |
cttctgttaagttaaaaatctcttatgttgaattttattttttcagatttaacattccaagaagtcgacatgggtttgattt |
15654257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 22003638 - 22003596
Alignment:
| Q |
180 |
tttccagatttaacattccaagaggtcgacatgggtctgattt |
222 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
22003638 |
tttccagatttaacattccaagaagtcgacatgggtctgattt |
22003596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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